View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2725_low_4 (Length: 503)
Name: NF2725_low_4
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2725_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 230 - 489
Target Start/End: Original strand, 24883472 - 24883738
Alignment:
| Q |
230 |
aatctgtttcatttcttcattttccatttgtaaacttatcatactctctccatagtatgatatcttgtgcagatcaaaataataaatgggcttcttacgc |
329 |
Q |
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| T |
24883472 |
aatctgtttcatttcttcattttccatttggaaacttatcatactctctccatagtatgatatcttgcgcagatcaaaataataaatgggcttcttacgc |
24883571 |
T |
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| Q |
330 |
tggacctggaggatggaatggtaaacatcctaataata-------tgtctatgatccctatttactatatcatattgatgaatttaaagatcacaatctc |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24883572 |
tggacctggaggatggaatggtaaacatcctaataatatactatttctctatgatccctatttactatatcatattgatgaatttaaagatcacaatctc |
24883671 |
T |
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| Q |
423 |
agttatttggtatacagatcctgacatgcttgaagttggaaatggaggtatgacaacagaagaatat |
489 |
Q |
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| T |
24883672 |
agttatttggtatacagatcctgacatgcttgaagttggaaatggaggtatgacaacagaagaatat |
24883738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 438 - 489
Target Start/End: Complemental strand, 32590259 - 32590208
Alignment:
| Q |
438 |
agatcctgacatgcttgaagttggaaatggaggtatgacaacagaagaatat |
489 |
Q |
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| T |
32590259 |
agatcctgatatgcttgaagttggaaatggaggcatgacaacagaggaatat |
32590208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 438 - 489
Target Start/End: Complemental strand, 32600707 - 32600656
Alignment:
| Q |
438 |
agatcctgacatgcttgaagttggaaatggaggtatgacaacagaagaatat |
489 |
Q |
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| T |
32600707 |
agatcctgatatgcttgaagttggaaatggaggcatgacaacagaggaatat |
32600656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 353
Target Start/End: Complemental strand, 32590408 - 32590366
Alignment:
| Q |
311 |
ataaatgggcttcttacgctggacctggaggatggaatggtaa |
353 |
Q |
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| T |
32590408 |
ataaatgggcatcttatgctggacctggaggatggaatggtaa |
32590366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 32600854 - 32600814
Alignment:
| Q |
313 |
aaatgggcttcttacgctggacctggaggatggaatggtaa |
353 |
Q |
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| T |
32600854 |
aaatgggcatcttatgctggacctggaggatggaatggtaa |
32600814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 438 - 489
Target Start/End: Complemental strand, 34578019 - 34577968
Alignment:
| Q |
438 |
agatcctgacatgcttgaagttggaaatggaggtatgacaacagaagaatat |
489 |
Q |
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| T |
34578019 |
agatcctgatatgcttgaagttggaaatggaggcatgaccacagaggaatat |
34577968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 438 - 489
Target Start/End: Complemental strand, 34593853 - 34593802
Alignment:
| Q |
438 |
agatcctgacatgcttgaagttggaaatggaggtatgacaacagaagaatat |
489 |
Q |
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| T |
34593853 |
agatcctgacatgcttgaggttgggaatggaggcatgactacagaagaatat |
34593802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 34578166 - 34578126
Alignment:
| Q |
313 |
aaatgggcttcttacgctggacctggaggatggaatggtaa |
353 |
Q |
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| T |
34578166 |
aaatgggcatcttatgctggacctggaggatggaatggtaa |
34578126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 353
Target Start/End: Complemental strand, 34593959 - 34593916
Alignment:
| Q |
310 |
aataaatgggcttcttacgctggacctggaggatggaatggtaa |
353 |
Q |
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||||||||||| || || |||||||||||||||||||||||||| |
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| T |
34593959 |
aataaatgggcatcgtatgctggacctggaggatggaatggtaa |
34593916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 478
Target Start/End: Original strand, 27526722 - 27526764
Alignment:
| Q |
436 |
acagatcctgacatgcttgaagttggaaatggaggtatgacaa |
478 |
Q |
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| T |
27526722 |
acagatcctgacatgcttgaggttggaaatggagggatgacaa |
27526764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 478
Target Start/End: Original strand, 27532376 - 27532418
Alignment:
| Q |
436 |
acagatcctgacatgcttgaagttggaaatggaggtatgacaa |
478 |
Q |
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| T |
27532376 |
acagatcctgatatgcttgaggttggaaatggagggatgacaa |
27532418 |
T |
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