View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2725_low_16 (Length: 342)
Name: NF2725_low_16
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2725_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 6 - 188
Target Start/End: Complemental strand, 14497547 - 14497365
Alignment:
| Q |
6 |
gaagaaaattaagaagacgtgttagaagggacacaaatagcaatggacatgaggtatatgcaaatgcaatgcaatttctgaaaattcacaccaagaaatt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14497547 |
gaagaaaattaagaagacgtgttagaagggacacaaatagcaatggacatgaggtatatgcaaatgcaatgcaatttctgaaaattcacaccaagaaatt |
14497448 |
T |
|
| Q |
106 |
aaagtttctgtttgttttttaagtttattaaannnnnnnggttcatcaaatgaagcaagacattattaacaaacaaatatact |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14497447 |
aaagtttctgtttgttttttaagtttattaaatttttttggttcatcaaatgaagcaagacattattaacaaccaaatatact |
14497365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 255 - 328
Target Start/End: Complemental strand, 14497283 - 14497210
Alignment:
| Q |
255 |
ggtatgaaaatgagtattcatggaagcaagaacaataaattttgagtagttggaatttcattgatgatgaaact |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14497283 |
ggtatgaaaatgagtattcatggaagcaagaacaataaattttgagtagtgggaatttcattgatgatgaaact |
14497210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University