View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2726_high_12 (Length: 385)
Name: NF2726_high_12
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2726_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 15 - 371
Target Start/End: Original strand, 9386200 - 9386556
Alignment:
| Q |
15 |
tatacctggagaatgatgatgattgttccaaaactgcatatacatgattagtactactattcccatgtatgttacaacagctcgtgtccacgttaacata |
114 |
Q |
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| T |
9386200 |
tatacctggagaatgatgatgattgttccaaaactgcatatacatgattagtactactattcccatgtatgttacaacagctcatgtccacgttaacata |
9386299 |
T |
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| Q |
115 |
cgtatgatctttaattggattagaacaattgaaatacgctacctgcgtttgatcccgaaaacgaaacgagtacggctcaaacacaaaatctgctttgttg |
214 |
Q |
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| T |
9386300 |
catatgatctttaattggattagaacaattgaaatacgctacctgcgtttgatcccgaaaacgcaacgagtacggctcaaacacaaaatctgctttgttg |
9386399 |
T |
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| Q |
215 |
aaggaaagggaattactgaaactttgaggatataaaaagtaccgcgggatgaaagagcaattagcatcttccactgcacccgcgtcacttaatcgaatta |
314 |
Q |
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| T |
9386400 |
aaggaaagggaattactgaaactttgaggatataaaaagtaccgcgggatgaaagagcaattagcatcttccactgcacccgcgtcacttaatcgaatta |
9386499 |
T |
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| Q |
315 |
taaacctcttgtaatctatgtgttgtacatagtatttcccggagaacatggttaatg |
371 |
Q |
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| T |
9386500 |
taaacctcttgtaatctatgtgttgtacatagtatttcccggagaacatggttaatg |
9386556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 233 - 371
Target Start/End: Complemental strand, 9232227 - 9232089
Alignment:
| Q |
233 |
aaactttgaggatataaaaagtaccgcgggatgaaagagcaattagcatcttccactgcacccgcgtcacttaatcgaattataaacctcttgtaatcta |
332 |
Q |
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| T |
9232227 |
aaactttgatcatataaaaagtaccgtgggataaaagagcaattagcatcttccactgcacccgcgtcacttaatcgaattttaaatcccttgtaatcaa |
9232128 |
T |
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| Q |
333 |
tgtgttgtacatagtatttcccggagaacatggttaatg |
371 |
Q |
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| T |
9232127 |
tgtgttgtacatagtatttcccggagaacatggttaatg |
9232089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 33 - 155
Target Start/End: Complemental strand, 9232424 - 9232302
Alignment:
| Q |
33 |
atgattgttccaaaactgcatatacatgattagtactactattcccatgtatgttacaacagctcgtgtccacgttaacatacgtatgatctttaattgg |
132 |
Q |
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| T |
9232424 |
atgatggttccaaaacagaatacacatgattagtactactattcccatgtctgctacaacgactcgtgtccaccttaacgtaccgtggatcttttattgg |
9232325 |
T |
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| Q |
133 |
attagaacaattgaaatacgcta |
155 |
Q |
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| T |
9232324 |
acttgaacaattgaaatacgcta |
9232302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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