View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2725_low_12 (Length: 414)

Name: NF2725_low_12
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2725_low_12
NF2725_low_12
[»] chr3 (3 HSPs)
chr3 (18-223)||(46826626-46826831)
chr3 (218-399)||(9859191-9859373)
chr3 (355-404)||(53877324-53877373)
[»] chr7 (3 HSPs)
chr7 (218-399)||(40617182-40617364)
chr7 (253-399)||(38342469-38342615)
chr7 (355-399)||(35515736-35515780)
[»] chr6 (1 HSPs)
chr6 (218-399)||(32533512-32533694)
[»] chr2 (2 HSPs)
chr2 (246-399)||(40427373-40427526)
chr2 (218-336)||(842059-842178)
[»] chr8 (1 HSPs)
chr8 (258-404)||(7179473-7179619)
[»] chr1 (1 HSPs)
chr1 (297-383)||(12687738-12687824)
[»] chr5 (1 HSPs)
chr5 (253-341)||(7961650-7961738)


Alignment Details
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 46826626 - 46826831
Alignment:
Q  18 aaagattgggtctgcttctgaggcagcagggaattgtagtggaggcaaacttcatttcataactacatcataacttttgcttaagggtgatataatcttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46826626 aaagattgggtctgcttctgaggcagcagggaattgtagtggaggcaaacttcatttcataactacatcataacttttgcttaagggtgatataatcttt 46826725  T
Q  118 tgaaattttgattatatggagtgctaaaccacaatacaacatgctactacttctcaaactaacaaatnnnnnnntgtcaaaaatacatattgttaaggct 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       | ||||||||||||||||||||||||    
T  46826726 tgaaattttgattatatggagtgctaaaccacaatacaacatgctactacttctcaaactaacaaataaaaaaatatcaaaaatacatattgttaaggct 46826825  T
Q  218 aaaatg 223  Q
    ||||||    
T  46826826 aaaatg 46826831  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 218 - 399
Target Start/End: Complemental strand, 9859373 - 9859191
Alignment:
Q  218 aaaatgtttctttacatgtttacggaaag-ataatcggaagtggaaggcggattcttcttctttttatatagtttgaagtgcatacaattctctcattgc 316  Q
    ||||||||||||||||  |||||  |||| ||| | |||||||||| |||||| ||||||||| ||| | ||||  ||||||||||||| || |||||||    
T  9859373 aaaatgtttctttacagatttacaaaaaggatatttggaagtggaacgcggatccttcttcttgttacacagttcaaagtgcatacaatactttcattgc 9859274  T
Q  317 tcaggttcatgttgataatgtggtggcagcgcctcttatttggcataaggacattccgttgaaggtggtactatttgtgtggc 399  Q
    ||||||| |||||||||||||||||||| |||||  | |||||||||||||| |||| ||||| ||||| || ||||||||||    
T  9859273 tcaggtttatgttgataatgtggtggcaacgccttctttttggcataaggacgttcctttgaaagtggtgctttttgtgtggc 9859191  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 53877373 - 53877324
Alignment:
Q  355 tttggcataaggacattccgttgaaggtggtactatttgtgtggcctttg 404  Q
    |||||||||||||| || ||||||||||||| || |||||||||| ||||    
T  53877373 tttggcataaggacgtttcgttgaaggtggtgctttttgtgtggcgtttg 53877324  T

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Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 218 - 399
Target Start/End: Complemental strand, 40617364 - 40617182
Alignment:
Q  218 aaaatgtttctttacatgtttacggaaag-ataatcggaagtggaaggcggattcttcttctttttatatagtttgaagtgcatacaattctctcattgc 316  Q
    ||||||||||||| || ||| || ||||| ||| | | |||||||| | |||| ||||||||| ||||| ||||  ||||||||||||| ||||||||||    
T  40617364 aaaatgtttcttttcaggttcacagaaaggatatttgaaagtggaatgtggatccttcttcttgttatacagttcaaagtgcatacaatactctcattgc 40617265  T
Q  317 tcaggttcatgttgataatgtggtggcagcgcctcttatttggcataaggacattccgttgaaggtggtactatttgtgtggc 399  Q
     ||||||||||||||||||||||||  | |||||  | ||||||||| |||  | || ||||||||||| || ||||||||||    
T  40617264 gcaggttcatgttgataatgtggtgctatcgccttctttttggcatagggatgtccctttgaaggtggtgctttttgtgtggc 40617182  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 253 - 399
Target Start/End: Original strand, 38342469 - 38342615
Alignment:
Q  253 ggaagtggaaggcggattcttcttctttttatatagtttgaagtgcatacaattctctcattgctcaggttcatgttgataatgtggtggcagcgcctct 352  Q
    |||||||||| |||||| ||||||||| ||| | ||||   |||||||||||| | |||||| ||||||| || || ||||||||| ||||| |||||      
T  38342469 ggaagtggaacgcggatccttcttcttgttacacagttcagagtgcatacaatacgctcatttctcaggtccaagtcgataatgtgatggcaacgccttc 38342568  T
Q  353 tatttggcataaggacattccgttgaaggtggtactatttgtgtggc 399  Q
    | |||||||||||||| |||||||| ||||||| || ||||||||||    
T  38342569 tttttggcataaggacgttccgttggaggtggtgctttttgtgtggc 38342615  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 399
Target Start/End: Original strand, 35515736 - 35515780
Alignment:
Q  355 tttggcataaggacattccgttgaaggtggtactatttgtgtggc 399  Q
    ||||||||||||||||||| ||||||||||| |||||||| ||||    
T  35515736 tttggcataaggacattcctttgaaggtggtgctatttgtttggc 35515780  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 218 - 399
Target Start/End: Complemental strand, 32533694 - 32533512
Alignment:
Q  218 aaaatgtttctttacatgtttacggaaag-ataatcggaagtggaaggcggattcttcttctttttatatagtttgaagtgcatacaattctctcattgc 316  Q
    ||||||||||||| || ||| || ||||| ||| | | |||||||| || ||| |||||||||  |||| ||||   |||||||||||| || ||||||     
T  32533694 aaaatgtttcttttcaggttcacagaaaggatatttgaaagtggaatgcagatccttcttcttgctatacagttcacagtgcatacaatactttcattgt 32533595  T
Q  317 tcaggttcatgttgataatgtggtggcagcgcctcttatttggcataaggacattccgttgaaggtggtactatttgtgtggc 399  Q
     ||||||||||||||||||||||||||| |||||  | | |||||||||||| || | ||||||||||| || ||||||||||    
T  32533594 gcaggttcatgttgataatgtggtggcatcgccttctttatggcataaggacgtttctttgaaggtggtgctttttgtgtggc 32533512  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 399
Target Start/End: Complemental strand, 40427526 - 40427373
Alignment:
Q  246 gataatcggaagtggaaggcggattcttcttctttttatatagtttgaagtgcatacaattctctcattgctcaggttcatgttgataatgtggtggcag 345  Q
    |||||| | |||||||||||| |||||||||| |  |||| |||| ||||||||||||||||||| || |   ||||| ||| |||||||| ||||| ||    
T  40427526 gataattgaaagtggaaggcgaattcttcttcgtgctatacagttcgaagtgcatacaattctcttatggaataggtttatgctgataatgcggtggtag 40427427  T
Q  346 cgcctcttatttggcataaggacattccgttgaaggtggtactatttgtgtggc 399  Q
     ||||  |||||||||||| ||  | || ||||||||||| || ||||||||||    
T  40427426 tgccttctatttggcataaagatgtccctttgaaggtggtgctttttgtgtggc 40427373  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 336
Target Start/End: Complemental strand, 842178 - 842059
Alignment:
Q  218 aaaatgtttctttacatgtttacggaaag-ataatcggaagtggaaggcggattcttcttctttttatatagtttgaagtgcatacaattctctcattgc 316  Q
    ||||||||||||| || ||| || ||||| ||| | |||||||||| |||||| ||||||||| ||||| ||||  ||||||||||||| |||||| |||    
T  842178 aaaatgtttcttttcaggttcacagaaaggatatttggaagtggaatgcggatccttcttcttgttatacagttcaaagtgcatacaatactctcactgc 842079  T
Q  317 tcaggttcatgttgataatg 336  Q
     || |||||| |||| ||||    
T  842078 gcatgttcatattgacaatg 842059  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 258 - 404
Target Start/End: Complemental strand, 7179619 - 7179473
Alignment:
Q  258 tggaaggcggattcttcttctttttatatagtttgaagtgcatacaattctctcattgctcaggttcatgttgataatgtggtggcagcgcctcttattt 357  Q
    ||||| |||||||| ||||||| ||| | ||||   ||||| |||||| | |||||||| |||||||| |||||| |||||  || | | |||  | |||    
T  7179619 tggaatgcggattcctcttcttgttacacagttcagagtgcttacaatacgctcattgcccaggttcaggttgatcatgtgacggaaacaccttctcttt 7179520  T
Q  358 ggcataaggacattccgttgaaggtggtactatttgtgtggcctttg 404  Q
    ||||||||||| |||||||||||||||| || |||||||||| ||||    
T  7179519 ggcataaggacgttccgttgaaggtggtgctttttgtgtggcgtttg 7179473  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 383
Target Start/End: Original strand, 12687738 - 12687824
Alignment:
Q  297 gcatacaattctctcattgctcaggttcatgttgataatgtggtggcagcgcctcttatttggcataaggacattccgttgaaggtg 383  Q
    ||||| |||||| | ||||||||||||  ||||||||||| || |||||| ||| ||||||||||||| ||  ||||||| ||||||    
T  12687738 gcatataattctattattgctcaggttactgttgataatgcggaggcagctccttttatttggcataaagatgttccgttaaaggtg 12687824  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 7961738 - 7961650
Alignment:
Q  253 ggaagtggaaggcggattcttcttctttttatatagtttgaagtgcatacaattctctcattgctcaggttcatgttgataatgtggtg 341  Q
    |||||||||| |||||| || |||| | ||||| |||   ||||||| ||| | ||||||| || ||||||||||||||||||||||||    
T  7961738 ggaagtggaacgcggatcctacttcctgttatacagtaaaaagtgcagacactactctcatggcgcaggttcatgttgataatgtggtg 7961650  T

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