View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2725_low_1 (Length: 722)
Name: NF2725_low_1
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2725_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 11 - 371
Target Start/End: Complemental strand, 20614573 - 20614214
Alignment:
| Q |
11 |
atcatcattatcaaacctcatatcacttaaccattcgattaataaagacccaaagcttcgccaatattaacagtatgcataatcagcaacaaaatagatt |
110 |
Q |
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| T |
20614573 |
atcaacattatcaaacctcatatcacttaaccattcgattaataaagacccacagcttcgccaatattaacagtatgcataatcggcaacagaatagatt |
20614474 |
T |
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| Q |
111 |
tagaaagaataaaaacaccttattcatcatgaatatgcatacctgttttacgccgctcatccgagaaagaggcatcaacattaaacattacattgtacta |
210 |
Q |
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| T |
20614473 |
tagaaagaataaaaacaccttattcatcacgaatacacatgcctgttttatgcagctcatccgagaaagaggcatcaacattaa-cattacattgtacta |
20614375 |
T |
|
| Q |
211 |
tatcttgagttcgctgccatgaaataggaagcacgttgttgcttccccataacacctgcagccgaattgatggaatccgcggttgcattatgtacaacca |
310 |
Q |
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| T |
20614374 |
tatcttgagttcgctgccatgaaataggaagcatgttgttgcttccccataacacttgcagccgaattgatggaattcacggttgcattatgtacaacca |
20614275 |
T |
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| Q |
311 |
ttctacggtggtatgcttcaacagaagaagccatgtaatcctctatgagatgtcaagctct |
371 |
Q |
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| T |
20614274 |
ttctactgcggtatgcttcaacagaagaagccatgtaatcctctatgagatgttaagctct |
20614214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 377 - 701
Target Start/End: Complemental strand, 20614160 - 20613838
Alignment:
| Q |
377 |
cagcttccacatgtgcaggataattattctagtataggtgtagcataacaatatccttgtaacaaacttataaagttagttttagttatataccttacag |
476 |
Q |
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| T |
20614160 |
cagcttccacatgtgcaggataattattc-agtataggtgtagcataacactatccttgtaacaaacttataaagttagttttagttatatagcttacag |
20614062 |
T |
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| Q |
477 |
attaaagtctcaattcaatgtaatattcaacaatcagagaataaaaaataagctttaaagcattgtgaataatctcttacactctctctgttatggaata |
576 |
Q |
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| T |
20614061 |
attaaaaactcaattcaatgtaatattcaacgatcagaaaataaaaaacaagctttaaagc-ttgtgaataatctcttacactctctctgttatggaaca |
20613963 |
T |
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| Q |
577 |
taaatctcaatcccaattctaccctagttcaataacatgtatatgaaatcccatagattcctcgattatgatcttctctagtgcaaaccgctactccagt |
676 |
Q |
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| T |
20613962 |
taaatctcaatcccaattctaccctagttcaataacgtgtatatgaaatcccatagattcctcgattatgatcttctctagtgcaaactgctactccaat |
20613863 |
T |
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| Q |
677 |
agttgcaacaaccgcgcctctgcca |
701 |
Q |
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| T |
20613862 |
agttgcaacaaccgcgcctctgcca |
20613838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 27980595 - 27980702
Alignment:
| Q |
16 |
cattatcaaacctcatatcacttaaccattc----gattaataaagacccaaagcttcgccaatattaacagtatgcataatcagcaacaaaatagattt |
111 |
Q |
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||||||||||||||||||||||||||||||| | ||| ||||||||||| | | ||||| |||| ||| |||| |||| |||||||||||||||| |
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| T |
27980595 |
cattatcaaacctcatatcacttaaccattccaatgcataacaaagacccaaaacatagccaacattatcagggtgcaaaatcggcaacaaaatagattt |
27980694 |
T |
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| Q |
112 |
agaaagaa |
119 |
Q |
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| T |
27980695 |
agcaagaa |
27980702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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