View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2725_low_15 (Length: 358)
Name: NF2725_low_15
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2725_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 339
Target Start/End: Original strand, 50751182 - 50751523
Alignment:
| Q |
11 |
tgagatgaacaaaatggcattcaatgataaaattgatgaactctatggtttctccttcagcaaagaagctaatccagtcacaatcttcattcctctttca |
110 |
Q |
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| T |
50751182 |
tgagatgaacaaaatggcattcaatgataaaattgatgaactctatggtttctccttcagcaaagaagctaatccagtcacaatcttcattcctctttca |
50751281 |
T |
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| Q |
111 |
ccactcttcggtttcaccgccggtaactgccacgctggactcgccgtcgctgttttcgccgcctccgacacgacggtgccgatctgcttcaaccggtcct |
210 |
Q |
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| T |
50751282 |
ccactcttcggtttcaccgccggtaactgccacgctggactcgccgtcgctgttttcgccgcctccgacacgacggtgccgatctgcttcaaccggtcct |
50751381 |
T |
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| Q |
211 |
ttttgcagacaaaaatatacggaagcggttgaagaattgtcttatactgactatttgaaaattg-------------cttgatttggatttaaaagcttg |
297 |
Q |
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| T |
50751382 |
ttttgcagacgaaaatatacggaagcgattgaagaattgtcttatactgactatttgaaaattgcttgatttggattcttgatttggatttaaaagcttg |
50751481 |
T |
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| Q |
298 |
ggttgttattgatttggattttgcagattatgatgttttttg |
339 |
Q |
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| T |
50751482 |
ggttgttattgatttggattttgcagattatgatgttttttg |
50751523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 339
Target Start/End: Complemental strand, 4323335 - 4322994
Alignment:
| Q |
11 |
tgagatgaacaaaatggcattcaatgataaaattgatgaactctatggtttctccttcagcaaagaagctaatccagtcacaatcttcattcctctttca |
110 |
Q |
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| T |
4323335 |
tgagatgaacaaaatggcattcaatgataaaattgatgaactctatggtttctccttcagcaaagaagctaatccagtcacaatcttcattcctctttca |
4323236 |
T |
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| Q |
111 |
ccactcttcggtttcaccgccggtaactgccacgctggactcgccgtcgctgttttcgccgcctccgacacgacggtgccgatctgcttcaaccggtcct |
210 |
Q |
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| T |
4323235 |
ccactcttcggtttcaccgccggtaactgccacgctggactcgccgtcgctgttttcgccgcctccgacacgacggtgccgatctgcttcaaccggtcct |
4323136 |
T |
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| Q |
211 |
ttttgcagacaaaaatatacggaagcggttgaagaattgtcttatactgactatttgaaaattgcttgatttg-------------gatttaaaagcttg |
297 |
Q |
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| T |
4323135 |
ttttgcagacgaaaatatacggaagcgattgaagaattgtcttatactgactatttgaaaattgcttgatttggattcttgatttggatttaaaagcttg |
4323036 |
T |
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| Q |
298 |
ggttgttattgatttggattttgcagattatgatgttttttg |
339 |
Q |
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| T |
4323035 |
ggttgttattgatttggattttgcagattatgatgttttttg |
4322994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 52 - 163
Target Start/End: Original strand, 15287563 - 15287674
Alignment:
| Q |
52 |
tctatggtttctccttcagcaaagaagctaatccagtcacaatcttcattcctctttcaccactcttcggtttcaccgccggtaactgccacgctggact |
151 |
Q |
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| T |
15287563 |
tctatggtttctccttcagcaaagaggctaatccagtcacaaccttcattcctctttcaccactcttcggtttcaccgccggtaactgccacgcaggact |
15287662 |
T |
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| Q |
152 |
cgccgtcgctgt |
163 |
Q |
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|||| ||||||| |
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| T |
15287663 |
cgccatcgctgt |
15287674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 165 - 262
Target Start/End: Original strand, 15287898 - 15287995
Alignment:
| Q |
165 |
ttcgccgcctccgacacgacggtgccgatctgcttcaaccggtcctttttgcagacaaaaatatacggaagcggttgaagaattgtcttatactgact |
262 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| |||||||||||||| |
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| T |
15287898 |
ttcgccgcctccgacacgacggtgacgatctgcttcaaccggtcctttttgccgacgaaaatatacggaagcgattgaagaatcgtcttatactgact |
15287995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 165 - 328
Target Start/End: Original strand, 46899623 - 46899767
Alignment:
| Q |
165 |
ttcgccgcctccgacacgacggtgccgatctgcttcaaccggtcctttttgcagacaaaaatatacggaagcggttgaagaattgtcttatactgactat |
264 |
Q |
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|||| |||||| ||||||| |||| |||||| ||| ||||||||||||| || ||| |||||||||||||||| ||||||||||||||||||| |
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| T |
46899623 |
ttcgtcgcctcagacacgatggtgacgatctactttaaccggtccttttggccgacgaaaatatacggaagcgattgaagaattgtcttatac------- |
46899715 |
T |
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| Q |
265 |
ttgaaaattgcttgatttggatttaaaagcttgggttgttattgatttggattttgcagattat |
328 |
Q |
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| T |
46899716 |
------------tgatttggatttaaaagcttgggtggttattgatttggattttgcagattat |
46899767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 46899321 - 46899389
Alignment:
| Q |
83 |
tccagtcacaatcttcattcctctttcaccactcttcggtttcaccgccggtaactgccacgctggact |
151 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
46899321 |
tccagtcacaaccttcattcctctttcaccaatcttcggtttcaccgccggtaactgccacactggact |
46899389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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