View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2725_low_6 (Length: 458)
Name: NF2725_low_6
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2725_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 3 - 458
Target Start/End: Original strand, 53090149 - 53090601
Alignment:
| Q |
3 |
tgagaaatgttatcaacacacattctaacatacattttccaacaatgtgtgttgctagcatttctcttgtcacgctatattgaaaacacaaatgaattta |
102 |
Q |
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| T |
53090149 |
tgagaaatgttatcaacacacgttctaacatatacttttcaataatgtgtgttgctagcatttctcttgtcacactatattgaaagcacaaatgaattta |
53090248 |
T |
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| Q |
103 |
cttatatattgtgcacagacaaaagtaaaaattaaaagcagaannnnnnnnnncccttcacttcctttattcaattagacggtgaagaaagcaaaagaca |
202 |
Q |
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| T |
53090249 |
cttatatatagtgcacagacaaaagtaaaaattaaaagcagaattttttttt---cttcacttcctttattcaattagacggtgaagaaagcaaaagaca |
53090345 |
T |
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| Q |
203 |
caaatacaagcaagcacatgacacactctgcaaaattgatgacaatccgcacttgtagtttgtaccctgtttcnnnnnnnnt-cataggataggagaatc |
301 |
Q |
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| T |
53090346 |
caaatacaagcaagcacatgacacactctgcaaa-ttgatgacaatctgcacttgtagtttgtaccctgtttcaaaaaaaaaacataggataggagaatc |
53090444 |
T |
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| Q |
302 |
ttattgatggatggaccttcaattaaaatgtccaagaattccttattggtgatttaaataattcaagtaattaaccattttgatattctaataaaattga |
401 |
Q |
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| T |
53090445 |
ttattgatggatggaccttcaattaaaatgtccaagaattccttattggtgatttaaataattcaagtaattaaccattttgatattctaataaaattga |
53090544 |
T |
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| Q |
402 |
gtgatgtgatggtgtatagaacctggtgtttgagtttggttgcagttgcatagagct |
458 |
Q |
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| T |
53090545 |
gtgatgtgatggtgtatagaacctggtgtttgagtttggttgcagttgcatagagct |
53090601 |
T |
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