View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2725_low_11 (Length: 423)

Name: NF2725_low_11
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2725_low_11
NF2725_low_11
[»] chr2 (12 HSPs)
chr2 (1-285)||(14912567-14912852)
chr2 (351-423)||(14912429-14912501)
chr2 (9-89)||(17973791-17973870)
chr2 (9-89)||(25483210-25483289)
chr2 (9-89)||(25490816-25490895)
chr2 (9-89)||(30652490-30652569)
chr2 (9-88)||(9183859-9183937)
chr2 (12-86)||(27567138-27567212)
chr2 (28-88)||(24536459-24536519)
chr2 (32-86)||(42727645-42727699)
chr2 (32-86)||(44758797-44758851)
chr2 (2-67)||(32080629-32080694)
[»] chr4 (19 HSPs)
chr4 (9-89)||(24491318-24491398)
chr4 (2-86)||(7899323-7899407)
chr4 (9-89)||(37263004-37263083)
chr4 (9-89)||(12875913-12875992)
chr4 (32-96)||(33467495-33467559)
chr4 (28-89)||(13061058-13061119)
chr4 (9-89)||(19103551-19103630)
chr4 (30-89)||(8028772-8028831)
chr4 (2-89)||(12316177-12316263)
chr4 (32-86)||(8984482-8984536)
chr4 (32-86)||(13687700-13687754)
chr4 (32-86)||(13696354-13696408)
chr4 (32-86)||(13701475-13701529)
chr4 (32-86)||(13711968-13712022)
chr4 (32-86)||(21304030-21304084)
chr4 (32-86)||(36355157-36355211)
chr4 (32-86)||(40000085-40000139)
chr4 (32-86)||(54344219-54344273)
chr4 (9-86)||(54992416-54992492)
[»] scaffold0061 (1 HSPs)
scaffold0061 (2-86)||(48326-48410)
[»] scaffold0017 (1 HSPs)
scaffold0017 (2-86)||(150223-150307)
[»] scaffold0015 (1 HSPs)
scaffold0015 (2-86)||(212739-212823)
[»] chr8 (11 HSPs)
chr8 (2-86)||(21960025-21960109)
chr8 (2-83)||(8329750-8329831)
chr8 (12-89)||(19431266-19431343)
chr8 (12-89)||(19567415-19567492)
chr8 (9-89)||(4241446-4241525)
chr8 (11-89)||(7005251-7005329)
chr8 (30-89)||(19951052-19951111)
chr8 (28-89)||(17021854-17021915)
chr8 (28-89)||(17552291-17552352)
chr8 (30-89)||(4540871-4540930)
chr8 (32-86)||(21648279-21648333)
[»] scaffold0011 (1 HSPs)
scaffold0011 (11-89)||(2857-2935)
[»] chr6 (8 HSPs)
chr6 (9-95)||(17289084-17289170)
chr6 (9-89)||(10486325-10486405)
chr6 (9-89)||(16834602-16834681)
chr6 (9-89)||(19479366-19479446)
chr6 (2-89)||(12797211-12797297)
chr6 (32-86)||(22702443-22702497)
chr6 (32-86)||(29514493-29514547)
chr6 (32-89)||(19992849-19992906)
[»] scaffold0070 (2 HSPs)
scaffold0070 (2-86)||(60048-60132)
scaffold0070 (2-86)||(64250-64334)
[»] scaffold0060 (1 HSPs)
scaffold0060 (2-86)||(51281-51365)
[»] chr5 (11 HSPs)
chr5 (9-89)||(558345-558424)
chr5 (9-89)||(26668853-26668932)
chr5 (9-89)||(26940450-26940529)
chr5 (9-89)||(39519961-39520040)
chr5 (9-89)||(41998291-41998370)
chr5 (9-89)||(36940630-36940709)
chr5 (12-89)||(25688046-25688123)
chr5 (28-89)||(36425231-36425292)
chr5 (32-86)||(17505919-17505973)
chr5 (32-86)||(41854435-41854489)
chr5 (32-86)||(42020828-42020882)
[»] chr3 (11 HSPs)
chr3 (9-89)||(3674215-3674294)
chr3 (9-89)||(23664562-23664641)
chr3 (9-89)||(8884819-8884898)
chr3 (9-89)||(12970250-12970329)
chr3 (28-89)||(18468806-18468867)
chr3 (30-89)||(16452777-16452836)
chr3 (32-86)||(3481144-3481198)
chr3 (32-86)||(15767216-15767270)
chr3 (28-86)||(17359158-17359216)
chr3 (32-86)||(20094847-20094901)
chr3 (31-89)||(27603974-27604032)
[»] chr1 (5 HSPs)
chr1 (9-89)||(10136901-10136980)
chr1 (9-89)||(25845332-25845411)
chr1 (28-82)||(5725958-5726012)
chr1 (32-86)||(27712287-27712341)
chr1 (28-89)||(16037208-16037269)
[»] chr7 (9 HSPs)
chr7 (11-89)||(7018020-7018098)
chr7 (11-89)||(7033378-7033456)
chr7 (9-89)||(12802857-12802936)
chr7 (32-86)||(17496698-17496752)
chr7 (32-86)||(17556462-17556516)
chr7 (32-86)||(33239019-33239073)
chr7 (32-86)||(47994816-47994870)
chr7 (28-89)||(10391535-10391596)
chr7 (28-89)||(2596361-2596424)
[»] scaffold0067 (1 HSPs)
scaffold0067 (9-89)||(32792-32872)
[»] scaffold0690 (1 HSPs)
scaffold0690 (15-89)||(6761-6835)
[»] scaffold0166 (1 HSPs)
scaffold0166 (32-86)||(17938-17992)
[»] scaffold0014 (1 HSPs)
scaffold0014 (32-86)||(27389-27443)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 14912852 - 14912567
Alignment:
Q  1 attatcagagcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacctccacttcggt 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||| |||    
T  14912852 attatcagagcatgttttatcactccttgacatgttattacccattaaacctaagtcttgggatctccactaatgtaggtcgggttaccatcactttggt 14912753  T
Q  101 gag-ctatgaattaaatgacctaatttgcctttgcttgnnnnnnntaaatgccgggatttaaagggaacagtcgatatctcaagtctcaatgggaagaaa 199  Q
    ||| ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14912752 gaggctatgaattaaatgacctaatttgcctttgcttgaaaaaaataaatgccgggatttaaagggaacagtcgatatctcaagtctcaatgagaagaaa 14912653  T
Q  200 aacataaacaaaagaacaaatcaaaattgacataagaaaattcaattaatattatccaccaaatcaataaagtaacataacaagat 285  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14912652 aacataaacaaaagaacaaatcaaaattgacataagcaaattcaattaatattatccaccaaatcaataaagtaacataacaagat 14912567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 351 - 423
Target Start/End: Complemental strand, 14912501 - 14912429
Alignment:
Q  351 gcattgacaaaattgcaattggtcctgatttctccttcatcatctccagtaagaacatcaatgacaccaaact 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14912501 gcattgacaaaattgcaattggtcctgatttctccttcatcatctccagtaagaacatcaatgacaccaaact 14912429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 17973870 - 17973791
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| |||||||| | |||||||||||||||||| ||||||  |||||||||||||| | |||||||||||||||||    
T  17973870 agcatgttctatcactcat-gacttgttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttacc 17973791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 25483289 - 25483210
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| |||||||| | |||||||||||||||||| ||||||  |||||||||||||| | |||||||||||||||||    
T  25483289 agcatgttgtatcactcat-gacttgttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttacc 25483210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 25490895 - 25490816
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| |||||||| | |||||||||||||||||| ||||||  |||||||||||||| | |||||||||||||||||    
T  25490895 agcatgttgtatcactcat-gacttgttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttacc 25490816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 30652490 - 30652569
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| |||||||| | |||||||||||||||||| ||||||  |||||||||||||| | |||||||||||||||||    
T  30652490 agcatgttctatcactcat-gacttgttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttacc 30652569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 9183937 - 9183859
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttac 88  Q
    |||||||| |||||||| | |||||||||||||||||| ||||||  |||||||||||||| | ||||||||||||||||    
T  9183937 agcatgttctatcactcat-gacttgttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttac 9183859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 27567138 - 27567212
Alignment:
Q  12 atgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||| ||||||| | ||||| ||||||||||||| |||| ||||||||||||||| | | ||||||||||||||    
T  27567138 atgttctatcacttcatgactggttattacccattgaaccaaagtcttgggatctctagtcatgtaggtcgggtt 27567212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 24536519 - 24536459
Alignment:
Q  28 tgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttac 88  Q
    ||||||||||||||||||| ||||||  |||| ||||||||| | ||||||||||||||||    
T  24536519 tgacttgttattacccattgaacctatttcttaggatctccattcatgtaggtcgggttac 24536459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 42727699 - 42727645
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  42727699 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 42727645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 44758851 - 44758797
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  44758851 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 44758797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 32080629 - 32080694
Alignment:
Q  2 ttatcagagcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctc 67  Q
    |||||| |||||||| ||||||  | |||||||||||| |||||| ||||||  ||||||||||||    
T  32080629 ttatcatagcatgttctatcacatcatgacttgttattgcccattgaacctatttcttgggatctc 32080694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 24491318 - 24491398
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  24491318 agcatgttctatcacttcatgacttgttattacccattaaacctaagtcttgggatctccagtcatgtaggtcgggttacc 24491398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 7899407 - 7899323
Alignment:
Q  2 ttatcagagcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    |||||| |||||||| ||||||| | ||||||||||||||||||| |||||||||||||||||||||| | ||||||||| ||||    
T  7899407 ttatcatagcatgttctatcacttcatgacttgttattacccattgaacctaagtcttgggatctccagtaatgtaggtcaggtt 7899323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 37263083 - 37263004
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| |||||||| | |||||||||||||||||| ||||||  |||||||||||||| | |||||||||||||||||    
T  37263083 agcatgttctatcactcat-gacttgttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttacc 37263004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 12875913 - 12875992
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| |||||||| | |||||||||||||||||| ||||||  |||||||||||||| | |||||||| ||||||||    
T  12875913 agcatgttctatcactcat-gacttgttattacccattgaacctatttcttgggatctccagtcatgtaggttgggttacc 12875992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 33467559 - 33467495
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacctccactt 96  Q
    ||||||||||||||| ||||||  |||||||||||||| | |||||||||||||||||| |||||    
T  33467559 ttgttattacccattgaacctatttcttgggatctccagtcatgtaggtcgggttaccttcactt 33467495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 13061058 - 13061119
Alignment:
Q  28 tgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    ||||||||||||||||||  ||||||  |||||||||||||| | |||||||||||||||||    
T  13061058 tgacttgttattacccatcgaacctatttcttgggatctccagtcatgtaggtcgggttacc 13061119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 19103551 - 19103630
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| |||||||| | |||||||||||||||||| ||||||  |||||||||||||| | || |||| |||||||||    
T  19103551 agcatgttctatcactcat-gacttgttattacccattgaacctatttcttgggatctccagtcatttaggccgggttacc 19103630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 8028831 - 8028772
Alignment:
Q  30 acttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    ||||||||||||||||| ||||||  |||||||||||||| | || |||||| |||||||    
T  8028831 acttgttattacccattgaacctatttcttgggatctccagtcatttaggtcaggttacc 8028772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 12316177 - 12316263
Alignment:
Q  2 ttatcagagcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||| |||||||| |||||||  | ||||| |||||||||||| ||||||  |||||||||||| | | |||||||||| ||||||    
T  12316177 ttatcatagcatgttctatcacttgt-gacttcttattacccattgaacctatttcttgggatctctagtcatgtaggtcgagttacc 12316263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 8984536 - 8984482
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  8984536 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 8984482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 13687700 - 13687754
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  13687700 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 13687754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 13696354 - 13696408
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  13696354 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 13696408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 13701475 - 13701529
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  13701475 ttgttattacccattgaacctagttcttgggatctccagtcatataggtcgggtt 13701529  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 13711968 - 13712022
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  13711968 ttgttattacccattgaacctagttcttgggatctccagtcatataggtcgggtt 13712022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 21304084 - 21304030
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  21304084 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 21304030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 36355157 - 36355211
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  36355157 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 36355211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 40000085 - 40000139
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  40000085 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 40000139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 54344219 - 54344273
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  54344219 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 54344273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 54992416 - 54992492
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||||  | || ||||||||||||||| ||||||  | |||||||||||| | || |||||||||||    
T  54992416 agcatgttttatcacttgt-gatttgttattacccattgaacctagtttttgggatctccagtcatataggtcgggtt 54992492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 48410 - 48326
Alignment:
Q  2 ttatcagagcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    |||||| |||||||| ||||||| | ||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||    
T  48410 ttatcatagcatgttctatcacttcatgacttgttattacccattgaacctaagtcttgggatctccagtcatgtaggtcgggtt 48326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 150223 - 150307
Alignment:
Q  2 ttatcagagcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    |||||| |||||||| ||||||| | ||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||    
T  150223 ttatcatagcatgttctatcacttcatgacttgttattacccattgaacctaagtcttgggatctccagtcatgtaggtcgggtt 150307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 212823 - 212739
Alignment:
Q  2 ttatcagagcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    |||||| |||||||| ||||||| | ||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||    
T  212823 ttatcatagcatgttctatcacttcatgacttgttattacccattgaacctaagtcttgggatctccagtcatgtaggtcgggtt 212739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 21960025 - 21960109
Alignment:
Q  2 ttatcagagcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    |||||| |||||||| ||||||| | ||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||    
T  21960025 ttatcatagcatgttctatcacttcatgacttgttattacccattgaacctaagtcttgggatctccagtcatgtaggtcgggtt 21960109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 8329831 - 8329750
Alignment:
Q  2 ttatcagagcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgg 83  Q
    |||||| || |||||||| |||| | ||||||||||||||||||| |||||| ||||||||||||||| | |||||||||||    
T  8329831 ttatcatagtatgttttaccacttcatgacttgttattacccattgaacctaggtcttgggatctccaatcatgtaggtcgg 8329750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 19431266 - 19431343
Alignment:
Q  12 atgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    ||||| ||||||| | ||||||||||||||||||| ||||| | |||||||||||||| | |||||||||||||||||    
T  19431266 atgttctatcacttcatgacttgttattacccattgaaccttaatcttgggatctccaatcatgtaggtcgggttacc 19431343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 19567415 - 19567492
Alignment:
Q  12 atgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    ||||| ||||||| | ||||||||||||||||||| ||||| | |||||||||||||| | |||||||||||||||||    
T  19567415 atgttctatcacttcatgacttgttattacccattgaaccttaatcttgggatctccaatcatgtaggtcgggttacc 19567492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 4241525 - 4241446
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| |||||||| | |||||||||||||||||| ||||||  |||||||||||||| | |||||||||||||||||    
T  4241525 agcatgttctatcactcat-gacttgttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttacc 4241446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 7005251 - 7005329
Alignment:
Q  11 catgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||||||||||| |||||||||||||| |||| |||| |  |||||||||||| | | || ||||||||||||||    
T  7005251 catgttttatcactccatgacttgttattactcattgaaccaatttcttgggatctctagtcatttaggtcgggttacc 7005329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 19951052 - 19951111
Alignment:
Q  30 acttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    ||||||||||||||||| ||||||  |||||||||||||| | || ||||||||||||||    
T  19951052 acttgttattacccattgaacctatttcttgggatctccaatcatttaggtcgggttacc 19951111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 17021854 - 17021915
Alignment:
Q  28 tgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    ||||||||||||||||||| ||||||  |||||||||||| | | |||||||| ||||||||    
T  17021854 tgacttgttattacccattgaacctatttcttgggatctctagttatgtaggttgggttacc 17021915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 17552291 - 17552352
Alignment:
Q  28 tgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    ||||||||||||||||||| ||||||  |||||||||||| | | |||||||| ||||||||    
T  17552291 tgacttgttattacccattgaacctatttcttgggatctctagttatgtaggttgggttacc 17552352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 4540930 - 4540871
Alignment:
Q  30 acttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    ||||||||||||||||| ||||||  |||||||||||||| | || |||||||| |||||    
T  4540930 acttgttattacccattgaacctatttcttgggatctccagtcatttaggtcggattacc 4540871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 21648333 - 21648279
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  21648333 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 21648279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 2857 - 2935
Alignment:
Q  11 catgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||| ||||||| | ||||||||||||||||||| ||||||| |||||||||||||| | |||||||||||||||||    
T  2857 catgttctatcacttcatgacttgttattacccattgaacctaaatcttgggatctccaatcatgtaggtcgggttacc 2935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 17289170 - 17289084
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacctccact 95  Q
    |||||||| ||||||| | ||||||||||||||||||| ||||||| |||||||||||||| | |||||| ||||||||||| ||||    
T  17289170 agcatgttctatcacttcatgacttgttattacccattgaacctaaatcttgggatctccaatcatgtagatcgggttaccttcact 17289084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 10486325 - 10486405
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| ||||||| | ||| ||||||||||||||| ||||||| |||||||||||||| | |||||| ||||||||||    
T  10486325 agcatgttctatcacttcatgatttgttattacccattgaacctaaatcttgggatctccagtcatgtagatcgggttacc 10486405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 16834681 - 16834602
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| |||||||| | |||||||||||||||||| ||||||  |||||||||||||| | |||||||||||||||||    
T  16834681 agcatgttctatcactcat-gacttgttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttacc 16834602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 19479366 - 19479446
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| ||||||| | ||||||||||||||||||| ||||||| | |||||||||| | | |||||||||||||||||    
T  19479366 agcatgttctatcacttcatgacttgttattacccattgaacctaaattttgggatctcgaatcatgtaggtcgggttacc 19479446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 12797297 - 12797211
Alignment:
Q  2 ttatcagagcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||| |||||||| |||||||| | |||||||||||||||||| ||  ||  | |||||||||||| | |||||||||||||||||    
T  12797297 ttatcatagcatgttctatcactcgt-gacttgttattacccattgaatatactttttgggatctccagtcatgtaggtcgggttacc 12797211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 22702497 - 22702443
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  22702497 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 22702443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 29514547 - 29514493
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  29514547 ttgttattacccattgaacctagttcttgggatctccagtcatataggtcgggtt 29514493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 19992906 - 19992849
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    ||||||||| ||||| ||||||  |||||||||||||| | ||||||||||| |||||    
T  19992906 ttgttattatccattgaacctatctcttgggatctccagtcatgtaggtcggattacc 19992849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 60048 - 60132
Alignment:
Q  2 ttatcagagcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    |||||| |||||||| ||||||| | ||||||||||||||||||| |||||||||| | ||||||||| | ||||||||||||||    
T  60048 ttatcatagcatgttctatcacttcatgacttgttattacccattgaacctaagtcgtaggatctccagtcatgtaggtcgggtt 60132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 64250 - 64334
Alignment:
Q  2 ttatcagagcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    |||||| |||||||| ||||||| | ||||||||||||||||||| |||||||||| | ||||||||| | ||||||||||||||    
T  64250 ttatcatagcatgttctatcacttcatgacttgttattacccattgaacctaagtcgtaggatctccagtcatgtaggtcgggtt 64334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 51365 - 51281
Alignment:
Q  2 ttatcagagcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    |||||| | |||||| ||||||| | ||||||||||||||||||| ||||||||| |||||||||||| | ||||||||||||||    
T  51365 ttatcataacatgttctatcacttcatgacttgttattacccattgaacctaagttttgggatctccagtcatgtaggtcgggtt 51281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 558345 - 558424
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| |||||||| | |||||||||||||||||| ||||||  |||||||||||||| | |||||||||||||||||    
T  558345 agcatgttctatcactcat-gacttgttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttacc 558424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 26668853 - 26668932
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| |||||||| | |||||||||||||||||| ||||||  |||||||||||||| | |||||||||||||||||    
T  26668853 agcatgttctatcactcat-gacttgttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttacc 26668932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 26940450 - 26940529
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| |||||||| | |||||||||||||||||| ||||||  |||||||||||||| | |||||||||||||||||    
T  26940450 agcatgttctatcactcat-gacttgttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttacc 26940529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 39519961 - 39520040
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| |||||||| | |||||||||||||||||| ||||||  |||||||||||||| | |||||||||||||||||    
T  39519961 agcatgttctatcactcat-gacttgttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttacc 39520040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 41998291 - 41998370
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| |||||||| | |||||||||||||||||| ||||||  |||||||||||||| | |||||||||||||||||    
T  41998291 agcatgttctatcactcat-gacttgttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttacc 41998370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 36940709 - 36940630
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| |||||||| | |||||||||| ||||||| ||||||  |||||||||||||| | |||||||||||||||||    
T  36940709 agcatgttctatcactcat-gacttgttatcacccattgaacctatttcttgggatctccaatcatgtaggtcgggttacc 36940630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 25688123 - 25688046
Alignment:
Q  12 atgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    ||||| ||||||  ||||||||| ||||||||||| ||||||  |||||||||||||| | || ||||||||||||||    
T  25688123 atgttgtatcaccacttgacttgatattacccatttaacctatttcttgggatctccagtcatttaggtcgggttacc 25688046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 36425231 - 36425292
Alignment:
Q  28 tgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| |||||||||| ||||||  |||||||||||||| | |||||||||||||||||    
T  36425231 tgacttgtcattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttacc 36425292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 17505919 - 17505973
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  17505919 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 17505973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 41854435 - 41854489
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  41854435 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 41854489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 42020828 - 42020882
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  42020828 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 42020882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 3674215 - 3674294
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| |||||||| | |||||||||||||||||| ||||||  |||||||||||||| | |||||||||||||||||    
T  3674215 agcatgttctatcactcat-gacttgttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttacc 3674294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 23664641 - 23664562
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| |||||||| | |||||||||||||||||| ||||||  |||||||||||||| | |||||||||||||||||    
T  23664641 agcatgttctatcactcat-gacttgttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttacc 23664562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 8884819 - 8884898
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| |||||||| | |||||||||||||||||| ||||||  |||||||||||| | | |||||||||||||||||    
T  8884819 agcatgttctatcactcat-gacttgttattacccattgaacctatttcttgggatctctaatcatgtaggtcgggttacc 8884898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 12970329 - 12970250
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    ||||||||||||||||| | |||||||||||||||||| ||||||  |||||||||||||| | || |||||| |||||||    
T  12970329 agcatgttttatcactcat-gacttgttattacccattgaacctatttcttgggatctccaatcatataggtcaggttacc 12970250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 18468806 - 18468867
Alignment:
Q  28 tgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    ||||||||||||||||||| ||||||  |||||||||||||| | ||||||||| |||||||    
T  18468806 tgacttgttattacccattgaacctatttcttgggatctccaatcatgtaggtcaggttacc 18468867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 16452836 - 16452777
Alignment:
Q  30 acttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    ||||||||||||||||| ||||||  |||||||||||||| | || |||||||| |||||    
T  16452836 acttgttattacccattgaacctatttcttgggatctccagtcatttaggtcggattacc 16452777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 3481198 - 3481144
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  3481198 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 3481144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 15767270 - 15767216
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  15767270 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 15767216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 17359158 - 17359216
Alignment:
Q  28 tgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||||||| ||||||  |||||||||||||| | || |||| ||||||    
T  17359158 tgacttgttattacccattgaacctagttcttgggatctccagtcatttaggccgggtt 17359216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 20094901 - 20094847
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  20094901 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 20094847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 27604032 - 27603974
Alignment:
Q  31 cttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||||||||||| |||||| |||||| |||||||| | |||||||| || |||||    
T  27604032 cttgttattacccattgaacctacgtcttgcgatctccaatcatgtaggttggattacc 27603974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 10136901 - 10136980
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| |||||||| | |||||||||||||||||| ||||||  |||||||||||||| | |||||||||||||||||    
T  10136901 agcatgttctatcactcat-gacttgttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttacc 10136980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 25845332 - 25845411
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| |||||||| | |||||||||||||||||| ||||||  |||||||||||||| | |||||||||||||||||    
T  25845332 agcatgttctatcactcat-gacttgttattacccattgaacctatttcttgggatctccaatcatgtaggtcgggttacc 25845411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 5725958 - 5726012
Alignment:
Q  28 tgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcg 82  Q
    ||||||||||||||||||| ||||||  |||||||||||||| | || |||||||    
T  5725958 tgacttgttattacccattgaacctagttcttgggatctccagtcatttaggtcg 5726012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 27712287 - 27712341
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  27712287 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 27712341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 16037208 - 16037269
Alignment:
Q  28 tgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    ||||||||||||||| ||| ||||||  |||||||||||||| | || ||||| ||||||||    
T  16037208 tgacttgttattacctattgaacctatttcttgggatctccaatcatttaggtagggttacc 16037269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 7018098 - 7018020
Alignment:
Q  11 catgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||| ||||||| | |||||  ||||||||| || |||||||||||||||||||||| | |||||||||||||||||    
T  7018098 catgttctatcacttcatgactcattattacccgttgaacctaagtcttgggatctccattcatgtaggtcgggttacc 7018020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 7033456 - 7033378
Alignment:
Q  11 catgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||| ||||||| | |||||  ||||||||| || |||||||||||||||||||||| | |||||||||||||||||    
T  7033456 catgttctatcacttcatgactcattattacccgttgaacctaagtcttgggatctccattcatgtaggtcgggttacc 7033378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 12802857 - 12802936
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| |||||||| | |||||||||||||||||| ||||||  |||||||||||||| | ||||||||  |||||||    
T  12802857 agcatgttctatcactcat-gacttgttattacccattgaacctatttcttgggatctccaatcatgtaggttaggttacc 12802936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 17496698 - 17496752
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  17496698 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 17496752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 17556516 - 17556462
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  17556516 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 17556462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 33239019 - 33239073
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  33239019 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 33239073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 47994816 - 47994870
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  47994816 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 47994870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 10391596 - 10391535
Alignment:
Q  28 tgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    ||||||||||||||||||| |||| |  | |||||||||||| | | |||||||||||||||    
T  10391596 tgacttgttattacccattgaaccaattttttgggatctccagtcacgtaggtcgggttacc 10391535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 2596361 - 2596424
Alignment:
Q  28 tgacttgttattaccca--ttaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    ||||||||||||||||   || ||||||  |||||||||||||||| ||||||||| |||||||    
T  2596361 tgacttgttattaccccctttgaacctatttcttgggatctccactcatgtaggtccggttacc 2596424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 32872 - 32792
Alignment:
Q  9 agcatgttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    |||||||| ||||||| | ||||| ||||||| ||||| |||||||||||||||||||||| | | |||||| ||||||||    
T  32872 agcatgttctatcacttcatgactagttattatccattgaacctaagtcttgggatctccagtcaagtaggttgggttacc 32792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 6761 - 6835
Alignment:
Q  15 ttttatcactccttgacttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggttacc 89  Q
    ||||||||| || |||||| |||||||||||| ||| ||  |||||||||||||| | |||||||||||||||||    
T  6761 ttttatcaccccgtgactttttattacccattgaacttatttcttgggatctccagtcatgtaggtcgggttacc 6835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 17992 - 17938
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  17992 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 17938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 27389 - 27443
Alignment:
Q  32 ttgttattacccattaaacctaagtcttgggatctccactgatgtaggtcgggtt 86  Q
    ||||||||||||||| ||||||  |||||||||||||| | || |||||||||||    
T  27389 ttgttattacccattgaacctagttcttgggatctccagtcatttaggtcgggtt 27443  T

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