View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2725_low_19 (Length: 312)

Name: NF2725_low_19
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2725_low_19
NF2725_low_19
[»] chr5 (4 HSPs)
chr5 (10-130)||(14506079-14506199)
chr5 (230-312)||(14505254-14505338)
chr5 (196-233)||(14506043-14506080)
chr5 (146-190)||(38015916-38015960)
[»] chr8 (1 HSPs)
chr8 (133-190)||(23141766-23141823)
[»] chr2 (2 HSPs)
chr2 (133-190)||(3395423-3395480)
chr2 (146-190)||(36727617-36727661)
[»] chr4 (1 HSPs)
chr4 (146-190)||(13228751-13228795)
[»] chr6 (1 HSPs)
chr6 (133-190)||(1599741-1599798)
[»] chr3 (1 HSPs)
chr3 (133-190)||(50331929-50331986)


Alignment Details
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 14506199 - 14506079
Alignment:
Q  10 aatatttttacttatagtcaaagaatttgtgttgggaattccggggagtcnnnnnnnttaaggtaaatcatcgcattgaattaagatcaaccgcaagcga 109  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||       ||  |||||||||||||||||||||||||||||||| ||||||    
T  14506199 aataattttacttatagtcaaagaatttgtgttgggaatttcggggagtcaaaaaaatttgggtaaatcatcgcattgaattaagatcaaccgtaagcga 14506100  T
Q  110 attttgatatcatatttttat 130  Q
    |||||||||||||||||||||    
T  14506099 attttgatatcatatttttat 14506079  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 230 - 312
Target Start/End: Complemental strand, 14505338 - 14505254
Alignment:
Q  230 attaaccttcttaatatacatgttaattccttagtgtatatgttcc--ttcaatccaatatttgtttatagcatttgatgattct 312  Q
    |||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||| ||| ||||    
T  14505338 attaaccttcttaatatacatgttaattccttagtgcatatgttcctattcaatccaatatttgtttatagcatttcatgcttct 14505254  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 14506080 - 14506043
Alignment:
Q  196 atcaaatattcaatttctaactcacatttaacatatta 233  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  14506080 atcaaatattcaatttctaactcacatttaacacatta 14506043  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 38015916 - 38015960
Alignment:
Q  146 attagatatataagtcatctcatttatatgtttcttaacatctac 190  Q
    ||||||||||| |||||||||| ||||||||| || |||||||||    
T  38015916 attagatatatgagtcatctcacttatatgttgctcaacatctac 38015960  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 23141766 - 23141823
Alignment:
Q  133 aaaatctttaaatattagatatataagtcatctcatttatatgtttcttaacatctac 190  Q
    |||||||| | | |||||||| || ||||||||||||||||||||||| |||||||||    
T  23141766 aaaatcttaagacattagatacatgagtcatctcatttatatgtttctcaacatctac 23141823  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 3395423 - 3395480
Alignment:
Q  133 aaaatctttaaatattagatatataagtcatctcatttatatgtttcttaacatctac 190  Q
    |||||||| | | ||||||||||| |||||||||| |||||||||||| |||||||||    
T  3395423 aaaatcttaagacattagatatatgagtcatctcacttatatgtttctcaacatctac 3395480  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 36727617 - 36727661
Alignment:
Q  146 attagatatataagtcatctcatttatatgtttcttaacatctac 190  Q
    ||||| ||||| ||||||||||  |||||||||||||||||||||    
T  36727617 attagctatattagtcatctcacatatatgtttcttaacatctac 36727661  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 13228795 - 13228751
Alignment:
Q  146 attagatatataagtcatctcatttatatgtttcttaacatctac 190  Q
    ||||||||||| |||||||||| |||||||||||| |||||||||    
T  13228795 attagatatatgagtcatctcacttatatgtttctcaacatctac 13228751  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 1599798 - 1599741
Alignment:
Q  133 aaaatctttaaatattagatatataagtcatctcatttatatgtttcttaacatctac 190  Q
    |||||||| | | |||||||| || |||||||||| |||||||||||| |||||||||    
T  1599798 aaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatctac 1599741  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 50331929 - 50331986
Alignment:
Q  133 aaaatctttaaatattagatatataagtcatctcatttatatgtttcttaacatctac 190  Q
    |||||||| | | |||||||| || |||||||||| |||||||||||| |||||||||    
T  50331929 aaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatctac 50331986  T

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