View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2725_low_13 (Length: 384)
Name: NF2725_low_13
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2725_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 14504845 - 14505197
Alignment:
| Q |
18 |
aaatttgctaaaacttaacagaatgatgtagtagttcacaattagatgaacatnnnnnnntgtgtatactataactatagt----agtgaattttgaaga |
113 |
Q |
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| T |
14504845 |
aaatttgctaaaatttaacagaatgatgtagtagttcacaattagatgaacataaaaaaat-----taatataactatagtctatagtgaattttgaaga |
14504939 |
T |
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| Q |
114 |
caattgtggaattaatcaattgtcaataggtaaagagagcatgcgtgaaggctgaagggtggataagcctattgtgggaaagtgcctctatttaatgcat |
213 |
Q |
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| T |
14504940 |
caattgtggaattaatcaattgtcaataggtaaagagtgcatgcgtgaaggctgaagggtggataagcctattgtgggaaagtgcctctatttaatgcat |
14505039 |
T |
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| Q |
214 |
agttgtggaaattaattaaaggcaaaatttagatgcattttcttgtataactgcggaatatagacatgcatgttacagctgaataggtttccatatgcat |
313 |
Q |
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| T |
14505040 |
agttgtggaaattaattaaaggcaatatttagatgcattttcttgtataactgcggaatatggacatgcatgttacagctgaataggtttctatatgcat |
14505139 |
T |
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| Q |
314 |
gattgattgcacattttgtcagagaagaacgtgggtctttgtttattacaaatgatga |
371 |
Q |
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| T |
14505140 |
gattgattacacattttgtcagagaagaacgtgggtctttgtttattacaaatgatga |
14505197 |
T |
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