View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2725_low_5 (Length: 485)
Name: NF2725_low_5
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2725_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Complemental strand, 31775550 - 31775101
Alignment:
| Q |
18 |
agagaacgagcgaataagaacatcagaagtatgtatgcagaaaattgttagaacatagaaactagtctaacaatttttaaggaaaaccttgagaaatagc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31775550 |
agagaacgagcgaataagaacatcagaagtatgtatgcagaaaattgttagaacatagaaactagtctaacaatttttaaggaaaaccttgagaaatagc |
31775451 |
T |
|
| Q |
118 |
ttgttaaaatggtcaagtgttatattaggtaaaaacaatggtaactaactatcattgtcacaaaacaacttcccaaaaacttgcaatttcaagagttagc |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31775450 |
ttgttaaaatggtcaagtattatattaggtaaaaacaatggtaactaactatcattctcacaaaacaacttcccaaaaacttgcaatttcaagagttagc |
31775351 |
T |
|
| Q |
218 |
acgttggtaaggcgactacgccactatagtcaattgtcgaaaaagtatttcaaagtacacataacgtaaggaggaattatgccattcaaaattctaaaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31775350 |
acgttggtaaggcgactacgccactatagtcaattgtcgaaaaagtatttcaaagtacacataacgtaaggaggaattatgccattcaaaattctaaaaa |
31775251 |
T |
|
| Q |
318 |
ttaattgaaactagaggtagtagttttaaatttagtaatagaacaatacaatgcaccaaaatcgacatgaatcacattggactctgttctgttctgttct |
417 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31775250 |
taaattgaaactagcggtagtagttttaaatttagtaatagaacaatacaatgcaccaaaatcgacatgaatcacattggactctgttctgttctgttct |
31775151 |
T |
|
| Q |
418 |
gttgcaacacagtcaagcgtaaaagtaacatatttctgttatacaaattc |
467 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31775150 |
gttgcaacacaatcaagcgtaaaagtaacatctttctgttatacaaattc |
31775101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University