View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2725_low_22 (Length: 264)
Name: NF2725_low_22
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2725_low_22 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: scaffold0049 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 45944 - 45824
Alignment:
| Q |
9 |
gaaatgaaacacacaagttgaacaaatagaataacatgataaattagtaggattcatatgttttttgcattttgaacaaattaaatagatgctaaaaaat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| |
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| T |
45944 |
gaaatgaaacacacaagttgaacaaatagaataacatgataaattagtaggattcatatgttttttgcattttgaacaaattgaacagatactaaaaaat |
45845 |
T |
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| Q |
109 |
ctgaagcgaaccatttacaac |
129 |
Q |
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||||||| ||||||||||||| |
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| T |
45844 |
ctgaagccaaccatttacaac |
45824 |
T |
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Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 29636283 - 29636162
Alignment:
| Q |
9 |
gaaatgaaacacacaagttgaacaaatagaataacatgataaattagtaggattcatatgtt-ttttgcattttgaacaaattaaatagatgctaaaaaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||| |||||||| |
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| T |
29636283 |
gaaatgaaacacacaagttgaacaaatagaataacatgataaattagtaggattcatatgtttttttgcattttgaacaaattgaacagatactaaaaaa |
29636184 |
T |
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| Q |
108 |
tctgaagcgaaccatttacaac |
129 |
Q |
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|||||||||||||||||||||| |
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| T |
29636183 |
tctgaagcgaaccatttacaac |
29636162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 29635539 - 29635498
Alignment:
| Q |
157 |
ttggaaagtgcatcccctcatcactaagtgcctccgccactg |
198 |
Q |
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|||| ||||||||||||||||||||| || |||||||||||| |
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| T |
29635539 |
ttggcaagtgcatcccctcatcactatgtacctccgccactg |
29635498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 41501284 - 41501405
Alignment:
| Q |
9 |
gaaatgaaacacacaagttgaacaaatagaataacatgataaattagtaggattcatatg-ttttttgcattttgaacaaattaaatagatgctaaaaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||| |||||||| |
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| T |
41501284 |
gaaatgaaacacacaagttgaacaaatagaataacatgataaattagtaggattcatatgtttttttgcattttgaacaaattgaacagatactaaaaaa |
41501383 |
T |
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| Q |
108 |
tctgaagcgaaccatttacaac |
129 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
41501384 |
tctgaagcgaaccatttacaac |
41501405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 41501995 - 41502036
Alignment:
| Q |
157 |
ttggaaagtgcatcccctcatcactaagtgcctccgccactg |
198 |
Q |
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|||| ||||||||||||||| ||||| ||||||||||||||| |
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| T |
41501995 |
ttggcaagtgcatcccctcagcactatgtgcctccgccactg |
41502036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 33053377 - 33053498
Alignment:
| Q |
9 |
gaaatgaaacacacaagttgaacaaatagaataacatgataaattagtaggattcatatg-ttttttgcattttgaacaaattaaatagatgctaaaaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||| |||||||| |
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| T |
33053377 |
gaaatgaaacacacaagttgaacaaatagaataacatgataaattagtaggattcatatgtttttttgcattttgaacaaattgaacagatactaaaaaa |
33053476 |
T |
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| Q |
108 |
tctgaagcgaaccatttacaac |
129 |
Q |
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|||||||||||||||||||||| |
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|
| T |
33053477 |
tctgaagcgaaccatttacaac |
33053498 |
T |
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