View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2725_low_34 (Length: 227)

Name: NF2725_low_34
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2725_low_34
NF2725_low_34
[»] chr2 (19 HSPs)
chr2 (1-227)||(14912891-14913116)
chr2 (124-227)||(24536585-24536688)
chr2 (130-227)||(9183984-9184081)
chr2 (130-227)||(17973917-17974014)
chr2 (86-227)||(30652302-30652443)
chr2 (130-227)||(44630050-44630147)
chr2 (130-227)||(25483337-25483434)
chr2 (130-227)||(25490943-25491040)
chr2 (89-227)||(44758910-44759049)
chr2 (153-225)||(27567015-27567087)
chr2 (85-227)||(13290248-13290391)
chr2 (89-227)||(42727758-42727897)
chr2 (86-219)||(15445867-15446001)
chr2 (102-169)||(22845528-22845595)
chr2 (102-227)||(27441858-27441983)
chr2 (128-227)||(3175413-3175511)
chr2 (86-146)||(27557496-27557556)
chr2 (52-84)||(28272583-28272615)
chr2 (185-227)||(32080547-32080589)
[»] scaffold0061 (1 HSPs)
scaffold0061 (86-225)||(48452-48591)
[»] scaffold0017 (1 HSPs)
scaffold0017 (86-225)||(150042-150181)
[»] scaffold0060 (1 HSPs)
scaffold0060 (93-225)||(51407-51539)
[»] chr4 (22 HSPs)
chr4 (89-225)||(24491130-24491266)
chr4 (86-225)||(7899449-7899588)
chr4 (86-227)||(37263130-37263271)
chr4 (135-227)||(33467628-33467720)
chr4 (132-227)||(13060898-13060993)
chr4 (89-227)||(8984595-8984734)
chr4 (89-227)||(13696156-13696295)
chr4 (89-227)||(21304143-21304282)
chr4 (89-227)||(36354959-36355098)
chr4 (89-227)||(39999887-40000026)
chr4 (130-227)||(19103407-19103504)
chr4 (124-227)||(8028897-8029000)
chr4 (89-227)||(13701276-13701415)
chr4 (89-227)||(54992240-54992379)
chr4 (85-205)||(19907674-19907794)
chr4 (85-227)||(17681663-17681806)
chr4 (89-227)||(54344021-54344160)
chr4 (89-227)||(13711769-13711908)
chr4 (86-219)||(12875724-12875858)
chr4 (87-161)||(29348981-29349055)
chr4 (89-227)||(13687502-13687641)
chr4 (93-160)||(17681895-17681963)
[»] scaffold0015 (1 HSPs)
scaffold0015 (86-225)||(212865-213004)
[»] chr8 (12 HSPs)
chr8 (86-225)||(21959844-21959983)
chr8 (89-218)||(19431075-19431204)
chr8 (89-218)||(19567224-19567353)
chr8 (93-225)||(8329873-8330005)
chr8 (86-227)||(4241572-4241713)
chr8 (130-227)||(17021697-17021794)
chr8 (130-227)||(17552134-17552231)
chr8 (89-227)||(21648392-21648531)
chr8 (124-227)||(28860201-28860304)
chr8 (89-227)||(32011344-32011483)
chr8 (132-225)||(4540984-4541077)
chr8 (121-161)||(7005115-7005155)
[»] chr6 (10 HSPs)
chr6 (89-218)||(17289229-17289358)
chr6 (86-218)||(10486134-10486266)
chr6 (89-225)||(19479178-19479314)
chr6 (86-227)||(16834728-16834869)
chr6 (126-227)||(19992975-19993076)
chr6 (110-227)||(22694013-22694130)
chr6 (89-227)||(22702556-22702695)
chr6 (171-227)||(5496362-5496418)
chr6 (128-227)||(29514606-29514705)
chr6 (86-227)||(12797337-12797484)
[»] chr7 (12 HSPs)
chr7 (86-226)||(7018152-7018292)
chr7 (86-226)||(7033510-7033650)
chr7 (126-227)||(10391661-10391762)
chr7 (86-227)||(12802668-12802809)
chr7 (132-226)||(2596202-2596296)
chr7 (86-227)||(15975255-15975397)
chr7 (89-227)||(47994618-47994757)
chr7 (89-227)||(33238821-33238960)
chr7 (89-227)||(17496499-17496638)
chr7 (89-227)||(17556576-17556715)
chr7 (130-227)||(15233978-15234075)
chr7 (193-225)||(20474205-20474237)
[»] scaffold0070 (2 HSPs)
scaffold0070 (90-225)||(59871-60006)
scaffold0070 (90-225)||(64073-64208)
[»] scaffold0011 (1 HSPs)
scaffold0011 (89-225)||(2668-2804)
[»] scaffold0067 (1 HSPs)
scaffold0067 (86-224)||(32926-33064)
[»] chr5 (15 HSPs)
chr5 (86-227)||(36425026-36425167)
chr5 (86-227)||(41998103-41998244)
chr5 (130-227)||(558201-558298)
chr5 (130-227)||(36940756-36940853)
chr5 (86-227)||(39519773-39519914)
chr5 (130-227)||(26668710-26668806)
chr5 (130-227)||(26940307-26940403)
chr5 (89-227)||(17505721-17505860)
chr5 (89-227)||(24775668-24775807)
chr5 (89-227)||(42020630-42020769)
chr5 (89-227)||(41854237-41854376)
chr5 (153-227)||(41318897-41318971)
chr5 (89-159)||(42020339-42020410)
chr5 (127-227)||(17550058-17550158)
chr5 (126-226)||(25688165-25688265)
[»] chr3 (13 HSPs)
chr3 (86-227)||(3674027-3674168)
chr3 (130-227)||(18468644-18468741)
chr3 (86-227)||(8884631-8884772)
chr3 (86-227)||(12970376-12970517)
chr3 (86-227)||(23664688-23664829)
chr3 (89-227)||(20094924-20095063)
chr3 (109-223)||(27604064-27604178)
chr3 (89-227)||(3481257-3481396)
chr3 (89-227)||(15767329-15767468)
chr3 (132-225)||(16452890-16452983)
chr3 (89-227)||(17358964-17359103)
chr3 (109-161)||(12564907-12564959)
chr3 (109-161)||(13259306-13259358)
[»] chr1 (9 HSPs)
chr1 (86-227)||(10136713-10136854)
chr1 (86-227)||(25845144-25845285)
chr1 (89-227)||(5725764-5725903)
chr1 (89-227)||(27712089-27712228)
chr1 (89-227)||(37408726-37408865)
chr1 (110-223)||(16037025-16037139)
chr1 (91-224)||(27306973-27307107)
chr1 (126-227)||(11807625-11807726)
chr1 (86-168)||(41862260-41862343)
[»] scaffold0014 (1 HSPs)
scaffold0014 (89-227)||(27191-27330)
[»] scaffold0108 (1 HSPs)
scaffold0108 (130-227)||(21240-21337)
[»] scaffold0166 (1 HSPs)
scaffold0166 (89-227)||(18051-18190)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 14913116 - 14912891
Alignment:
Q  1 aatcaactgtgacatggcacaaaattgaatctgatggttctgttnnnnnnngcaattcgaaggtgtcggtgtacaatcattccaaaacgctctaggaatt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14913116 aatcaactgtgacatgacacaaaattgaatctgatggttctgttaaaaaaagcaattcgaaggtgtcggtgtacaatcattccagaacgctctaggaatt 14913017  T
Q  101 ctgcctcgaaattccataggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagta 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14913016 ctgcctcgaaattccataggactggcctcagttccacattcgtataggcaaatc-atcaagggtactcgcgtagctatgtaccccactcaacatagagta 14912918  T
Q  201 tatatctcattaagagtttctattatc 227  Q
    ||||||||||||||||||| |||||||    
T  14912917 tatatctcattaagagtttttattatc 14912891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 24536688 - 24536585
Alignment:
Q  124 gacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctat 223  Q
    ||||||||||||||||||||||||| |||| ||||||| ||||||  | |||||||||| ||||||||||||||||||| |||||||||||| |||||||    
T  24536688 gacctcagttccacattcgtataggtgaatatatcaagagtactcctgcagctatgtactccactcaacatagagtatagatctcattaagattttctat 24536589  T
Q  224 tatc 227  Q
    ||||    
T  24536588 tatc 24536585  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 9184081 - 9183984
Alignment:
Q  130 agttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||||||||||||||||| || ||||||||| ||||||  ||||||| |||| |||||| |||||||||||| ||||||||||||||||||||||||    
T  9184081 agttccacattcgtataggtgagtctatcaagagtactcctgtagctaggtactccactccacatagagtatagatctcattaagagtttctattatc 9183984  T

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Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 17974014 - 17973917
Alignment:
Q  130 agttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||||||||||||||||| || ||||||||| ||||||  ||||||| |||| |||||| |||||||||||| ||||||||||||||||||||||||    
T  17974014 agttccacattcgtataggtgagtctatcaagagtactcctgtagctaggtactccactccacatagagtatagatctcattaagagtttctattatc 17973917  T

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Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 86 - 227
Target Start/End: Original strand, 30652302 - 30652443
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggact-gacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccc 184  Q
    |||| |||||| |||||||| |||| | |||||||| | | ||| ||||||||||||| ||||| || ||||||||| ||||||  ||||||| |||| |    
T  30652302 aacgttctaggtattctgccccgaa-taccataggaatcggcctaagttccacattcgcataggtgagtctatcaagagtactcctgtagctaggtactc 30652400  T
Q  185 cactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||| |||||||||||| ||||||||||||||||||||||||    
T  30652401 cactccacatagagtatagatctcattaagagtttctattatc 30652443  T

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Target: chr2; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 44630147 - 44630050
Alignment:
Q  130 agttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||||||||| |||||||||| ||||||||| ||||||   ||| ||||||| |||||| |||||||||||| ||||||||||||||||||||||||    
T  44630147 agttccacatttgtataggcgagtctatcaagagtactcctttagttatgtactccactccacatagagtatagatctcattaagagtttctattatc 44630050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 25483434 - 25483337
Alignment:
Q  130 agttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||||||||||||||||| || | ||||||| || |||  |||||||||||| |||||| || ||||||||| ||||||||||||||||||||||||    
T  25483434 agttccacattcgtataggtgagtatatcaagagtgctcatgtagctatgtactccactccacgtagagtatagatctcattaagagtttctattatc 25483337  T

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Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 25491040 - 25490943
Alignment:
Q  130 agttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||||||||||||||||| || | ||||||| || |||  |||||||||||| |||||| || ||||||||| ||||||||||||||||||||||||    
T  25491040 agttccacattcgtataggtgagtatatcaagagtgctcatgtagctatgtactccactccacgtagagtatagatctcattaagagtttctattatc 25490943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 44759049 - 44758910
Alignment:
Q  89 gctctaggaattctgcctcgaaattccat-aggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    ||||||||||||||||||||||||||||| || || | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  44759049 gctctaggaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 44758950  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |   |||||| ||||||||||||||||||||||||    
T  44758949 tccataagaagtatagatctcattaagagtttctattatc 44758910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 27567015 - 27567087
Alignment:
Q  153 tctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctatta 225  Q
    |||||||| |||| ||  |||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  27567015 tctatcaatggtaatcatgtagctatgtaccccactcaacatagagtataaatctcattaagattttctatta 27567087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 227
Target Start/End: Complemental strand, 13290391 - 13290248
Alignment:
Q  85 aaacgctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtacc 183  Q
    |||| ||||||| |||| | ||| ||||||||||||| | ||||||||||| | ||||||||| | || ||||||||| ||||||  | ||||||||||     
T  13290391 aaacactctaggtattcggactcaaaattccataggaaccgacctcagttcgatattcgtataagtgagtctatcaagagtactcttgcagctatgtact 13290292  T
Q  184 ccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    |||||| ||||| |||||  | ||||||||||||| ||||||||    
T  13290291 ccactccacataaagtatcgacctcattaagagttcctattatc 13290248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 42727897 - 42727758
Alignment:
Q  89 gctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    ||||||| |||||||||||||||||||||| || | | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  42727897 gctctagaaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 42727798  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |   |||||| ||||||||||||||||||||||||    
T  42727797 tccataagaagtatagatctcattaagagtttctattatc 42727758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 15446001 - 15445867
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccc 184  Q
    ||||||||||| |||||||||| ||||    ||||| | ||||||||||||||||||||||  | || ||||||||| | | ||  |||||||||||| |    
T  15446001 aacgctctaggtattctgcctcaaaatcatgtaggaaccgacctcagttccacattcgtatttgggagtctatcaagagaaatcttgtagctatgtactc 15445902  T
Q  185 cactcaacatagagtatatatctcattaagagttt 219  Q
    ||||| ||||||| |||| ||| ||||||||||||    
T  15445901 cactccacatagattatagatcacattaagagttt 15445867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 22845528 - 22845595
Alignment:
Q  102 tgcctcgaaattccataggactgacctcagttccacattcgtataggcgaatctatcaagggtactcg 169  Q
    |||||||||||| | |||||| | ||||||||||||| ||||||||| || |||||||||||||||||    
T  22845528 tgcctcgaaatttcgtaggaccggcctcagttccacaatcgtataggtgagtctatcaagggtactcg 22845595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 27441983 - 27441858
Alignment:
Q  102 tgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagta 200  Q
    |||||| ||||||||||||| | |||||| |||| ||||||||||  | || ||||||||  ||| ||  ||||||| |||| | | || ||||| ||||    
T  27441983 tgcctcaaaattccataggaacggacctccgttcaacattcgtatttgtgagtctatcaaaagtaatcttgtagctaagtactcaa-tccacataaagta 27441885  T
Q  201 tatatctcattaagagtttctattatc 227  Q
    ||||||||||||||| |||||||||||    
T  27441884 tatatctcattaagaatttctattatc 27441858  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 3175511 - 3175413
Alignment:
Q  128 tcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagag--tatatatctcattaagagtttctatta 225  Q
    ||||||||||||||||| | |||| |||||||||  |||||  ||| |||||||   ||||| ||||||||  ||||||||||||||||| | |||||||    
T  3175511 tcagttccacattcgtagatgcgagtctatcaagattactcatgtaactatgta---cactccacatagagtatatatatctcattaagaatgtctatta 3175415  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 27557496 - 27557556
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggactgacctcagttccacattcgtata 146  Q
    ||||||| || |||||||||||||||||||| ||||  | |||||||||||||||| ||||    
T  27557496 aacgctcgagaaattctgcctcgaaattccaaaggatcggcctcagttccacattcttata 27557556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 28272583 - 28272615
Alignment:
Q  52 gcaattcgaaggtgtcggtgtacaatcattcca 84  Q
    |||||||||||||||||||||||||||||||||    
T  28272583 gcaattcgaaggtgtcggtgtacaatcattcca 28272615  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 32080547 - 32080589
Alignment:
Q  185 cactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||| ||||| |||||| ||||||||||||||||||||||||    
T  32080547 cactccacatatagtatagatctcattaagagtttctattatc 32080589  T

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Target: scaffold0061 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 48591 - 48452
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtacccc 185  Q
    |||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| || ||||||||||||||||  ||| ||| |||||||    
T  48591 aacgctctaggaattctgcctctaaattccataggaccggcctcagttccacattcgtataggtgagtctatcaagggtactcctgtaactaggtacccc 48492  T
Q  186 actcaacatagagtatatatctcattaagagtttctatta 225  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  48491 actcaacatagagtatagatctcattaagagtttctatta 48452  T

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Target: scaffold0017 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 150042 - 150181
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtacccc 185  Q
    |||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| || ||||||||||||||||  ||| ||| |||||||    
T  150042 aacgctctaggaattctgcctctaaattccataggaccggcctcagttccacattcgtataggtgagtctatcaagggtactcctgtaactaggtacccc 150141  T
Q  186 actcaacatagagtatatatctcattaagagtttctatta 225  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  150142 actcaacatagagtatagatctcattaagagtttctatta 150181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 93 - 225
Target Start/End: Complemental strand, 51539 - 51407
Alignment:
Q  93 taggaattctgcctcgaaattccataggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaac 192  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||  ||| ||| ||||||||||||||    
T  51539 taggaattctgcctctaaattccataggactggcctcagttccacattcgtataggtgagtctatcaagggtactcctgtaactaggtaccccactcaac 51440  T
Q  193 atagagtatatatctcattaagagtttctatta 225  Q
    |||||||||| |||||||||||||||| |||||    
T  51439 atagagtatagatctcattaagagtttatatta 51407  T

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Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 24491130 - 24491266
Alignment:
Q  89 gctctaggaattctgcctcgaaattccataggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccact 188  Q
    |||||||||||||||||||||||||||||||||| |||||  ||||||||||| |||||| || ||||||||||||||||  |||||| |||||||||||    
T  24491130 gctctaggaattctgcctcgaaattccataggaccgacctaggttccacattcatataggtgagtctatcaagggtactcttgtagctttgtaccccact 24491229  T
Q  189 caacatagagtatatatctcattaagagtttctatta 225  Q
    |||||||||||||| |||| |||||||||||||||||    
T  24491230 caacatagagtatagatctaattaagagtttctatta 24491266  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 7899588 - 7899449
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtacccc 185  Q
    |||||||||||||||||||||| |||||||||||||| | ||||||||||| ||||||||||| || ||||||||||||||||  ||| ||| |||||||    
T  7899588 aacgctctaggaattctgcctctaaattccataggaccgccctcagttccaaattcgtataggtgagtctatcaagggtactcctgtaactaggtacccc 7899489  T
Q  186 actcaacatagagtatatatctcattaagagtttctatta 225  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  7899488 actcaacatagagtatagatttcattaagagtttctatta 7899449  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 227
Target Start/End: Complemental strand, 37263271 - 37263130
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggact-gacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccc 184  Q
    |||| |||||| |||||||| |||| | |||||||| | | ||| ||||||||||||||||||| || ||||||||| ||||||  ||||||| |||| |    
T  37263271 aacgttctaggtattctgccccgaa-taccataggaatcggcctaagttccacattcgtataggtgagtctatcaagagtactcctgtagctaggtactc 37263173  T
Q  185 cactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||| |||||||||||| ||||||||||||||||||||||||    
T  37263172 cactccacatagagtatagatctcattaagagtttctattatc 37263130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 33467720 - 33467628
Alignment:
Q  135 cacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    |||||||||||||| || ||||||||| ||||||  |||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||    
T  33467720 cacattcgtataggtgagtctatcaagagtactcctgtagctatgtgctccactcaacatagagtatagatctcattaagagtttctattatc 33467628  T

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Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 227
Target Start/End: Original strand, 13060898 - 13060993
Alignment:
Q  132 ttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||||||| ||||||| || | ||||||| ||||||  |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  13060898 ttccacatttgtataggtgagtttatcaagagtactcctgtagctatgtactccactcaacatagagtatagatctcattaagagtttctattatc 13060993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 8984734 - 8984595
Alignment:
Q  89 gctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    |||||||||||||||||||||||||||||| || | | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  8984734 gctctaggaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 8984635  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |  ||||||| ||||||||||||||||||||||||    
T  8984634 tccataaggagtatagatctcattaagagtttctattatc 8984595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 13696156 - 13696295
Alignment:
Q  89 gctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    |||||||||||||||||||||||||||||| || | | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  13696156 gctctaggaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 13696255  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |  ||||||| ||||||||||||||||||||||||    
T  13696256 tccataaggagtatagatctcattaagagtttctattatc 13696295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 21304282 - 21304143
Alignment:
Q  89 gctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    |||||||||||||||||||||||||||||| || | | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  21304282 gctctaggaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 21304183  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |  ||||||| ||||||||||||||||||||||||    
T  21304182 tccataaggagtatagatctcattaagagtttctattatc 21304143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 36354959 - 36355098
Alignment:
Q  89 gctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    |||||||||||||||||||||||||||||| || | | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  36354959 gctctaggaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 36355058  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |  ||||||| ||||||||||||||||||||||||    
T  36355059 tccataaggagtataaatctcattaagagtttctattatc 36355098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 39999887 - 40000026
Alignment:
Q  89 gctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    |||||||||||||||||||||||||||||| || | | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  39999887 gctctaggaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 39999986  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |  ||||||| ||||||||||||||||||||||||    
T  39999987 tccataaggagtatagatctcattaagagtttctattatc 40000026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 19103407 - 19103504
Alignment:
Q  130 agttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||||||||||||||||| || ||||||||| ||||||  |||||||||||  ||||||  |||||| |||| ||||||||||||||||||||||||    
T  19103407 agttccacattcgtataggtgagtctatcaagagtactcctgtagctatgtattccactccgcatagaatatagatctcattaagagtttctattatc 19103504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 8029000 - 8028897
Alignment:
Q  124 gacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctat 223  Q
    ||||||||||| ||||||||||||| || ||||||||| |||| |  |||||||||||| ||||||||||||||| |||  |||||||||||| || |||    
T  8029000 gacctcagttctacattcgtataggtgagtctatcaagagtacccatgtagctatgtactccactcaacatagaggataggtctcattaagagattatat 8028901  T
Q  224 tatc 227  Q
    ||||    
T  8028900 tatc 8028897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 13701276 - 13701415
Alignment:
Q  89 gctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    |||||||||||||||||||||||||||||| || | | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  13701276 gctctaggaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 13701375  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |  ||||||| ||||||||||||||| ||||||||    
T  13701376 tccataaggagtatagatctcattaagagttactattatc 13701415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 54992240 - 54992379
Alignment:
Q  89 gctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    |||||||||||||||||||  ||||||||| || | ||||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  54992240 gctctaggaattctgcctcagaattccataagaaccgacctcagttctacatgcgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 54992339  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |  ||||||| ||||||||||||||||||||||||    
T  54992340 tccataaggagtatagatctcattaagagtttctattatc 54992379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 85 - 205
Target Start/End: Original strand, 19907674 - 19907794
Alignment:
Q  85 aaacgctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtacc 183  Q
    |||||||||||| |||||||| |||| | |||||||| | ||||||| ||||||||| ||||||| || |  |||||| ||||||  ||||||||||||     
T  19907674 aaacgctctaggtattctgccccgaa-tcccataggaaccgacctcaattccacatttgtataggtgagttcatcaagagtactcatgtagctatgtact 19907772  T
Q  184 ccactcaacatagagtatatat 205  Q
    ||||||||||||||||||||||    
T  19907773 ccactcaacatagagtatatat 19907794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 227
Target Start/End: Complemental strand, 17681806 - 17681663
Alignment:
Q  85 aaacgctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtacc 183  Q
    ||||| ||||||||||||||||| |||||  || ||| | || |||||||| |||||||||| || || |||||||||  |||||  ||||| ||||||     
T  17681806 aaacgatctaggaattctgcctcaaaatttgatgggagccgagctcagttcaacattcgtattggtgagtctatcaagattactcatgtagccatgtact 17681707  T
Q  184 ccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    |||||||||||| |||||| |||||||||| | ||| |||||||    
T  17681706 ccactcaacataaagtatagatctcattaacaatttatattatc 17681663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 54344021 - 54344160
Alignment:
Q  89 gctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    ||||||| |||||||||||||||||||||| || | | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  54344021 gctctagaaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 54344120  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |   |||||| ||||||||||||||||||||||||    
T  54344121 tccataagaagtatagatctcattaagagtttctattatc 54344160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 13711769 - 13711908
Alignment:
Q  89 gctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    |||||||||||||||||||| ||||||||| || | | |||||||||  ||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  13711769 gctctaggaattctgcctcggaattccataagaaccggcctcagttctgcatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 13711868  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |  ||||||| ||||||||||||||| ||||||||    
T  13711869 tccataaggagtatagatctcattaagagttactattatc 13711908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 219
Target Start/End: Original strand, 12875724 - 12875858
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggact-gacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccc 184  Q
    ||||||||||||||| |||||| ||||  ||||||| | | ||| ||||||| |    |||||| || ||||||||| |||| |  |||||||||||| |    
T  12875724 aacgctctaggaattttgcctcaaaatctcataggaatcggccttagttccataactatataggtgagtctatcaagagtacgcatgtagctatgtactc 12875823  T
Q  185 cactcaacatagagtatatatctcattaagagttt 219  Q
    ||||| | |||||||||| ||||||||||||||||    
T  12875824 cactccatatagagtatagatctcattaagagttt 12875858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 29349055 - 29348981
Alignment:
Q  87 acgctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaag 161  Q
    |||||||||| |||||||| |||| |||||||||| | ||||||| ||||||||||||||||| || |||||||||    
T  29349055 acgctctaggtattctgccccgaa-ttccataggaaccgacctcaattccacattcgtataggtgagtctatcaag 29348981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 13687502 - 13687641
Alignment:
Q  89 gctctaggaattctgcctcgaaattccatagga--ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtacccca 186  Q
    ||||||| |||||||||||| ||||||||| ||  ||| |||||||||  ||| |||||||| || |||||||    |||||  ||||||||||||  ||    
T  13687502 gctctagtaattctgcctcgtaattccataagaatctg-cctcagttcttcatacgtataggtgagtctatcagaattactcctgtagctatgtacttca 13687600  T
Q  187 ctcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||| | |  ||||||| ||||||||||||||| ||||||||    
T  13687601 ctccataaggagtatagatctcattaagagttactattatc 13687641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 17681963 - 17681895
Alignment:
Q  93 taggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaa 160  Q
    |||||||| |||||||||||||||| ||| |  ||||||||||||||||||||| || || ||||||||    
T  17681963 taggaattatgcctcgaaattccattggaacctacctcagttccacattcgtattggtgagtctatcaa 17681895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 213004 - 212865
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtacccc 185  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || |||||||||| |||||  ||| ||| |||||||    
T  213004 aacgctctaggaattctgcctcgaaattccataggaccggcctcagttccacattcgtataggtgagtctatcaaggatactcctgtaactaggtacccc 212905  T
Q  186 actcaacatagagtatatatctcattaagagtttctatta 225  Q
    |||||| |||||||||| ||||||||| ||||||||||||    
T  212904 actcaatatagagtatagatctcattacgagtttctatta 212865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 21959844 - 21959983
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtacccc 185  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || |||||||||| |||||  ||| ||| |||||||    
T  21959844 aacgctctaggaattctgcctcgaaattccataggaccggcctcagttccacattcgtataggtgagtctatcaaggatactcctgtaactaggtacccc 21959943  T
Q  186 actcaacatagagtatatatctcattaagagtttctatta 225  Q
    |||||| |||||||||| ||||||||| ||||||||||||    
T  21959944 actcaatatagagtatagatctcattacgagtttctatta 21959983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 19431075 - 19431204
Alignment:
Q  89 gctctaggaattctgcctcgaaattccataggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccact 188  Q
    |||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| || |||||||| |||||||  |||||||||||||||| |    
T  19431075 gctctaggaattctgcctcgaaattccataggtctggcctaagttccacattcgtataggtgagtctatcaaaggtactcctgtagctatgtaccccagt 19431174  T
Q  189 caacatagagtatatatctcattaagagtt 218  Q
    |||||||||||||| |||||||||||||||    
T  19431175 caacatagagtataaatctcattaagagtt 19431204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 19567224 - 19567353
Alignment:
Q  89 gctctaggaattctgcctcgaaattccataggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccact 188  Q
    |||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| || |||||||| |||||||  |||||||||||||||| |    
T  19567224 gctctaggaattctgcctcgaaattccataggtctggcctaagttccacattcgtataggtgagtctatcaaaggtactcctgtagctatgtaccccagt 19567323  T
Q  189 caacatagagtatatatctcattaagagtt 218  Q
    |||||||||||||| |||||||||||||||    
T  19567324 caacatagagtataaatctcattaagagtt 19567353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 93 - 225
Target Start/End: Complemental strand, 8330005 - 8329873
Alignment:
Q  93 taggaattctgcctcgaaattccataggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaac 192  Q
    ||||||||||||||| ||||| |||||||| | |||||||||||||||| |||||| || | ||||||||||||||  ||| ||| ||||||||||||||    
T  8330005 taggaattctgcctctaaatttcataggaccggcctcagttccacattcatataggtgagtttatcaagggtactcttgtaactaggtaccccactcaac 8329906  T
Q  193 atagagtatatatctcattaagagtttctatta 225  Q
    |||||||||| | ||||||||||||||||||||    
T  8329905 atagagtatagacctcattaagagtttctatta 8329873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 227
Target Start/End: Complemental strand, 4241713 - 4241572
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggact-gacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccc 184  Q
    ||||||||||| ||| |||| |||| | |||||||| | | ||| ||||||||||||||||||| || ||||||||| ||||||  ||||||| |||| |    
T  4241713 aacgctctaggtattttgccccgaa-taccataggaatcggcctaagttccacattcgtataggtgagtctatcaagagtactcctgtagctaggtactc 4241615  T
Q  185 cactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||| |||||||||||| ||||||||||||||||||||||||    
T  4241614 cactccacatagagtatagatctcattaagagtttctattatc 4241572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 17021697 - 17021794
Alignment:
Q  130 agttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||||||||||||||||| |  |||||||||  |||||  ||||||| |||| |||||| |||||||||||| ||||||||||||||||||||||||    
T  17021697 agttccacattcgtataggtggttctatcaagattactcatgtagctaggtactccactccacatagagtatagatctcattaagagtttctattatc 17021794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 17552134 - 17552231
Alignment:
Q  130 agttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||||||||||||||||| |  |||||||||  |||||  ||||||| |||| |||||| |||||||||||| ||||||||||||||||||||||||    
T  17552134 agttccacattcgtataggtggttctatcaagattactcatgtagctaggtactccactccacatagagtatagatctcattaagagtttctattatc 17552231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 21648531 - 21648392
Alignment:
Q  89 gctctaggaattctgcctcgaaattccat-aggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    ||||||||||||||||||||||||||||| || || | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  21648531 gctctaggaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 21648432  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |   |||||| ||||||||||||||||||||||||    
T  21648431 tccataagaagtatagatctcattaagagtttctattatc 21648392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 227
Target Start/End: Original strand, 28860201 - 28860304
Alignment:
Q  124 gacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctat 223  Q
    |||||| ||||||||||||||||| ||| | ||||||| ||||||  |||| ||||||| ||| |||||||| | |||| ||||||||||||||||||||    
T  28860201 gacctctgttccacattcgtatagacgagtttatcaagagtactcatgtagttatgtactccattcaacatacaatatagatctcattaagagtttctat 28860300  T
Q  224 tatc 227  Q
    ||||    
T  28860301 tatc 28860304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 32011344 - 32011483
Alignment:
Q  89 gctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    |||||||||||||||||||| ||||||||| || | | ||||||||| |||| |||||| | || |||||||   ||||||  |||||| |||||  |||    
T  32011344 gctctaggaattctgcctcggaattccataagaaccggcctcagttctacatgcgtataagtgagtctatcagaagtactcctgtagctttgtacttcac 32011443  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |  ||||||| ||||||||||||||||||||||||    
T  32011444 tccataaggagtatagatctcattaagagtttctattatc 32011483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 4541077 - 4540984
Alignment:
Q  132 ttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctatta 225  Q
    ||||||||||  | ||| || ||||||||| ||||||  ||||||| |||| |||||| |||||||||||| |||||||||||||||| |||||    
T  4541077 ttccacattcacaaaggtgagtctatcaagagtactcttgtagctaggtactccactccacatagagtatagatctcattaagagtttatatta 4540984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 7005115 - 7005155
Alignment:
Q  121 actgacctcagttccacattcgtataggcgaatctatcaag 161  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  7005115 actgaccttagttccacattcgtataggtgaatctatcaag 7005155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 17289358 - 17289229
Alignment:
Q  89 gctctaggaattctgcctcgaaattccataggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccact 188  Q
    |||||||||||||||||||||||||||||||||| |||||  |||||||| ||| ||||| || ||||||||||||| ||  ||||||||||||||||||    
T  17289358 gctctaggaattctgcctcgaaattccataggaccgacctatgttccacaatcggataggtgagtctatcaagggtattcatgtagctatgtaccccact 17289259  T
Q  189 caacatagagtatatatctcattaagagtt 218  Q
    ||||||||||||||||||||||||||||||    
T  17289258 caacatagagtatatatctcattaagagtt 17289229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 86 - 218
Target Start/End: Original strand, 10486134 - 10486266
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtacccc 185  Q
    |||||||||||||||||||||||||||| |||||||| | |||  |||| ||||||||||||| || ||||||||||||||||  |||||||||||||||    
T  10486134 aacgctctaggaattctgcctcgaaatttcataggaccggcctaggttctacattcgtataggtgagtctatcaagggtactcctgtagctatgtacccc 10486233  T
Q  186 actcaacatagagtatatatctcattaagagtt 218  Q
    ||||||||||||||||| |||||||||||||||    
T  10486234 actcaacatagagtatagatctcattaagagtt 10486266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 19479178 - 19479314
Alignment:
Q  89 gctctaggaattctgcctcgaaattccataggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccact 188  Q
    |||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||| || |||||||| |||| ||  |||||||||||||| |||    
T  19479178 gctctaggaattctgcctcgaaattccataggactggcctaggttccacattcgtataggtgagtctatcaaaggtattcctgtagctatgtaccctact 19479277  T
Q  189 caacatagagtatatatctcattaagagtttctatta 225  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  19479278 caacatagagtatagatctcattaagagttgctatta 19479314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 86 - 227
Target Start/End: Complemental strand, 16834869 - 16834728
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggact-gacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccc 184  Q
    |||| |||||| |||||||| |||| | |||||||| | | ||| |||| |||||||| ||||| || ||||||||||||||||  ||||||| |||| |    
T  16834869 aacgttctaggtattctgccccgaa-taccataggaatcggcctaagtttcacattcgcataggtgagtctatcaagggtactcctgtagctaggtactc 16834771  T
Q  185 cactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||| |||||||||||| ||||||||||||||||||||||||    
T  16834770 cactccacatagagtatagatctcattaagagtttctattatc 16834728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 19993076 - 19992975
Alignment:
Q  126 cctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctatta 225  Q
    ||||| || |||||||||||||| || ||| ||||| ||| ||  |||||||||||| |||||||||||| |||||| ||||||||||||||||||||||    
T  19993076 cctcaattgcacattcgtataggtgagtctttcaagagtaatcatgtagctatgtactccactcaacatatagtatagatctcattaagagtttctatta 19992977  T
Q  226 tc 227  Q
    ||    
T  19992976 tc 19992975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 22694130 - 22694013
Alignment:
Q  110 aattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtact-cgcgtagctatgtaccccactcaacatagagtatatatct 207  Q
    |||||||||||| | | ||| ||||| |||||||||||||||| | |  |||| ||||| || ||||||||||||||||||| |||||||||||| ||||    
T  22694130 aattccataggaaccggcctgagttcgacattcgtataggcgagttt--caagagtacttcgtgtagctatgtaccccactccacatagagtatagatct 22694033  T
Q  208 cattaagagtttctattatc 227  Q
    ||||||||||||||||||||    
T  22694032 cattaagagtttctattatc 22694013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 22702695 - 22702556
Alignment:
Q  89 gctctaggaattctgcctcgaaattccat-aggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    ||||||||||||||||||||||||||||| || || | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  22702695 gctctaggaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 22702596  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |   |||||| ||||||||||||||||||||||||    
T  22702595 tccataagaagtatagatctcattaagagtttctattatc 22702556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 5496362 - 5496418
Alignment:
Q  171 gtagctatgtaccccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||    
T  5496362 gtagctaggtactccactccacatagagtatatatctcattaagagtttctattatc 5496418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 29514705 - 29514606
Alignment:
Q  128 tcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  ||||| | |  ||||||| ||||||||||||||||||||||||    
T  29514705 tcagttctacatgcgtataggtgagtctatcataagtactcctgtagctatgtacttcactccataaggagtatagatctcattaagagtttctattatc 29514606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 227
Target Start/End: Complemental strand, 12797484 - 12797337
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggact-gacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagct------at 178  Q
    |||||||||||||||||  ||| |||| |||||||| | | ||||||||||||||||||||||| || |||| |||| ||||||   ||| |      ||    
T  12797484 aacgctctaggaattctagctc-aaatcccataggaatcggcctcagttccacattcgtataggtgagtctaacaagtgtactcctatagttatgtacat 12797386  T
Q  179 gtaccccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    |||| ||| || |||||||||||| |||| ||||||| |||||||||||    
T  12797385 gtactccattccacatagagtatacatctgattaagaatttctattatc 12797337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 86 - 226
Target Start/End: Complemental strand, 7018292 - 7018152
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtacccc 185  Q
    |||||||||| ||||||||||| |||||| |||| || ||||||||||||||||||||||||  |||||||||||| ||||||  ||||||||||||||     
T  7018292 aacgctctagaaattctgcctcaaaattctatagaaccgacctcagttccacattcgtatagatgaatctatcaagagtactcctgtagctatgtaccct 7018193  T
Q  186 actcaacatagagtatatatctcattaagagtttctattat 226  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  7018192 actcaacatagagtatagatctcattaagagttgctattat 7018152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 86 - 226
Target Start/End: Complemental strand, 7033650 - 7033510
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtacccc 185  Q
    |||||||||| ||||||||||| |||||| |||| || ||||||||||||||||||||||||  |||||||||||| ||||||  ||||||||||||||     
T  7033650 aacgctctagaaattctgcctcaaaattctatagaaccgacctcagttccacattcgtatagatgaatctatcaagagtactcctgtagctatgtaccct 7033551  T
Q  186 actcaacatagagtatatatctcattaagagtttctattat 226  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  7033550 actcaacatagagtatagatctcattaagagttgctattat 7033510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 10391762 - 10391661
Alignment:
Q  126 cctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctatta 225  Q
    ||||||||||||||| ||||||| || ||||||||| ||||||  |||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  10391762 cctcagttccacattggtataggtgagtctatcaagagtactcctgtagctatgtactccactcaacatagagtatatatctcattaaaagtttctatta 10391663  T
Q  226 tc 227  Q
    ||    
T  10391662 tc 10391661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 86 - 227
Target Start/End: Original strand, 12802668 - 12802809
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccc 184  Q
    ||||||||||| |||||||| |||| | |||||||| | | ||| | ||||||||||||||||| || ||||||||| ||||||  |||||||||||| |    
T  12802668 aacgctctaggtattctgccccgaa-taccataggaaccggccttaattccacattcgtataggtgagtctatcaagagtactcatgtagctatgtactc 12802766  T
Q  185 cactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    |||||||||||||||||| ||||||| ||||||||||||||||    
T  12802767 cactcaacatagagtatagatctcatgaagagtttctattatc 12802809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 2596202 - 2596296
Alignment:
Q  132 ttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctattat 226  Q
    ||||||||||||||||| || |||| |||| ||||||  ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  2596202 ttccacattcgtataggtgagtctaacaagagtactcctgtacctatgtactccactcaacatagagtatagatctcattaagagtttctattat 2596296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 86 - 227
Target Start/End: Original strand, 15975255 - 15975397
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccc 184  Q
    ||||||||||| ||||| |||| ||||  |||| || | |||||||  |||| |||||||||||||| ||||||||| ||||||  ||||||||||||      
T  15975255 aacgctctaggtattctacctcaaaatctcatatgaaccgacctcaactccatattcgtataggcgagtctatcaagagtactcatgtagctatgtactt 15975354  T
Q  185 cactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||| | ||||||||||||||| |||||||||||||||||||    
T  15975355 cactccaaatagagtatatatcttattaagagtttctattatc 15975397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 47994618 - 47994757
Alignment:
Q  89 gctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    |||||||||||||||||||||||||||||| || | | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  47994618 gctctaggaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 47994717  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |  ||||||| ||||||||||||||||||||||||    
T  47994718 tccataaggagtatagatctcattaagagtttctattatc 47994757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 33238821 - 33238960
Alignment:
Q  89 gctctaggaattctgcctcgaaattccat-aggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    ||||||||||||||||||||||||||||| || || | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  33238821 gctctaggaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 33238920  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |   |||||| ||||||||||||||||||||||||    
T  33238921 tccataagaagtatagatctcattaagagtttctattatc 33238960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 17496499 - 17496638
Alignment:
Q  89 gctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    ||||||| |||||||||||  ||||||||| || | | ||||||||| |||| |||||| | || |||||||   ||||||  ||||||||||||  |||    
T  17496499 gctctagaaattctgcctcagaattccataagaaccggcctcagttctacatacgtatatgtgagtctatcagaagtactcctgtagctatgtacttcac 17496598  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |  ||||||| ||||||||||||||||||||||||    
T  17496599 tccataaggagtatagatctcattaagagtttctattatc 17496638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 17556715 - 17556576
Alignment:
Q  89 gctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    ||||||| |||||||||||  ||||||||| || | | ||||||||| |||| |||||| | || |||||||   ||||||  ||||||||||||  |||    
T  17556715 gctctagaaattctgcctcagaattccataagaaccggcctcagttctacatacgtatatgtgagtctatcagaagtactcctgtagctatgtacttcac 17556616  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |  ||||||| ||||||||||||||||||||||||    
T  17556615 tccataaggagtatagatctcattaagagtttctattatc 17556576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 15233978 - 15234075
Alignment:
Q  130 agttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||||||||||||||||  || ||||||||| ||||||  |||| | ||||| |||||  | ||  | |||| ||||||||||||||| ||||||||    
T  15233978 agttccacattcgtatagatgagtctatcaagagtactcatgtagatttgtactccacttcatatgcattatagatctcattaagagttcctattatc 15234075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 20474237 - 20474205
Alignment:
Q  193 atagagtatatatctcattaagagtttctatta 225  Q
    |||||||||||||| ||||||||||||||||||    
T  20474237 atagagtatatatcgcattaagagtttctatta 20474205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 90 - 225
Target Start/End: Original strand, 59871 - 60006
Alignment:
Q  90 ctctaggaattctgcctcgaaattccataggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactc 189  Q
    |||||| |||| |||||| |||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| ||  ||| ||| |||||||||||    
T  59871 ctctagaaattttgcctctaaattccataggaccgacctcagttccacattcgtataggtgagtctatcaagggtaatcctgtaactaggtaccccactc 59970  T
Q  190 aacatagagtatatatctcattaagagtttctatta 225  Q
    ||||||||||||| ||||||||||||||||||||||    
T  59971 aacatagagtatagatctcattaagagtttctatta 60006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 90 - 225
Target Start/End: Original strand, 64073 - 64208
Alignment:
Q  90 ctctaggaattctgcctcgaaattccataggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactc 189  Q
    |||||| |||| |||||| |||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| ||  ||| ||| |||||||||||    
T  64073 ctctagaaattttgcctctaaattccataggaccgacctcagttccacattcgtataggtgagtctatcaagggtaatcctgtaactaggtaccccactc 64172  T
Q  190 aacatagagtatatatctcattaagagtttctatta 225  Q
    ||||||||||||| ||||||||||||||||||||||    
T  64173 aacatagagtatagatctcattaagagtttctatta 64208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 2668 - 2804
Alignment:
Q  89 gctctaggaattctgcctcgaaattccataggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccact 188  Q
    ||||||| |||||||||||||||||||||||||| | ||| ||||||||||| ||||||| || |||||||| |||||||  |||| |||||||||||||    
T  2668 gctctagaaattctgcctcgaaattccataggaccggcctaagttccacatttgtataggtgagtctatcaaaggtactcctgtagttatgtaccccact 2767  T
Q  189 caacatagagtatatatctcattaagagtttctatta 225  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  2768 caacatagtgtatagatctcattaagagtttctatta 2804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 33064 - 32926
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtacccc 185  Q
    ||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||| || ||||||||| ||||||  |||| |||| |  ||    
T  33064 aacgctctaggaattcttcctcgagattccataggaccgacctcagttccacattcgtataggagagtctatcaagagtactcctgtagttatgcaatcc 32965  T
Q  186 actcaacatagagtatatatctcattaagagtttctatt 224  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  32964 actcaacatagagtataaatctcattaagagttgctatt 32926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 227
Target Start/End: Original strand, 36425026 - 36425167
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggact-gacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccc 184  Q
    |||| |||||| |||||||| |||| | |||||||| | | ||| ||||||||||||||||||| || ||||||||| ||||||  ||||||| |||| |    
T  36425026 aacgttctaggtattctgccccgaa-taccataggaatcggcctaagttccacattcgtataggtgagtctatcaagagtactcctgtagctaggtactc 36425124  T
Q  185 cactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||| |||||||||||| ||||||||||||||||||||||||    
T  36425125 cactccacatagagtatagatctcattaagagtttctattatc 36425167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 227
Target Start/End: Original strand, 41998103 - 41998244
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggact-gacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccc 184  Q
    ||||||||||| ||| |||| |||| | |||||||| | | ||| ||||||||||||||||||| || ||||||||| ||||||  ||||||| |||| |    
T  41998103 aacgctctaggtattttgccccgaa-taccataggaatcggcctaagttccacattcgtataggtgagtctatcaagagtactcctgtagctaggtactc 41998201  T
Q  185 cactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||| |||||||||||| ||||||||||||||||||||||||    
T  41998202 cactccacatagagtatagatctcattaagagtttctattatc 41998244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 558201 - 558298
Alignment:
Q  130 agttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||||||||||||||||| || ||||||||| ||||||  ||||||| |||| |||||| |||||||||||| ||||||||||||||||||||||||    
T  558201 agttccacattcgtataggtgagtctatcaagagtactcctgtagctaggtactccactccacatagagtatagatctcattaagagtttctattatc 558298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 36940853 - 36940756
Alignment:
Q  130 agttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||||||||||||||||| || ||||||||| ||||||  ||||||| |||| |||||| |||||||||||| ||||||||||||||||||||||||    
T  36940853 agttccacattcgtataggtgagtctatcaagagtactcctgtagctaggtactccactccacatagagtatagatctcattaagagtttctattatc 36940756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 86 - 227
Target Start/End: Original strand, 39519773 - 39519914
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggact-gacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccc 184  Q
    |||| |||||| |||||||| |||| | |||||||| | | ||| ||||||||||||| ||||| || ||||||||| ||||||  ||||||| |||| |    
T  39519773 aacgttctaggtattctgccccgaa-taccataggaatcggcctaagttccacattcgcataggtgagtctatcaagagtactcctgtagctaggtactc 39519871  T
Q  185 cactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||| |||||||||| | ||||||||||||||||||||||||    
T  39519872 cactccacatagagtagagatctcattaagagtttctattatc 39519914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 26668710 - 26668806
Alignment:
Q  130 agttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||||||||||||||||| || | ||||||| ||||||  ||||||| |||| |||||| ||||||||||||  |||||||||||||||||||||||    
T  26668710 agttccacattcgtataggtgagtatatcaagagtactcctgtagctaggtactccactccacatagagtata-gtctcattaagagtttctattatc 26668806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 26940307 - 26940403
Alignment:
Q  130 agttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||||||||||||||||| || | ||||||| ||||||  ||||||| |||| |||||| ||||||||||||  |||||||||||||||||||||||    
T  26940307 agttccacattcgtataggtgagtatatcaagagtactcctgtagctaggtactccactccacatagagtata-gtctcattaagagtttctattatc 26940403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 17505721 - 17505860
Alignment:
Q  89 gctctaggaattctgcctcgaaattccat-aggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    ||||||||||||||||||||||||||||| || || | ||||||||| |||| |||||||| || ||||| |   ||||||  ||||||||||||  |||    
T  17505721 gctctaggaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctattagaagtactcctgtagctatgtacttcac 17505820  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |   |||||| ||||||||||||||||||||||||    
T  17505821 tccataagaagtatagatctcattaagagtttctattatc 17505860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 24775807 - 24775668
Alignment:
Q  89 gctctaggaattctgcctcgaaattccat-aggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    ||||||||||||||||||||||||||||| || || | ||||||||| |||| |||||||| || |||||||   |||| |  |||||||||||   |||    
T  24775807 gctctaggaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtacccctgtagctatgtagttcac 24775708  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |  ||||||| ||||||||||||||||||||||||    
T  24775707 tccataaggagtatagatctcattaagagtttctattatc 24775668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 42020630 - 42020769
Alignment:
Q  89 gctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    ||||||| |||||||||||||||||||||| || | | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  42020630 gctctagaaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 42020729  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |   |||||| ||||||||||||||||||||||||    
T  42020730 tccataagaagtatagatctcattaagagtttctattatc 42020769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 41854237 - 41854376
Alignment:
Q  89 gctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    |||||| |||||||||||| |||||||||| || | | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  41854237 gctctaagaattctgcctcaaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 41854336  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |   |||||| |||||||||||||||| |||||||    
T  41854337 tccataagaagtatagatctcattaagagtttatattatc 41854376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 41318971 - 41318897
Alignment:
Q  153 tctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||||||| ||||||  |||||||  |||  ||||| |||||||||||| ||||||||||||||||||||||||    
T  41318971 tctatcaagagtactcttgtagctagatactacactccacatagagtatagatctcattaagagtttctattatc 41318897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 42020339 - 42020410
Alignment:
Q  89 gctctaggaattctgcctcgaaattccataggact-gacctcagttccacattcgtataggcgaatctatca 159  Q
    |||||||||||||||||||||||||||||| || | | ||||||||| |||| |||||||| || |||||||    
T  42020339 gctctaggaattctgcctcgaaattccataagaatcggcctcagttctacatacgtataggtgagtctatca 42020410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 17550158 - 17550058
Alignment:
Q  127 ctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctattat 226  Q
    |||||||||||||||||||||  || ||||||||| ||||||  |||| | ||||| |||||  | ||  | |||| ||||||||||||||| |||||||    
T  17550158 ctcagttccacattcgtatagatgagtctatcaagagtactcatgtagatttgtactccacttcatatgcattatagatctcattaagagttcctattat 17550059  T
Q  227 c 227  Q
    |    
T  17550058 c 17550058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 25688265 - 25688165
Alignment:
Q  126 cctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctatta 225  Q
    |||||||||||||||| |||| | || ||||| ||| ||||||   ||||||||||| |||||  | ||||| |||| | ||||||||||||||| ||||    
T  25688265 cctcagttccacattcatataagtgagtctattaagagtactcatttagctatgtactccacttcatatagaatatagacctcattaagagtttccatta 25688166  T
Q  226 t 226  Q
    |    
T  25688165 t 25688165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 227
Target Start/End: Original strand, 3674027 - 3674168
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggact-gacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccc 184  Q
    ||||||||||| ||| |||| |||| | |||||||| | | ||| ||||||||||||||||||| || ||||||||| ||||||  ||||||| |||| |    
T  3674027 aacgctctaggtattttgccccgaa-taccataggaatcggcctaagttccacattcgtataggtgagtctatcaagagtactcctgtagctaggtactc 3674125  T
Q  185 cactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||| |||||||||||| ||||||||||||||||||||||||    
T  3674126 cactccacatagagtatagatctcattaagagtttctattatc 3674168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 18468644 - 18468741
Alignment:
Q  130 agttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||||||||||||||||| || ||||||||| ||||||  ||||||| |||| |||||| |||||||||||| ||||||||||||||||||||||||    
T  18468644 agttccacattcgtataggtgagtctatcaagagtactcctgtagctaggtactccactccacatagagtatagatctcattaagagtttctattatc 18468741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 86 - 227
Target Start/End: Original strand, 8884631 - 8884772
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggact-gacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccc 184  Q
    ||||||||||| ||| |||| |||| | |||||||| | | ||| ||||||||||||||||||| || ||||||||| ||||||  ||||||| |||| |    
T  8884631 aacgctctaggtattttgccccgaa-taccataggaatcggcctaagttccacattcgtataggtgagtctatcaagagtactcctgtagctaggtactc 8884729  T
Q  185 cactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||| || ||||||||| ||||||||||||||||||||||||    
T  8884730 cactccacgtagagtatagatctcattaagagtttctattatc 8884772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 86 - 227
Target Start/End: Complemental strand, 12970517 - 12970376
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccatag-gactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccc 184  Q
    ||||||||||| |||||||| |  ||| ||||||  |||| ||||||||||||||||||||||| || || |||||  ||||||  |||||||||||| |    
T  12970517 aacgctctaggtattctgcc-ctgaatcccatagaaactggcctcagttccacattcgtataggtgagtccatcaatagtactcatgtagctatgtactc 12970419  T
Q  185 cactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||||  |||||||||| ||||||||||||||||||||||||    
T  12970418 cactcattatagagtatagatctcattaagagtttctattatc 12970376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 86 - 227
Target Start/End: Complemental strand, 23664829 - 23664688
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggact-gacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccc 184  Q
    |||| |||||| |||||||| |||| | |||||||| | | ||| ||||||||||||| ||||| || ||||||||| ||||||  ||||||| |||| |    
T  23664829 aacgttctaggtattctgccccgaa-taccataggaatcggcctaagttccacattcgcataggtgagtctatcaagagtactcctgtagctaggtactc 23664731  T
Q  185 cactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||| |||||||||||| ||||||||||||||||||||||||    
T  23664730 cactccacatagagtatagatctcattaagagtttctattatc 23664688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 20095063 - 20094924
Alignment:
Q  89 gctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    |||||||||||||||||||||||||||||| || | | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  20095063 gctctaggaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 20094964  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |  ||||||| ||||||||||||||||||||||||    
T  20094963 tccataaggagtatagatctcattaagagtttctattatc 20094924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 27604178 - 27604064
Alignment:
Q  109 aaattccataggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctc 208  Q
    |||||||||||||    |||||||||  |||| ||||||| || |||| ||||| |||||  ||||||||||||||||||||| |||||||| |||||||    
T  27604178 aaattccataggaaccgcctcagttctgcatttgtataggtgagtctaccaaggatactcttgtagctatgtaccccactcaagatagagtacatatctc 27604079  T
Q  209 attaagagtttctat 223  Q
    |||||||||||||||    
T  27604078 attaagagtttctat 27604064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 3481396 - 3481257
Alignment:
Q  89 gctctaggaattctgcctcgaaattccat-aggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    ||||||||||||||||||||||||||||| || || | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  3481396 gctctaggaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 3481297  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |   |||||| ||||||||||||||||||||||||    
T  3481296 tccataagaagtatagatctcattaagagtttctattatc 3481257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 15767468 - 15767329
Alignment:
Q  89 gctctaggaattctgcctcgaaattccat-aggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    ||||||||||||||||||||||||||||| || || | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  15767468 gctctaggaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 15767369  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |   |||||| ||||||||||||||||||||||||    
T  15767368 tccataagaagtatagatctcattaagagtttctattatc 15767329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 16452983 - 16452890
Alignment:
Q  132 ttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctatta 225  Q
    ||||||||||  | ||| || ||||||||| ||||||  ||||||| |||| |||||| |||||||||||| |||||||||||||||| |||||    
T  16452983 ttccacattcacaaaggtgagtctatcaagagtactcttgtagctaggtactccactccacatagagtatagatctcattaagagtttatatta 16452890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 17358964 - 17359103
Alignment:
Q  89 gctctaggaattctgcctcgaaattccat-aggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    ||||||||||||||||||||||||||||| || ||   ||||||||| |||| |||||||| || |||||||   | || |  |||||||||||   |||    
T  17358964 gctctaggaattctgcctcgaaattccataagaaccagcctcagttctacatacgtataggtgagtctatcagaagaacacctgtagctatgtaattcac 17359063  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |  ||||||| ||||||||||||||||||||||||    
T  17359064 tccataaggagtatagatctcattaagagtttctattatc 17359103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 12564959 - 12564907
Alignment:
Q  109 aaattccataggactgacctcagttccacattcgtataggcgaatctatcaag 161  Q
    |||| ||||||||  |||||| ||||||||||| |||||| ||||||||||||    
T  12564959 aaatcccataggaacgacctcggttccacattcttataggtgaatctatcaag 12564907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 13259358 - 13259306
Alignment:
Q  109 aaattccataggactgacctcagttccacattcgtataggcgaatctatcaag 161  Q
    |||| ||||||||  |||||| ||||||||||| |||||| ||||||||||||    
T  13259358 aaatcccataggaacgacctcggttccacattcttataggtgaatctatcaag 13259306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 227
Target Start/End: Original strand, 10136713 - 10136854
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggact-gacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccc 184  Q
    |||| |||||| |||||||| |||| | |||||||| | | ||| ||||||||||||||||||| || ||||||||| ||||||  ||||||| |||| |    
T  10136713 aacgttctaggtattctgccccgaa-taccataggaatcggcctaagttccacattcgtataggtgagtctatcaagagtactcctgtagctaggtactc 10136811  T
Q  185 cactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||| |||||||||||| ||||||||||||||||||||||||    
T  10136812 cactccacatagagtatagatctcattaagagtttctattatc 10136854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 86 - 227
Target Start/End: Original strand, 25845144 - 25845285
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccataggact-gacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccc 184  Q
    |||| |||||| |||||||| |||| | |||||||| | | ||| ||||||||||||| ||||| || ||||||||| ||||||  ||||||| |||| |    
T  25845144 aacgttctaggtattctgccccgaa-taccataggaatcggcctaagttccacattcgcataggtgagtctatcaagagtactcctgtagctaggtactc 25845242  T
Q  185 cactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||| |||||||||||| ||||||||||||||||||||||||    
T  25845243 cactccacatagagtatagatctcattaagagtttctattatc 25845285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 5725764 - 5725903
Alignment:
Q  89 gctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    |||||||||||||||||||||||||||||| || | | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  5725764 gctctaggaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcataagtactcttgtagctatgtacttcac 5725863  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |  ||||||| ||||||||||||||||||||||||    
T  5725864 tccataaggagtatagatctcattaagagtttctattatc 5725903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 27712089 - 27712228
Alignment:
Q  89 gctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    |||||||||||||||||||||||||||||| || | | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  27712089 gctctaggaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 27712188  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |  ||||||| ||||||||||||||||||||||||    
T  27712189 tccataaggagtatagatctcattaagagtttctattatc 27712228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 37408865 - 37408726
Alignment:
Q  89 gctctaggaattctgcctcgaaattccat-aggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    ||||||||||||||||||||||||||||| || || | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  37408865 gctctaggaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 37408766  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |   |||||| ||||||||||||||||||||||||    
T  37408765 tccataagaagtatagatctcattaagagtttctattatc 37408726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 16037025 - 16037139
Alignment:
Q  110 aattccataggact-gacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctc 208  Q
    |||||||||||| | | ||||||||||||||||||||||| || |||||||||  ||||   ||||  |||||| |||||| |||||||||||||| |||    
T  16037025 aattccataggattcggcctcagttccacattcgtataggtgagtctatcaagaatactaatgtagtcatgtactccactccacatagagtatatacctc 16037124  T
Q  209 attaagagtttctat 223  Q
    |||||||||||||||    
T  16037125 attaagagtttctat 16037139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 224
Target Start/End: Complemental strand, 27307107 - 27306973
Alignment:
Q  91 tctaggaattctgcctcgaaattccataggac-tgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactc 189  Q
    |||||| |||||||||| |||| |||||| |  || |||  ||||||||||||||||||||| ||||| ||| ||||||  |||||||| ||| ||||||    
T  27307107 tctaggtattctgcctcaaaatcccatagaaaatggcctatgttccacattcgtataggcgagtctataaagagtactcatgtagctatctactccactc 27307008  T
Q  190 aacatagagtatatatctcattaagagtttctatt 224  Q
       ||| | |||| |||||||||||||||||||||    
T  27307007 cttatatactataaatctcattaagagtttctatt 27306973  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 11807625 - 11807726
Alignment:
Q  126 cctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctatta 225  Q
    ||||||||| | |||||||| ||  | ||||||||| ||||||  |||||||||||  ||||| |||||| |||||| |||||||||| |||||||||||    
T  11807625 cctcagttcgatattcgtatcggtcagtctatcaagagtactcctgtagctatgtaatccacttaacataaagtatagatctcattaaaagtttctatta 11807724  T
Q  226 tc 227  Q
    ||    
T  11807725 tc 11807726  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 168
Target Start/End: Complemental strand, 41862343 - 41862260
Alignment:
Q  86 aacgctctaggaattctgcctcgaaattccatagg-actgacctcagttccacattcgtataggcgaatctatcaagggtactc 168  Q
    ||||||||||||||| |||||| |||||||||||| | || ||||||||||| ||||  ||||| || | ||||||| ||||||    
T  41862343 aacgctctaggaattttgcctcaaaattccataggaattgtcctcagttccatattcacataggtgagtttatcaagagtactc 41862260  T

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Target: scaffold0014 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 27191 - 27330
Alignment:
Q  89 gctctaggaattctgcctcgaaattccatagga-ctgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    |||||||||||||||||||||||||||||| || | | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  27191 gctctaggaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 27290  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |  ||||||| ||||||||||||||||||||||||    
T  27291 tccataaggagtatagatctcattaagagtttctattatc 27330  T

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Target: scaffold0108 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 21240 - 21337
Alignment:
Q  130 agttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccactcaacatagagtatatatctcattaagagtttctattatc 227  Q
    ||||||||||||||||||| || ||||||||| |||||    || |||||||| |||||| |||||||||||| ||||||||||||||||||||||||    
T  21240 agttccacattcgtataggtgagtctatcaagagtacttctataactatgtactccactccacatagagtataaatctcattaagagtttctattatc 21337  T

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Target: scaffold0166 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 18190 - 18051
Alignment:
Q  89 gctctaggaattctgcctcgaaattccat-aggactgacctcagttccacattcgtataggcgaatctatcaagggtactcgcgtagctatgtaccccac 187  Q
    ||||||||||||||||||||||||||||| || || | ||||||||| |||| |||||||| || |||||||   ||||||  ||||||||||||  |||    
T  18190 gctctaggaattctgcctcgaaattccataagaaccggcctcagttctacatacgtataggtgagtctatcagaagtactcctgtagctatgtacttcac 18091  T
Q  188 tcaacatagagtatatatctcattaagagtttctattatc 227  Q
    || | |   |||||| ||||||||||||||||||||||||    
T  18090 tccataagaagtatagatctcattaagagtttctattatc 18051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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