View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2725_low_24 (Length: 253)
Name: NF2725_low_24
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2725_low_24 |
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| [»] scaffold0187 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 4012385 - 4012143
Alignment:
| Q |
1 |
ttgttacttaatttagtgggaaaaggctttggttgttattgtttgaatgtattgatgttgagtttgactcacattcatgataagtagacaggcgcttgac |
100 |
Q |
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| T |
4012385 |
ttgttacttaatttagtgggaaaaggctttggttgttattgtttgaatgtattaatgttgagtttgactcacattcatgataagtaggcaggcgcttgac |
4012286 |
T |
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| Q |
101 |
cgcagcataggggtaaacttgtaatatggaatgtagcatttaatcacaactttgtactttgtaaccttaagcaatgcataatagaaaacaacaacggcca |
200 |
Q |
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| T |
4012285 |
cgcagcataggggtaaacttgtaatatggaatgtagcatttaatcacaactttgtactttgtaaccttaagcaatgcataatagaaaacaacaacggcca |
4012186 |
T |
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| Q |
201 |
ctttgttttttgtagtcataggctcaattgaccaaactctgtg |
243 |
Q |
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| T |
4012185 |
ctttgttttttgtagtcataggctcaattgaccaaactctgtg |
4012143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 13976811 - 13977053
Alignment:
| Q |
1 |
ttgttacttaatttagtgggaaaaggctttggttgttattgtttgaatgtattgatgttgagtttgactcacattcatgataagtagacaggcgcttgac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13976811 |
ttgttacttaatttagtgggaaaaggctttggttgttattgtttgaatgtatttatgttgagtttgactcacattcatgataagtaggcaggcgcttgac |
13976910 |
T |
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| Q |
101 |
cgcagcataggggtaaacttgtaatatggaatgtagcatttaatcacaactttgtactttgtaaccttaagcaatgcataatagaaaacaacaacggcca |
200 |
Q |
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| T |
13976911 |
cgcagcataggggtaaacttgtaatatggaatgtagcatttaatcacaactttgtactttgtaaccttaagcaatgcataatagaaaacaacaacggcca |
13977010 |
T |
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| Q |
201 |
ctttgttttttgtagtcataggctcaattgaccaaactctgtg |
243 |
Q |
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| T |
13977011 |
ctttgttttttgtagtcttaggctcaattgaccaaactctgtg |
13977053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 2086 - 2010
Alignment:
| Q |
111 |
gggtaaacttgtaatatggaatgtagcatttaatcacaactttgtactttgtaaccttaagcaatgcataatagaaaa |
188 |
Q |
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|||||||||||||||||||| |||| ||| |||||||| |||||| ||||||||| ||| || |||||||||||||| |
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| T |
2086 |
gggtaaacttgtaatatggatagtagtattgaatcacaa-tttgtagtttgtaaccctaaacattgcataatagaaaa |
2010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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