View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2726_high_1 (Length: 669)

Name: NF2726_high_1
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2726_high_1
NF2726_high_1
[»] chr1 (5 HSPs)
chr1 (32-653)||(1587242-1587877)
chr1 (517-559)||(40814373-40814415)
chr1 (514-599)||(3799935-3800020)
chr1 (514-555)||(11068805-11068846)
chr1 (517-625)||(51814497-51814605)
[»] chr2 (9 HSPs)
chr2 (514-559)||(27244377-27244422)
chr2 (514-556)||(8162027-8162069)
chr2 (514-625)||(7798998-7799108)
chr2 (522-625)||(35916089-35916192)
chr2 (514-564)||(3677315-3677365)
chr2 (514-604)||(4881729-4881819)
chr2 (514-555)||(15825678-15825719)
chr2 (514-559)||(41504898-41504943)
chr2 (591-623)||(42860353-42860385)
[»] chr7 (7 HSPs)
chr7 (514-559)||(45228987-45229032)
chr7 (514-559)||(30217948-30217993)
chr7 (514-559)||(41975956-41976001)
chr7 (514-558)||(24046595-24046639)
chr7 (514-559)||(7309425-7309469)
chr7 (514-559)||(22035467-22035512)
chr7 (514-559)||(25590680-25590725)
[»] chr3 (4 HSPs)
chr3 (514-624)||(45699890-45700000)
chr3 (514-559)||(52769945-52769990)
chr3 (514-559)||(45308864-45308909)
chr3 (514-559)||(51903840-51903885)
[»] chr8 (4 HSPs)
chr8 (514-559)||(11492035-11492080)
chr8 (516-559)||(3129828-3129871)
chr8 (514-559)||(15948011-15948056)
chr8 (514-559)||(40791857-40791902)
[»] chr4 (3 HSPs)
chr4 (514-559)||(43124689-43124734)
chr4 (514-559)||(12448777-12448821)
chr4 (514-559)||(32662823-32662868)
[»] chr5 (4 HSPs)
chr5 (570-634)||(3252307-3252371)
chr5 (514-559)||(37235990-37236035)
chr5 (521-569)||(15111386-15111434)
chr5 (523-559)||(15416242-15416278)
[»] chr6 (4 HSPs)
chr6 (514-559)||(1992209-1992254)
chr6 (514-559)||(3715521-3715566)
chr6 (514-559)||(12633078-12633123)
chr6 (514-559)||(32613102-32613147)


Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 32 - 653
Target Start/End: Complemental strand, 1587877 - 1587242
Alignment:
Q  32 tacatcattagagatgatgcaaagtttcactttcaacatcaaaccatggacaatttattccccttgtccatgatnnnnnnntttccttaaataaatgcta 131  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||        ||||||||||||||||||    
T  1587877 tacatcattagagatgatgcaaattttcactttcaacatcaaaccatggacaatttattcctcttgtccatgataaaaaaaattccttaaataaatgcta 1587778  T
Q  132 ctttatgtcttcaaaagtttgcaagttgtgtgagataattttgggtgcctcatagggctaatagaatctgagtgtgaactactatgccgaaaacatgggg 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1587777 ctttatgtcttcaaaagtttgcaagttgtgtgagataattttgggtgcctcatagggctaatagaatctgagtgtgaactactatgccgaaaacatgggg 1587678  T
Q  232 agtggcacgactacagtagataacctcagccagaataaaaaatgtcacccaatcagaatggttttgaaagggacaaaaagacagacaacacatccaatta 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1587677 agtggcacgactacagtagataacctcagccagaataaaaaatgtcacccaatcagaatggttttgaaagggacaaaaagacagacaacacatccaatta 1587578  T
Q  332 tatcagtgaaagagaatgttgactgaattagaagaatctcacagccagtgatatatgccaacagtcgtttaccttttttgtatcattatgctgttcacag 431  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1587577 tatcagtgaatgagaatgttgactgaattagaagaatctcacagccagtgatatatgccaacagtcgtttaccttttttgtatcattatgctgttcacat 1587478  T
Q  432 ttgtctactcttccataccatattaagaaatctttctttgctcctcccatttatatcctctaaca--------------aaggaaaatannnnnnnaaga 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||       ||||    
T  1587477 ttgtctactcttccataccatattaagaaatctttctttgctcctcccatttatatcctctaacaaaaatcatgatatgaaggaaaatatttttttaaga 1587378  T
Q  518 agctaaattagctcacttaaattgacactgaagagaatcgaaattaaaattttgaggaagagtacactcttaagtctcaagtcaatatcaacaggccaac 617  Q
    || ||||||||||| |||||||||||| ||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1587377 agttaaattagctcgcttaaattgacattgaagagaatttaaattaaaattttgaggaatagtacactcttaagtctcaagtcaatatcaacaggccaac 1587278  T
Q  618 tcaagtggattaagaaaatgttcttcctaattggtg 653  Q
    |||||||| ||| |||||||||||||||||||||||    
T  1587277 tcaagtgggttaggaaaatgttcttcctaattggtg 1587242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 517 - 559
Target Start/End: Original strand, 40814373 - 40814415
Alignment:
Q  517 aagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    ||||||||||||| ||||||||||||||||  |||||||||||    
T  40814373 aagctaaattagcccacttaaattgacactagagagaatcgaa 40814415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 599
Target Start/End: Complemental strand, 3800020 - 3799935
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaaattaaaattttgaggaagagtacactcttaagtctcaagt 599  Q
    |||||||||||||||| ||| ||||||| ||||  |||||||||||  | ||| || ||||| ||| ||| || ||||||||||||    
T  3800020 aagaagctaaattagcccacctaaattggcactagagagaatcgaacctgaaacttcgaggaggagcacattcctaagtctcaagt 3799935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 555
Target Start/End: Original strand, 11068805 - 11068846
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaat 555  Q
    |||||||||||||||| || |||||||||||||| |||||||    
T  11068805 aagaagctaaattagcccatttaaattgacactggagagaat 11068846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 517 - 625
Target Start/End: Complemental strand, 51814605 - 51814497
Alignment:
Q  517 aagctaaattagctcacttaaattgacactgaagagaatcgaaattaaaattttgaggaagagtacactcttaagtctcaagtcaatatcaacaggccaa 616  Q
    ||||||||||||| |||  |||||| ||| | |||||||||||  | | |  ||||||| ||| ||||||| |  ||||||||||||| || ||||||||    
T  51814605 aagctaaattagcccacccaaattggcaccggagagaatcgaacctgagaccttgaggaggagcacactctcagatctcaagtcaataccatcaggccaa 51814506  T
Q  617 ctcaagtgg 625  Q
    | |||||||    
T  51814505 cccaagtgg 51814497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 514 - 559
Target Start/End: Complemental strand, 27244422 - 27244377
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  27244422 aagaagctaaattagctcacttaaattaacactgaagagaatcgaa 27244377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 514 - 556
Target Start/End: Original strand, 8162027 - 8162069
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatc 556  Q
    ||||||||||||||| |||||||||||||||||| ||||||||    
T  8162027 aagaagctaaattagttcacttaaattgacactggagagaatc 8162069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 625
Target Start/End: Original strand, 7798998 - 7799108
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaaattaaaattttgaggaagagtacactcttaagtctcaagtcaatatcaacaggc 613  Q
    |||||||||||||||| ||||||||||| ||||| |||||||||||  | | || | ||||| ||| ||||||  ||||| |||| ||||| || ||||     
T  7798998 aagaagctaaattagc-cacttaaattggcactggagagaatcgaatctgagatctcgaggaggagcacactcccaagtcccaagccaataccaccagga 7799096  T
Q  614 caactcaagtgg 625  Q
    |||| |||||||    
T  7799097 caacccaagtgg 7799108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 625
Target Start/End: Complemental strand, 35916192 - 35916089
Alignment:
Q  522 aaattagctcacttaaattgacactgaagagaatcgaaattaaaattttgaggaagagtacactcttaagtctcaagtcaatatcaacaggccaactcaa 621  Q
    |||||||| ||||||||||||||  || ||| ||||||  | | || ||||||| ||  |||||||||| ||||||||||||| || ||| ||||| |||    
T  35916192 aaattagcccacttaaattgacatcgaggaggatcgaatctgagatcttgaggaggaacacactcttaaatctcaagtcaataccaccagaccaacccaa 35916093  T
Q  622 gtgg 625  Q
    ||||    
T  35916092 gtgg 35916089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 564
Target Start/End: Original strand, 3677315 - 3677365
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaaattaa 564  Q
    |||||||||||||| |||||||||||||| || | ||||||||||| ||||    
T  3677315 aagaagctaaattaactcacttaaattgataccggagagaatcgaacttaa 3677365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 604
Target Start/End: Complemental strand, 4881819 - 4881729
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaaattaaaattttgaggaagagtacactcttaagtctcaagtcaata 604  Q
    |||||| ||||||||||||| |||||||||| |   ||| ||||||  |||||  ||||||| ||| ||||||  ||||||||||||||||    
T  4881819 aagaagttaaattagctcacctaaattgacattagggagcatcgaatctaaaacattgaggaggagaacactcccaagtctcaagtcaata 4881729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 555
Target Start/End: Original strand, 15825678 - 15825719
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaat 555  Q
    ||||||||||||||||||| | |||||||||| |||||||||    
T  15825678 aagaagctaaattagctcaatcaaattgacaccgaagagaat 15825719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 559
Target Start/End: Original strand, 41504898 - 41504943
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    |||||||||||||| | ||||||||||||||| | |||||||||||    
T  41504898 aagaagctaaattaacccacttaaattgacaccggagagaatcgaa 41504943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 591 - 623
Target Start/End: Complemental strand, 42860385 - 42860353
Alignment:
Q  591 gtctcaagtcaatatcaacaggccaactcaagt 623  Q
    ||||||||||||||||| |||||||||||||||    
T  42860385 gtctcaagtcaatatcaccaggccaactcaagt 42860353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 514 - 559
Target Start/End: Original strand, 45228987 - 45229032
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||    
T  45228987 aagaagctaaattagcccacttaaattgacactggagagaatcgaa 45229032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 559
Target Start/End: Complemental strand, 30217993 - 30217948
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    |||||||| ||||||| |||||| ||||||||||||||||||||||    
T  30217993 aagaagcttaattagcccacttatattgacactgaagagaatcgaa 30217948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 559
Target Start/End: Complemental strand, 41976001 - 41975956
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    |||||||||||||||| ||||||||||||||||  |||||||||||    
T  41976001 aagaagctaaattagcccacttaaattgacactagagagaatcgaa 41975956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 514 - 558
Target Start/End: Complemental strand, 24046639 - 24046595
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcga 558  Q
    |||||||||||||||| ||||||||||||||| | ||||||||||    
T  24046639 aagaagctaaattagcccacttaaattgacaccggagagaatcga 24046595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 559
Target Start/End: Complemental strand, 7309469 - 7309425
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    |||||||||||||||| ||||||||||||||| | |||||||||||    
T  7309469 aagaagctaaattagcccacttaaattgacac-ggagagaatcgaa 7309425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 559
Target Start/End: Complemental strand, 22035512 - 22035467
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    |||||||||||||||  ||||||||||||||| | |||||||||||    
T  22035512 aagaagctaaattagtccacttaaattgacacaggagagaatcgaa 22035467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 559
Target Start/End: Complemental strand, 25590725 - 25590680
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    |||||||||||||||| |||| |||||||||| ||||| |||||||    
T  25590725 aagaagctaaattagcccactcaaattgacaccgaagaaaatcgaa 25590680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 514 - 624
Target Start/End: Original strand, 45699890 - 45700000
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaaattaaaattttgaggaagagtacactcttaagtctcaagtcaatatcaacaggc 613  Q
    |||||| ||||||||| ||||||||||| |||   |||||||||||  | ||| ||| |||| ||| ||||||| ||||| ||| |||||| ||| ||||    
T  45699890 aagaagttaaattagcccacttaaattggcacacgagagaatcgaatctcaaactttaaggaggagcacactctcaagtcccaaatcaataccaataggc 45699989  T
Q  614 caactcaagtg 624  Q
    |||| ||||||    
T  45699990 caacacaagtg 45700000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 559
Target Start/End: Original strand, 52769945 - 52769990
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    |||||||||||||||| ||| |||||||||||| ||||||||||||    
T  52769945 aagaagctaaattagcccacctaaattgacactaaagagaatcgaa 52769990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 559
Target Start/End: Original strand, 45308864 - 45308909
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    |||||||||||||||  ||||| ||||||||||||||| |||||||    
T  45308864 aagaagctaaattagtccacttgaattgacactgaagataatcgaa 45308909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 559
Target Start/End: Original strand, 51903840 - 51903885
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    |||||||||||||||| |||| |||||||||| | |||||||||||    
T  51903840 aagaagctaaattagcccactcaaattgacaccggagagaatcgaa 51903885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 559
Target Start/End: Original strand, 11492035 - 11492080
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||    
T  11492035 aagaagctaaattagcccacccaaattgacactgaagagaatcgaa 11492080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 559
Target Start/End: Original strand, 3129828 - 3129871
Alignment:
Q  516 gaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    |||||||||||||| ||||||||||||||||  |||||||||||    
T  3129828 gaagctaaattagcccacttaaattgacactagagagaatcgaa 3129871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 559
Target Start/End: Original strand, 15948011 - 15948056
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    |||||| ||||||||| |||||||| |||||||| |||||||||||    
T  15948011 aagaaggtaaattagcccacttaaaatgacactggagagaatcgaa 15948056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 559
Target Start/End: Original strand, 40791857 - 40791902
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    |||||||||||||||| ||||||||||||||||  ||| |||||||    
T  40791857 aagaagctaaattagcccacttaaattgacactagagaaaatcgaa 40791902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 559
Target Start/End: Complemental strand, 43124734 - 43124689
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    |||||||||||||||| |||| |||||||||||||||| |||||||    
T  43124734 aagaagctaaattagcccactcaaattgacactgaagaaaatcgaa 43124689  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 559
Target Start/End: Complemental strand, 12448821 - 12448777
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||||    
T  12448821 aagaagctaaattagctcac-taaattggcactaaagagaatcgaa 12448777  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 559
Target Start/End: Complemental strand, 32662868 - 32662823
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    |||||| ||||||||| ||||||||||||||| ||||| |||||||    
T  32662868 aagaagttaaattagcccacttaaattgacaccgaagaaaatcgaa 32662823  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 570 - 634
Target Start/End: Original strand, 3252307 - 3252371
Alignment:
Q  570 tgaggaagagtacactcttaagtctcaagtcaatatcaacaggccaactcaagtggattaagaaa 634  Q
    ||||||||||| |||||  |||||||||||||||| ||  |||||||| ||||||| ||||||||    
T  3252307 tgaggaagagtgcactcccaagtctcaagtcaataccactaggccaacccaagtgggttaagaaa 3252371  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 559
Target Start/End: Complemental strand, 37236035 - 37235990
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    ||||||||||||||||||||||||||||| || |  ||||||||||    
T  37236035 aagaagctaaattagctcacttaaattgataccggggagaatcgaa 37235990  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 521 - 569
Target Start/End: Original strand, 15111386 - 15111434
Alignment:
Q  521 taaattagctcacttaaattgacactgaagagaatcgaaattaaaattt 569  Q
    ||||||||| |||  |||||||| ||||||||||||||| |||||||||    
T  15111386 taaattagcccacccaaattgactctgaagagaatcgaacttaaaattt 15111434  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 559
Target Start/End: Complemental strand, 15416278 - 15416242
Alignment:
Q  523 aattagctcacttaaattgacactgaagagaatcgaa 559  Q
    |||||||||||| |||||||||||| |||||||||||    
T  15416278 aattagctcactcaaattgacactggagagaatcgaa 15416242  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 559
Target Start/End: Original strand, 1992209 - 1992254
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    |||||||||||||||| ||| ||||||||||||  |||||||||||    
T  1992209 aagaagctaaattagcacacctaaattgacactagagagaatcgaa 1992254  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 559
Target Start/End: Complemental strand, 3715566 - 3715521
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    |||||||||||| ||| ||| ||||||||||||| |||||||||||    
T  3715566 aagaagctaaatcagcccacctaaattgacactggagagaatcgaa 3715521  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 559
Target Start/End: Complemental strand, 12633123 - 12633078
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    |||||||||||||||  |||||||||||||| || |||||||||||    
T  12633123 aagaagctaaattagtccacttaaattgacattggagagaatcgaa 12633078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 559
Target Start/End: Original strand, 32613102 - 32613147
Alignment:
Q  514 aagaagctaaattagctcacttaaattgacactgaagagaatcgaa 559  Q
    ||||||||||| |||  || ||||||||||||||||||||||||||    
T  32613102 aagaagctaaactagtccatttaaattgacactgaagagaatcgaa 32613147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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