View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2725_low_20 (Length: 291)

Name: NF2725_low_20
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2725_low_20
NF2725_low_20
[»] chr2 (2 HSPs)
chr2 (66-291)||(34101172-34101407)
chr2 (1-48)||(285398-285445)
[»] chr8 (5 HSPs)
chr8 (1-45)||(6849398-6849442)
chr8 (1-48)||(11114596-11114643)
chr8 (1-48)||(24116137-24116184)
chr8 (1-48)||(10184055-10184102)
chr8 (4-46)||(45238632-45238674)
[»] chr4 (4 HSPs)
chr4 (1-48)||(44250156-44250203)
chr4 (1-47)||(52911717-52911763)
chr4 (1-48)||(6239461-6239508)
chr4 (1-48)||(48722166-48722213)
[»] chr5 (2 HSPs)
chr5 (10-48)||(8897488-8897526)
chr5 (5-46)||(37425678-37425719)
[»] chr1 (3 HSPs)
chr1 (1-47)||(1156575-1156621)
chr1 (2-48)||(29632530-29632576)
chr1 (3-47)||(49906584-49906628)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 66 - 291
Target Start/End: Original strand, 34101172 - 34101407
Alignment:
Q  66 aatcagaaattcaaaatgcaacaatctccttccgttcccgcttccacaccgcc----------accgttccccgcaaaatcggcgtcgcagtcgacctct 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||          ||| |||||||||||||||||||||||||||||||||    
T  34101172 aatcagaaattcaaaatgcaacaatctccttccgttcccgcttccacaccgccgcaaaccgccacctttccccgcaaaatcggcgtcgcagtcgacctct 34101271  T
Q  156 ccgacgagagttcatacaccgtcacatgggcaatccaacaccacatccaaccacacgacaccgtagtcctcctccacgtctgcaccacgactcacgacaa 255  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  34101272 ccgacaagagttcatacaccgtcacatgggcaatccaacaccacatccaaccccacgacaccgtagtcctcctccacgtctgcaccacgacacacgacaa 34101371  T
Q  256 caacgacaccgacgaaatgaagaagatgaaaaacta 291  Q
    ||||||||||||||||||||||||||||||||||||    
T  34101372 caacgacaccgacgaaatgaagaagatgaaaaacta 34101407  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 285445 - 285398
Alignment:
Q  1 tctctattatttttgatcaatagaaatagaggaaatggaagttgtcat 48  Q
    |||||||||||||||| |||||||||||||| |||| |||||||||||    
T  285445 tctctattatttttgaccaatagaaatagagaaaattgaagttgtcat 285398  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6849442 - 6849398
Alignment:
Q  1 tctctattatttttgatcaatagaaatagaggaaatggaagttgt 45  Q
    |||||||||||||| | ||||||||||||||||||||||||||||    
T  6849442 tctctattattttttaccaatagaaatagaggaaatggaagttgt 6849398  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 11114643 - 11114596
Alignment:
Q  1 tctctattatttttgatcaatagaaatagaggaaatggaagttgtcat 48  Q
    |||||||||||||||| |||||||||||||| |||| |||||||||||    
T  11114643 tctctattatttttgaccaatagaaatagagaaaattgaagttgtcat 11114596  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 24116137 - 24116184
Alignment:
Q  1 tctctattatttttgatcaatagaaatagaggaaatggaagttgtcat 48  Q
    |||||||||||||||| |||||||||||||| |||| |||||||||||    
T  24116137 tctctattatttttgaccaatagaaatagagaaaattgaagttgtcat 24116184  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10184102 - 10184055
Alignment:
Q  1 tctctattatttttgatcaatagaaatagaggaaatggaagttgtcat 48  Q
    |||||||||||||||| ||||| |||||||| |||| |||||||||||    
T  10184102 tctctattatttttgaccaataaaaatagagaaaattgaagttgtcat 10184055  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 45238632 - 45238674
Alignment:
Q  4 ctattatttttgatcaatagaaatagaggaaatggaagttgtc 46  Q
    ||||||||||| | ||||| |||||||||||||||||||||||    
T  45238632 ctattattttttaccaataaaaatagaggaaatggaagttgtc 45238674  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 44250203 - 44250156
Alignment:
Q  1 tctctattatttttgatcaatagaaatagaggaaatggaagttgtcat 48  Q
    |||||||||||||||| |||||||||||||| |||| |||||||||||    
T  44250203 tctctattatttttgaccaatagaaatagagaaaattgaagttgtcat 44250156  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 52911763 - 52911717
Alignment:
Q  1 tctctattatttttgatcaatagaaatagaggaaatggaagttgtca 47  Q
    |||||||||||||||| |||||||||||||| |||| ||||||||||    
T  52911763 tctctattatttttgaccaatagaaatagagaaaattgaagttgtca 52911717  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6239461 - 6239508
Alignment:
Q  1 tctctattatttttgatcaatagaaatagaggaaatggaagttgtcat 48  Q
    |||||||||||||||| ||||| |||||||| |||| |||||||||||    
T  6239461 tctctattatttttgaccaataaaaatagagaaaattgaagttgtcat 6239508  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 48722166 - 48722213
Alignment:
Q  1 tctctattatttttgatcaatagaaatagaggaaatggaagttgtcat 48  Q
    |||||||||||||||| |||||||||||||| |||| ||| |||||||    
T  48722166 tctctattatttttgaccaatagaaatagagaaaattgaaattgtcat 48722213  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 8897488 - 8897526
Alignment:
Q  10 tttttgatcaatagaaatagaggaaatggaagttgtcat 48  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  8897488 tttttgatcaatagaaaaagaggaaaaggaagttgtcat 8897526  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 37425719 - 37425678
Alignment:
Q  5 tattatttttgatcaatagaaatagaggaaatggaagttgtc 46  Q
    |||||||||||| |||||||||||||| |||| |||||||||    
T  37425719 tattatttttgaccaatagaaatagagaaaattgaagttgtc 37425678  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1156575 - 1156621
Alignment:
Q  1 tctctattatttttgatcaatagaaatagaggaaatggaagttgtca 47  Q
    |||||||||||||||  |||||||||||||| |||| ||||||||||    
T  1156575 tctctattatttttgtccaatagaaatagagaaaattgaagttgtca 1156621  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 29632530 - 29632576
Alignment:
Q  2 ctctattatttttgatcaatagaaatagaggaaatggaagttgtcat 48  Q
    ||||||||||||||| ||||| |||||||| |||| |||||||||||    
T  29632530 ctctattatttttgaccaataaaaatagagaaaattgaagttgtcat 29632576  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 49906584 - 49906628
Alignment:
Q  3 tctattatttttgatcaatagaaatagaggaaatggaagttgtca 47  Q
    |||||||||||| | |||||||||||||| |||| ||||||||||    
T  49906584 tctattattttttaccaatagaaatagagaaaattgaagttgtca 49906628  T

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