View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2725_low_25 (Length: 253)
Name: NF2725_low_25
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2725_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 43990368 - 43990603
Alignment:
| Q |
1 |
atttatatcagtagatgaactcaaataattaagtcaatccaaacaggctagttttttcaaacaaattgattgtgatgttgataatttttagttgtaatga |
100 |
Q |
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| T |
43990368 |
atttatatcagtagatgaactcaaataattaagtcaatccaaacaggctagttttttcaaacaaattgattgtgatgttgataatttttagttgtaatga |
43990467 |
T |
|
| Q |
101 |
gaagggcatgcatagatgtttaagcatacatatacatatattgttaaggctaaatagagaaacaaattactcttgcaagtgcagatgcaaattgtgagtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43990468 |
gaagggcatgcatagatgtttaagcatacatatacatatattgttaaggctaaatagagaaacaaattactcttgcaagtgcagatgcaaattgtgagtc |
43990567 |
T |
|
| Q |
201 |
cattgtctctgcatgtaaagttaaaacacaactaat |
236 |
Q |
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| T |
43990568 |
cattgtctctgcatgtaaagttaaaacacaactaat |
43990603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 200
Target Start/End: Complemental strand, 43902733 - 43902593
Alignment:
| Q |
53 |
tttttcaaacaaattgattgtgatgttgataatttttagttgtaatgagaagggcatgcatagatgtttaagcatacatatacatatattgttaaggcta |
152 |
Q |
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| T |
43902733 |
tttttccaacaaattgatt-tgaagttgataatttgtaattgtaatgagaaagatatacatagattgttaagcata------catagattgtgaagctta |
43902641 |
T |
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| Q |
153 |
aatagagaaacaaattactcttgcaagtgcagatgcaaattgtgagtc |
200 |
Q |
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| T |
43902640 |
tatagacaaacaaattactcatgcaagtatagatgcaaattgcgagtc |
43902593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 42415606 - 42415559
Alignment:
| Q |
69 |
attgtgatgttgataatttttagttgtaatgagaagggcatgcataga |
116 |
Q |
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| T |
42415606 |
attgtgatgttgataatttgtaattgtaatgagaaaggcatacataga |
42415559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 43993240 - 43993278
Alignment:
| Q |
183 |
agatgcaaattgtgagtccattgtctctgcatgtaaagt |
221 |
Q |
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| T |
43993240 |
agatgcaaattatgagtccattgtttctgcatgtaaagt |
43993278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 42694878 - 42694821
Alignment:
| Q |
162 |
acaaattactcttgcaagtgcagatgcaaattgtgagtccattgtctctgcatgtaaa |
219 |
Q |
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|||||| ||||||||||||| ||||| |||||||||||||| ||| | |||| ||||| |
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| T |
42694878 |
acaaataactcttgcaagtgtagatgaaaattgtgagtccactgtttttgcaagtaaa |
42694821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 8831632 - 8831696
Alignment:
| Q |
53 |
tttttcaaacaaattgattgtgatgttgataatttttagttgtaatgagaagggcatgcatagat |
117 |
Q |
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| T |
8831632 |
tttttccaacaaattgattgtgatgttgatcattagtaatagtagtgagaaaggcatacatagat |
8831696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 45088492 - 45088548
Alignment:
| Q |
61 |
acaaattgattgtgatgttgataatttttagttgtaatgagaagggcatgcatagat |
117 |
Q |
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| T |
45088492 |
acaaattgactgtgatgttaatagtttgtaattgtaatgagaaagacatgcatagat |
45088548 |
T |
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