View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2726_high_18 (Length: 323)

Name: NF2726_high_18
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2726_high_18
NF2726_high_18
[»] chr4 (34 HSPs)
chr4 (7-323)||(2113784-2114099)
chr4 (138-310)||(29118429-29118602)
chr4 (56-307)||(3643062-3643311)
chr4 (139-310)||(23870005-23870176)
chr4 (139-287)||(36071557-36071705)
chr4 (57-268)||(15986788-15986999)
chr4 (125-268)||(4596445-4596588)
chr4 (106-273)||(7853290-7853456)
chr4 (106-277)||(5627487-5627653)
chr4 (108-268)||(53178749-53178907)
chr4 (127-303)||(12320368-12320545)
chr4 (121-267)||(7102144-7102289)
chr4 (193-307)||(55147880-55147994)
chr4 (108-229)||(20811476-20811597)
chr4 (108-193)||(48653743-48653828)
chr4 (111-271)||(25779614-25779774)
chr4 (108-233)||(29369858-29369991)
chr4 (139-246)||(43515857-43515964)
chr4 (123-207)||(40807830-40807914)
chr4 (108-208)||(375818-375917)
chr4 (163-267)||(41442477-41442578)
chr4 (107-208)||(55147638-55147739)
chr4 (108-208)||(1750052-1750152)
chr4 (108-176)||(51002647-51002715)
chr4 (224-307)||(6137165-6137248)
chr4 (155-209)||(9983750-9983802)
chr4 (238-277)||(25790454-25790493)
chr4 (102-153)||(29628291-29628342)
chr4 (107-170)||(37226332-37226395)
chr4 (224-274)||(38087653-38087703)
chr4 (218-276)||(47059682-47059740)
chr4 (218-276)||(47082062-47082120)
chr4 (127-208)||(35372098-35372179)
chr4 (193-246)||(40807924-40807977)
[»] chr5 (21 HSPs)
chr5 (56-310)||(3193439-3193693)
chr5 (55-289)||(39542389-39542621)
chr5 (56-277)||(32257602-32257823)
chr5 (131-291)||(12263638-12263800)
chr5 (107-268)||(502805-502959)
chr5 (57-277)||(36161035-36161249)
chr5 (161-296)||(18600164-18600294)
chr5 (92-273)||(16570449-16570630)
chr5 (56-242)||(18626684-18626866)
chr5 (56-167)||(18600482-18600593)
chr5 (108-268)||(20870634-20870789)
chr5 (112-268)||(16569275-16569429)
chr5 (93-267)||(25034307-25034480)
chr5 (218-306)||(7887266-7887354)
chr5 (131-208)||(37147848-37147925)
chr5 (137-268)||(3596910-3597041)
chr5 (78-231)||(2177846-2177998)
chr5 (87-267)||(8934060-8934241)
chr5 (224-276)||(10325717-10325769)
chr5 (106-166)||(27548500-27548560)
chr5 (139-208)||(10325603-10325672)
[»] scaffold0777 (1 HSPs)
scaffold0777 (57-307)||(5807-6056)
[»] chr7 (24 HSPs)
chr7 (66-320)||(33480418-33480671)
chr7 (137-293)||(21129325-21129481)
chr7 (59-290)||(35812592-35812822)
chr7 (103-268)||(26914307-26914472)
chr7 (103-290)||(13431629-13431815)
chr7 (106-266)||(3940619-3940778)
chr7 (56-308)||(21828121-21828372)
chr7 (93-295)||(9429291-9429492)
chr7 (92-246)||(42335898-42336052)
chr7 (131-307)||(40351759-40351936)
chr7 (105-229)||(3351119-3351243)
chr7 (92-267)||(22318617-22318791)
chr7 (63-254)||(26448382-26448578)
chr7 (150-225)||(31329570-31329644)
chr7 (89-233)||(1693989-1694132)
chr7 (103-204)||(36066176-36066276)
chr7 (224-306)||(30095845-30095927)
chr7 (164-249)||(26912346-26912431)
chr7 (93-209)||(49164731-49164846)
chr7 (127-261)||(12177813-12177948)
chr7 (61-170)||(48393203-48393311)
chr7 (193-297)||(21136097-21136196)
chr7 (225-306)||(15134537-15134618)
chr7 (218-277)||(21292809-21292868)
[»] chr6 (24 HSPs)
chr6 (106-304)||(31153604-31153802)
chr6 (106-277)||(34540827-34540998)
chr6 (108-290)||(12174298-12174480)
chr6 (104-307)||(10668846-10669046)
chr6 (63-307)||(13229268-13229500)
chr6 (150-270)||(34573197-34573319)
chr6 (93-271)||(9815627-9815804)
chr6 (60-155)||(31236882-31236976)
chr6 (60-233)||(21954405-21954576)
chr6 (64-307)||(35121874-35122119)
chr6 (93-209)||(34329777-34329893)
chr6 (60-155)||(31246258-31246352)
chr6 (64-210)||(33344879-33345024)
chr6 (108-216)||(11274605-11274712)
chr6 (131-268)||(31787815-31787952)
chr6 (241-304)||(33344760-33344823)
chr6 (58-208)||(10903085-10903235)
chr6 (88-172)||(35067098-35067182)
chr6 (106-201)||(5608079-5608173)
chr6 (127-209)||(32331535-32331617)
chr6 (222-274)||(34969390-34969442)
chr6 (131-210)||(9524828-9524906)
chr6 (224-274)||(4337976-4338026)
chr6 (60-181)||(21954763-21954882)
[»] chr8 (29 HSPs)
chr8 (134-303)||(26835589-26835758)
chr8 (101-288)||(13580320-13580507)
chr8 (180-308)||(34141984-34142112)
chr8 (112-208)||(36042839-36042934)
chr8 (108-212)||(41849437-41849540)
chr8 (106-231)||(43872544-43872669)
chr8 (140-308)||(22486596-22486763)
chr8 (150-290)||(22930299-22930439)
chr8 (163-308)||(4350692-4350840)
chr8 (71-229)||(13236221-13236379)
chr8 (114-261)||(35480977-35481124)
chr8 (85-267)||(7255401-7255585)
chr8 (131-267)||(12181824-12181956)
chr8 (131-267)||(12426252-12426384)
chr8 (108-209)||(31277947-31278049)
chr8 (200-273)||(28376652-28376725)
chr8 (149-233)||(18987181-18987265)
chr8 (105-210)||(9052935-9053039)
chr8 (65-194)||(24606846-24606974)
chr8 (134-209)||(21347499-21347574)
chr8 (106-209)||(26801911-26802013)
chr8 (131-288)||(9191180-9191331)
chr8 (125-209)||(32349535-32349620)
chr8 (125-209)||(32366196-32366281)
chr8 (135-274)||(31383468-31383607)
chr8 (139-229)||(17786508-17786598)
chr8 (141-267)||(32646581-32646705)
chr8 (106-209)||(39295473-39295575)
chr8 (252-306)||(21348507-21348561)
[»] chr1 (29 HSPs)
chr1 (127-307)||(1240388-1240572)
chr1 (108-275)||(1153694-1153860)
chr1 (108-290)||(3265435-3265616)
chr1 (138-305)||(10976117-10976282)
chr1 (139-274)||(33735750-33735885)
chr1 (179-273)||(8246760-8246854)
chr1 (108-268)||(35204188-35204344)
chr1 (56-242)||(15102968-15103150)
chr1 (103-209)||(38742453-38742559)
chr1 (139-317)||(23897902-23898073)
chr1 (132-209)||(4626523-4626601)
chr1 (106-229)||(35405375-35405498)
chr1 (127-268)||(45385222-45385365)
chr1 (114-317)||(34298927-34299133)
chr1 (106-205)||(22667162-22667261)
chr1 (150-316)||(23935140-23935299)
chr1 (105-162)||(20756780-20756837)
chr1 (108-181)||(30718168-30718241)
chr1 (93-209)||(49762405-49762520)
chr1 (252-307)||(35405285-35405339)
chr1 (235-305)||(40863-40933)
chr1 (127-205)||(29062354-29062432)
chr1 (198-288)||(29664171-29664261)
chr1 (243-307)||(22667683-22667747)
chr1 (56-99)||(26321659-26321702)
chr1 (158-209)||(42783946-42783997)
chr1 (150-209)||(44807381-44807440)
chr1 (140-209)||(45012809-45012878)
chr1 (180-268)||(16141557-16141645)
[»] chr3 (19 HSPs)
chr3 (138-268)||(33510096-33510226)
chr3 (131-267)||(15670919-15671055)
chr3 (106-246)||(33682629-33682769)
chr3 (105-273)||(8266560-8266729)
chr3 (107-273)||(2758070-2758238)
chr3 (149-268)||(54417032-54417151)
chr3 (108-271)||(39838466-39838626)
chr3 (109-272)||(168656-168816)
chr3 (138-274)||(11383585-11383723)
chr3 (131-268)||(17713276-17713409)
chr3 (131-268)||(19014505-19014638)
chr3 (131-233)||(27538777-27538879)
chr3 (105-210)||(11365105-11365210)
chr3 (131-274)||(19149848-19149985)
chr3 (139-208)||(46744007-46744076)
chr3 (106-210)||(47000833-47000936)
chr3 (222-277)||(27541151-27541206)
chr3 (101-212)||(33290755-33290865)
chr3 (202-268)||(52706724-52706790)
[»] chr2 (32 HSPs)
chr2 (106-277)||(5163783-5163954)
chr2 (106-277)||(40876892-40877063)
chr2 (103-229)||(36186574-36186700)
chr2 (66-273)||(30257707-30257915)
chr2 (106-233)||(16646926-16647053)
chr2 (106-265)||(18829934-18830100)
chr2 (127-272)||(38561838-38561982)
chr2 (138-268)||(28556604-28556734)
chr2 (152-270)||(28148887-28149004)
chr2 (88-212)||(44157271-44157394)
chr2 (107-196)||(38608314-38608403)
chr2 (106-249)||(38134092-38134232)
chr2 (106-182)||(40705888-40705964)
chr2 (108-191)||(38565174-38565256)
chr2 (127-233)||(34345964-34346068)
chr2 (62-247)||(16547683-16547870)
chr2 (107-183)||(32596747-32596823)
chr2 (137-277)||(17271258-17271401)
chr2 (108-295)||(15925450-15925641)
chr2 (121-229)||(32415357-32415463)
chr2 (101-208)||(35280896-35280999)
chr2 (251-308)||(16647946-16648003)
chr2 (178-267)||(36506911-36507000)
chr2 (222-306)||(14951611-14951695)
chr2 (253-313)||(37911387-37911447)
chr2 (121-154)||(637104-637137)
chr2 (127-208)||(2887013-2887094)
chr2 (224-277)||(4206647-4206700)
chr2 (108-196)||(14952045-14952134)
chr2 (137-210)||(26350439-26350511)
chr2 (222-267)||(33819217-33819262)
chr2 (226-270)||(28226833-28226877)
[»] scaffold0531 (1 HSPs)
scaffold0531 (163-270)||(9699-9806)
[»] scaffold0527 (2 HSPs)
scaffold0527 (103-202)||(1711-1810)
scaffold0527 (103-202)||(9774-9873)
[»] scaffold1173 (1 HSPs)
scaffold1173 (109-209)||(387-487)
[»] scaffold0001 (1 HSPs)
scaffold0001 (185-294)||(65012-65123)
[»] scaffold0003 (1 HSPs)
scaffold0003 (108-267)||(327934-328092)


Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 7 - 323
Target Start/End: Complemental strand, 2114099 - 2113784
Alignment:
Q  7 tgtgagaggtttaactaaattttaagggcggttagtgtgttttctccaggggccggtcctaagatttttagtgccctaggtgaattaataaaactatgtc 106  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||  |||||||||||||||||||||||||| | |||| ||||||||||||||    
T  2114099 tgtgagaggtttaactaaattttaagggcaattagtgtgttttctccagga-ccggtcctaagatttttagtgccctaagcgaatcaataaaactatgtc 2114001  T
Q  107 cttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2114000 cttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatca 2113901  T
Q  207 aagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcccct 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||| |||||    
T  2113900 aagcaatttagaaagaaatatatctatgtagtactaactactacataaagataataattttggtgcccctatgaaaatggtgccctgggctcccacccct 2113801  T
Q  307 cgaggccacccctgatt 323  Q
    ||||||||| |||||||    
T  2113800 cgaggccacacctgatt 2113784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 138 - 310
Target Start/End: Complemental strand, 29118602 - 29118429
Alignment:
Q  138 attttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaa-gcaatttagaaagaaatatatctatgta 236  Q
    |||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||    
T  29118602 attttttattgcaaaatattcattcataatcaaagttctttaaaaacatattttcaatataattaattaaaagcaatttaaaaagaaatatatctatgta 29118503  T
Q  237 gtactaactactacataaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcccctcgag 310  Q
    ||||||||||||||||||||||||||||||||||||||| |  ||||||||||| || |||||| |||||||||    
T  29118502 gtactaactactacataaaaataataattttggtgccccaataaaaatggtgccctgagctcccacccctcgag 29118429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 56 - 307
Target Start/End: Original strand, 3643062 - 3643311
Alignment:
Q  56 gggccggtcctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaaga 155  Q
    ||||||||||||| | || | |||||||  | |||  ||||||| | |||| |||||||||||  ||| | |||||||||| ||||||| ||||| || |    
T  3643062 gggccggtcctaaaacttatggtgccctgagcgaaacaataaaattgtgtcattttaattattccaatatttttcttcttggattttttgttgcacaaaa 3643161  T
Q  156 ttaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaa 255  Q
    || ||| || ||||| | |||||||||| |  |||||||||||||||||||| |||| ||| |||||||||||||||| ||||||||||||||| |  ||    
T  3643162 ttcatttattatcaaagctctttaaaaataacttttcaatataattaatcaatgcaaattaaaaagaaatatatctatatagtactaactacta-agtaa 3643260  T
Q  256 aataataattttggtgcccctaggaaaatggtgccttgggctcccgcccctc 307  Q
    ||||||||||||| || || ||  ||||||||||| |||||| |||||||||    
T  3643261 aataataattttgatgtcctta-aaaaatggtgccatgggctaccgcccctc 3643311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 139 - 310
Target Start/End: Complemental strand, 23870176 - 23870005
Alignment:
Q  139 ttttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagt 238  Q
    |||||| |||||||| ||| ||| |||||||| ||| | |||||| |||||||||||| ||||||||||| | | ||| ||| | |||||||||| ||||    
T  23870176 ttttttgttgcaaaatattcatttataatcaaagttatctaaaaatatattttcaatagaattaatcaaaacgaattaaaaaaatatatatctatatagt 23870077  T
Q  239 actaactactacataaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcccctcgag 310  Q
    |||||||||||  ||||||||||||||||||||||||||  ||| ||||||| ||||||  |||||||||||    
T  23870076 actaactactaagtaaaaataataattttggtgcccctaaaaaagtggtgccctgggctgtcgcccctcgag 23870005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 139 - 287
Target Start/End: Original strand, 36071557 - 36071705
Alignment:
Q  139 ttttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagt 238  Q
    |||||| ||||| |||||| ||| |||||||| ||||| |||||| |||||||||||  |||||||||||| || ||| |||||||||||||||| ||||    
T  36071557 ttttttgttgcataagattcatttataatcaaagttctctaaaaatatattttcaattgaattaatcaaagaaaattaaaaagaaatatatctatatagt 36071656  T
Q  239 actaactactacataaaaataataattttggtgcccctaggaaaatggt 287  Q
    ||||||||  |  |||||||||||||||| |||||||||| ||||||||    
T  36071657 actaactatcaagtaaaaataataattttagtgcccctagaaaaatggt 36071705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 57 - 268
Target Start/End: Original strand, 15986788 - 15986999
Alignment:
Q  57 ggccggtcctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagat 156  Q
    |||||||| ||| || |||||||||||||  ||||| || ||| |  | | |||||||||||| ||||| ||||||||||||| || ||  | |||||||    
T  15986788 ggccggtcttaaaatatttagtgccctagacgaattgatgaaattgcgcctttttaattatttaaatgtttttcttcttgtatcttataccgtaaaagat 15986887  T
Q  157 taattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaa 256  Q
    | |||||| || ||||||||||||||  |||||||||||| ||||||||||| ||  ||| ||| |||||||||||| |||||||||||||||  ||||     
T  15986888 tcattcatgattaaggttctttaaaattatattttcaatagaattaatcaaaacacattaaaaataaatatatctatatagtactaactactaattaaag 15986987  T
Q  257 ataataattttg 268  Q
    |||| |||||||    
T  15986988 ataacaattttg 15986999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 268
Target Start/End: Original strand, 4596445 - 4596588
Alignment:
Q  125 tctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaa 224  Q
    |||||||| ||| ||||||| |||||||||||| |||||||||||||||| ||  |  | |||||||||||| ||| ||||||||  | ||| ||| |||    
T  4596445 tctttctttttgcattttttgttgcaaaagattcattcataatcaaggtttttctagtatatattttcaataaaatcaatcaaagtgaattaaaaacaaa 4596544  T
Q  225 tatatctatgtagtactaactactacataaaaataataattttg 268  Q
    ||||| ||| || ||||||| |||| ||||||||||||||||||    
T  4596545 tatatatatatattactaacaactaaataaaaataataattttg 4596588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 273
Target Start/End: Complemental strand, 7853456 - 7853290
Alignment:
Q  106 ccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatc 205  Q
    |||||||||||||| |||   |||||||||  |||||| ||||||||  ||| ||| |||||||| ||| | |||||| ||||||||||||| |||||||    
T  7853456 ccttttaattatttcaatagttttcttcttacattttt-attgcaaagaattcatttataatcaaagttttctaaaaatatattttcaatatcattaatc 7853358  T
Q  206 aaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcc 273  Q
    |||   | ||| || || |||||||||| |||||||||||||||  |||||||||||| |||||||||    
T  7853357 aaactgaattaaaaggatatatatctatatagtactaactactaagtaaaaataataaatttggtgcc 7853290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 277
Target Start/End: Complemental strand, 5627653 - 5627487
Alignment:
Q  106 ccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatc 205  Q
    |||||||||||||  ||| | |||||| ||| ||||||| |||||||| ||| ||| |||||||  ||| | ||||||||| ||||||||||||||||||    
T  5627653 ccttttaattattcaaatatttttcttattgcattttttgttgcaaaatattcatttataatcagagttatataaaaacattttttcaatataattaatc 5627554  T
Q  206 aaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgccccta 277  Q
    ||| | | ||| |||| ||||||| |||    |||||||||| |  ||||||||||||||||||||||||||    
T  5627553 aaaacgaattaaaaag-aatatatatat----tactaactaccatgtaaaaataataattttggtgccccta 5627487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 268
Target Start/End: Complemental strand, 53178907 - 53178749
Alignment:
Q  108 ttttaattatttgaatgtctttcttcttgtatttttta-ttgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatca 206  Q
    |||||||||||| |||||||||||| | |||||||||  |||||||| ||| |||||||||||| |||| ||||||| |||  ||||||| |||||||||    
T  53178907 ttttaattatttaaatgtctttcttatggtatttttttgttgcaaaa-attcattcataatcaaagttcgttaaaaatatacattcaataaaattaatca 53178809  T
Q  207 aagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttg 268  Q
    ||| || ||  ||| |||||||| ||| || |||||||||||| ||||| | ||||||||||    
T  53178808 aagtaagtt--aaaaaaatatatttatataatactaactactaaataaataaaataattttg 53178749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 127 - 303
Target Start/End: Complemental strand, 12320545 - 12320368
Alignment:
Q  127 tttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaata 226  Q
    |||||||||  ||||||| |||||||| ||| ||| |||||| | ||| |||||||| ||||| |||||||||||||||||| | | ||| ||||| |||    
T  12320545 tttcttcttacattttttgttgcaaaatattcatttataatcgaagttttttaaaaaaatattctcaatataattaatcaaaccgaattaaaaagatata 12320446  T
Q  227 tatctatgtagtactaactactacataaaaa-taataattttggtgcccctaggaaaatggtgccttgggctcccgcc 303  Q
    ||||||| |  ||||||||||||  |||||| ||||||||||  ||||||||  | ||||||| | |||||| |||||    
T  12320445 tatctatattatactaactactaagtaaaaagtaataattttcatgcccctaaaataatggtgtcatgggctaccgcc 12320368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 121 - 267
Target Start/End: Complemental strand, 7102289 - 7102144
Alignment:
Q  121 aatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaa 220  Q
    ||||| |||||||||||| ||||| ||||| |||||| ||| ||||| || ||||| ||||||  |||||||||||  |||||||||| ||| ||| |||    
T  7102289 aatgtttttcttcttgtactttttgttgcacaagattcatttataataaaagttctctaaaaatgtattttcaataggattaatcaaaacaaatta-aaa 7102191  T
Q  221 gaaatatatctatgtagtactaactactacataaaaataataatttt 267  Q
     |||||||||||| || |||||||| |    ||||||||||||||||    
T  7102190 aaaatatatctatataatactaactgccgactaaaaataataatttt 7102144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 193 - 307
Target Start/End: Original strand, 55147880 - 55147994
Alignment:
Q  193 aatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcccctaggaaaatggtgcctt 292  Q
    |||| ||||||||||| ||| ||| |||||||||||||||||| ||| | |||| ||  ||||||||||||||||||||||||||   ||| ||||||||    
T  55147880 aatagaattaatcaaaacaaattaaaaagaaatatatctatgttgtagtgactattaagtaaaaataataattttggtgcccctaaagaaaaggtgcctt 55147979  T
Q  293 gggctcccgcccctc 307  Q
    || || || ||||||    
T  55147980 ggactgccacccctc 55147994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 229
Target Start/End: Original strand, 20811476 - 20811597
Alignment:
Q  108 ttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaa 207  Q
    ||||||||||| |||||| || ||||||  ||||||  ||||||||  || | ||||||||||  ||||||||||| ||||||||||||||| |||| ||    
T  20811476 ttttaattattcgaatgttttgcttctttcatttttcgttgcaaaaacttcactcataatcaaaattctttaaaaatatattttcaatataaataattaa 20811575  T
Q  208 agcaatttagaaagaaatatat 229  Q
    ||||| ||| ||| ||||||||    
T  20811576 agcaagttaaaaacaaatatat 20811597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 48653828 - 48653743
Alignment:
Q  108 ttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttca 193  Q
    ||||||||||| ||||||||||||||||| || |||| |||||||||||| ||||||||| ||| |||| ||| || |||||||||    
T  48653828 ttttaattattcgaatgtctttcttcttgcatgttttgttgcaaaagattcattcataattaagattctctaagaaaatattttca 48653743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 271
Target Start/End: Original strand, 25779614 - 25779774
Alignment:
Q  111 taattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagc 210  Q
    ||||||||||||| |||| ||| ||| ||| ||| ||||| |||||| |||||||||||| ||| | || ||| ||||||| || | |||||||||||      
T  25779614 taattatttgaatatcttcctttttgcattctttgttgcagaagattcattcataatcaaagttttctacaaatatatttttaacaaaattaatcaaaaa 25779713  T
Q  211 aatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtg 271  Q
    ||  || |||||||||||| |   | |||||||||| ||  ||||||||||||||||||||    
T  25779714 aaggtaaaaagaaatatatgtgcatcgtactaactaataagtaaaaataataattttggtg 25779774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 108 - 233
Target Start/End: Original strand, 29369858 - 29369991
Alignment:
Q  108 ttttaattatttgaatgtctttcttcttgtattttttattg-----caaaagattaattcata---atcaaggttctttaaaaacatattttcaatataa 199  Q
    ||||||||||||||||||||||||||||||||||||| |||      |||||||| |||||||   || | | |||| |||||| |||||||||||| ||    
T  29369858 ttttaattatttgaatgtctttcttcttgtattttttgttgtaaattaaaagattcattcataattatgatgattctctaaaaatatattttcaatagaa 29369957  T
Q  200 ttaatcaaagcaatttagaaagaaatatatctat 233  Q
    ||||||||| ||| ||| ||| |||| |||||||    
T  29369958 ttaatcaaaacaaattaaaaataaatttatctat 29369991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 139 - 246
Target Start/End: Original strand, 43515857 - 43515964
Alignment:
Q  139 ttttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagt 238  Q
    |||||| |||||||||||| ||| |||||||| ||| | ||| || ||||| | |||||||||||||||| ||| ||| ||||| |||||||||| || |    
T  43515857 ttttttgttgcaaaagattcatttataatcaaagttttctaacaatatattcttaatataattaatcaaaccaaattaaaaagatatatatctatataat 43515956  T
Q  239 actaacta 246  Q
    ||||||||    
T  43515957 actaacta 43515964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 40807830 - 40807914
Alignment:
Q  123 tgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaa 207  Q
    |||||||||| ||| ||||||| ||| | |||||| |||||||||||| ||| | |||||||||||||| |||| ||||||||||    
T  40807830 tgtctttctttttgcattttttgttggataagattcattcataatcaatgttatctaaaaacatatttttaatagaattaatcaa 40807914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 375818 - 375917
Alignment:
Q  108 ttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaa 207  Q
    |||||||||||| ||||| |||||||||  ||||||||| |  |||||||   |||| ||||| ||| |||||||||||||| ||||||| |||||||||    
T  375818 ttttaattatttaaatgtatttcttcttacattttttatggttaaagattccgtcattatcaaagttttttaaaaacatattatcaatat-attaatcaa 375916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 267
Target Start/End: Original strand, 41442477 - 41442578
Alignment:
Q  163 ataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataata 262  Q
    ||||||||  |||| |||||| ||||||||| ||||||||||||||| || ||| ||| || ||||||||| | |||||    |||| ||||||||||||    
T  41442477 ataatcaaacttctctaaaaagatattttcagtataattaatcaaagtaaattaaaaataagtatatctatattgtact---gactaaataaaaataata 41442573  T
Q  263 atttt 267  Q
    |||||    
T  41442574 atttt 41442578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 55147638 - 55147739
Alignment:
Q  107 cttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatca 206  Q
    ||||||||||||  ||| | |||| | || |||||||| ||| | |||||| ||| |||||||| ||||| |||||| | |||||||||| |||||||||    
T  55147638 cttttaattattctaatatttttcatattctattttttgttgtacaagattcatttataatcaaagttctctaaaaagacattttcaataaaattaatca 55147737  T
Q  207 aa 208  Q
    ||    
T  55147738 aa 55147739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 1750152 - 1750052
Alignment:
Q  108 ttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaa 207  Q
    |||||||||||  ||| |||||||||||  ||||||  ||| |||||||| |||  ||||||||||||||||||||   ||||| |||| ||| ||||||    
T  1750152 ttttaattattaaaatatctttcttctttcatttttcgttgtaaaagatttatttgtaatcaaggttctttaaaaatgcatttttaatagaataaatcaa 1750053  T
Q  208 a 208  Q
    |    
T  1750052 a 1750052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 51002647 - 51002715
Alignment:
Q  108 ttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttct 176  Q
    |||||||||||  |||||||||||||||  ||||||||| |||||||||| ||||| ||  ||||||||    
T  51002647 ttttaattattcaaatgtctttcttcttacattttttatcgcaaaagattcattcaaaaataaggttct 51002715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 6137248 - 6137165
Alignment:
Q  224 atatatctatgtagtactaactactacataaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcccctc 307  Q
    |||||| ||| || |||||||||||| |||||||||||||||||  ||| ||||  ||||||||| | ||| || |||||||||    
T  6137248 atatatatatatattactaactactaaataaaaataataattttaatgctcctaaaaaaatggtgtcctggactgccgcccctc 6137165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 9983750 - 9983802
Alignment:
Q  155 attaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaag 209  Q
    ||||||||||||  ||| |||| |||||| |||||||||||||||||||||||||    
T  9983750 attaattcataa--aagattctctaaaaatatattttcaatataattaatcaaag 9983802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 25790493 - 25790454
Alignment:
Q  238 tactaactactacataaaaataataattttggtgccccta 277  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  25790493 tactaactattaaataaaaataataattttggtgccccta 25790454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 29628291 - 29628342
Alignment:
Q  102 atgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaa 153  Q
    ||||||||||||||||||||||||  ||||||||  ||||||| ||||||||    
T  29628291 atgtccttttaattatttgaatgttcttcttcttacattttttgttgcaaaa 29628342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 37226395 - 37226332
Alignment:
Q  107 cttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaa 170  Q
    ||||||||||||||||||||||| || ||  ||||||| |||||||||||| ||  ||||||||    
T  37226395 cttttaattatttgaatgtcttttttatttcattttttgttgcaaaagattcatcaataatcaa 37226332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 38087703 - 38087653
Alignment:
Q  224 atatatctatgtagtactaactactacataaaaataataattttggtgccc 274  Q
    |||||||||| | |||||||||| ||  |||||||||||||||||||||||    
T  38087703 atatatctatattgtactaactattaagtaaaaataataattttggtgccc 38087653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 47059740 - 47059682
Alignment:
Q  218 aaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcccct 276  Q
    |||||||||||| | | || ||||||||| ||  |||||||||||||||||||||||||    
T  47059740 aaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgcccct 47059682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 47082062 - 47082120
Alignment:
Q  218 aaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcccct 276  Q
    |||||||||||| | | || ||||||||| ||  |||||||||||||||||||||||||    
T  47082062 aaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgcccct 47082120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 35372098 - 35372179
Alignment:
Q  127 tttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaa 208  Q
    |||||||||  ||||||| |||||  |||||  || ||||| || | ||| |||||| ||||||||||||||||||||||||    
T  35372098 tttcttcttacattttttgttgcatgagattcgtttataattaaagctctctaaaaatatattttcaatataattaatcaaa 35372179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 40807924 - 40807977
Alignment:
Q  193 aatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaacta 246  Q
    |||| ||||||||||||| | ||| |||||||||||||||| || |||||||||    
T  40807924 aatagaattaatcaaagcgaattaaaaagaaatatatctatataatactaacta 40807977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 56 - 310
Target Start/End: Original strand, 3193439 - 3193693
Alignment:
Q  56 gggccggtcctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaaga 155  Q
    |||||||||||||||||||||| ||||| || |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3193439 gggccggtcctaagatttttagcgccctgggcgaattaataaaattatgtccttttaattatttgaatgtctttcttcttgcattttttattgcaaaaga 3193538  T
Q  156 ttaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaa 255  Q
    || |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  3193539 ttcattcataatcaaagttctttaaaaacatattttcaatataattattcaaagcaatttaaaaagaaatatatctatgtagtactacctactacataaa 3193638  T
Q  256 aataataattttggtgcccctaggaaaatggtgccttgggctcccgcccctcgag 310  Q
    ||||||||||||||||||| || |||||||||||| |||||||||||||||||||    
T  3193639 aataataattttggtgcccttatgaaaatggtgccctgggctcccgcccctcgag 3193693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 55 - 289
Target Start/End: Complemental strand, 39542621 - 39542389
Alignment:
Q  55 ggggccggtcctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaag 154  Q
    |||| ||||| ||| |||||| |||||||| | |||||||||||| | || |||||||||||| |||||||||||||||||| ||||||||||| |||||    
T  39542621 ggggtcggtcttaatatttttggtgccctatgcgaattaataaaattgtgcccttttaattatatgaatgtctttcttcttgcattttttattgtaaaag 39542522  T
Q  155 attaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataa 254  Q
     || |||||||||||| ||||||||||||||||||||||||||||| ||| ||  |  |||| ||| | ||||||  || |||||||||||||||| |||    
T  39542521 -tttattcataatcaaagttctttaaaaacatattttcaatataatcaataaacacgcttta-aaaaatatatattcatatagtactaactactacgtaa 39542424  T
Q  255 aaataataattttggtgcccctaggaaaatggtgc 289  Q
    |||||||||||||| |||||||   ||||||||||    
T  39542423 aaataataattttgatgcccctgtaaaaatggtgc 39542389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 56 - 277
Target Start/End: Original strand, 32257602 - 32257823
Alignment:
Q  56 gggccggtcctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaaga 155  Q
    |||||||||||||||||||| || || |  || || |||||||||| || |||||||||||||  ||| | ||| |||||| ||||||| || || || |    
T  32257602 gggccggtcctaagattttttgtaccatgtgtaaaataataaaactgtgcccttttaattattccaatttttttgttcttgcattttttgttacacaaaa 32257701  T
Q  156 ttaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaa 255  Q
    || ||| |||||||| ||||| |||||  |||||||||||| ||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||  ||||    
T  32257702 ttcatttataatcaaagttctctaaaagtatattttcaataaaattaatcaaagcaaattaaaaaaaaatatatctatgtaatactaactactaagtaaa 32257801  T
Q  256 aataataattttggtgccccta 277  Q
    |||||| |||||| ||| ||||    
T  32257802 aataattattttgatgctccta 32257823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 131 - 291
Target Start/End: Original strand, 12263638 - 12263800
Alignment:
Q  131 ttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaattt--agaaagaaatata 228  Q
    |||||| || ||||||||||||||||| ||  |||||||| |||||||||||| |||||||||||| ||||||||||||| | ||  | ||| ||| |||    
T  12263638 ttcttgcatcttttattgcaaaagattcatctataatcaaagttctttaaaaatatattttcaatagaattaatcaaagcgaattaaaaaaaaaaaaata 12263737  T
Q  229 tctatgtagtactaactactacataaaaataataattttggtgcccctaggaaaatggtgcct 291  Q
    ||||| |||||||||| | ||  ||||||||||||||||||||||||||  ||||||||||||    
T  12263738 tctatatagtactaaccattaagtaaaaataataattttggtgcccctaaaaaaatggtgcct 12263800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 107 - 268
Target Start/End: Complemental strand, 502959 - 502805
Alignment:
Q  107 cttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatca 206  Q
    ||||||||||||||||||||||    ||| | |||||| |||||||||||| |||||||||||| ||||| |||||| |||||||||||| |||||||||    
T  502959 cttttaattatttgaatgtctt----cttttttttttttttgcaaaagattcattcataatcaaagttctctaaaaatatattttcaatagaattaatca 502864  T
Q  207 aagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttg 268  Q
    |||  | ||| |||||||||||||||| || |||||||| |||  |||||||||||||||||    
T  502863 aag--agttaaaaagaaatatatctatataatactaact-ctaagtaaaaataataattttg 502805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 57 - 277
Target Start/End: Complemental strand, 36161249 - 36161035
Alignment:
Q  57 ggccggtcctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagat 156  Q
    |||||||||||||||||||| |||    || ||||||||||| || |||  |||||||||||  |||   ||| ||||| ||||||||||| ||||||||    
T  36161249 ggccggtcctaagatttttaatgcatcgggggaattaataaa-ctgtgtttttttaattatta-aatactttttttcttatattttttattacaaaagat 36161152  T
Q  157 taattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaa 256  Q
    | |||||| ||||| ||| ||||||| |||||||||||||||||||||||||  |||||| ||| ||   ||||||| || || ||||||||||||||||    
T  36161151 tcattcatgatcaaagttttttaaaa-catattttcaatataattaatcaaaataatttaaaaaaaa---tatctatataatattaactactacataaaa 36161056  T
Q  257 ataataattttggtgccccta 277  Q
    |||||||||||| | ||||||    
T  36161055 ataataattttgataccccta 36161035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 296
Target Start/End: Complemental strand, 18600294 - 18600164
Alignment:
Q  161 tcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataa 260  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||| | ||| | ||||||| |||||||     || ||||||||| ||||||||||    
T  18600294 tcataatcaaagttctctaaaaacatattttcaatataattaatcaaatcgattcaaaaagaaagatatcta-----taataactactatataaaaataa 18600200  T
Q  261 taattttggtgcccctaggaaaatggtgccttgggc 296  Q
    |||||||| ||||||||  ||| ||||||| |||||    
T  18600199 taattttgatgcccctataaaattggtgccctgggc 18600164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 273
Target Start/End: Original strand, 16570449 - 16570630
Alignment:
Q  92 taataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatatttt 191  Q
    |||||||| |||| | || ||||||||| ||| | ||| || ||| ||||| | | ||||||||||||||  ||||||| ||||| |||||| |||||||    
T  16570449 taataaaattatgccattctaattatttcaatatttttgtttttgcattttctgtggcaaaagattaatttttaatcaaagttctctaaaaatatatttt 16570548  T
Q  192 caatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcc 273  Q
     |||| ||||||||||||  | ||| |||||||||||||||| | |||| ||||| ||  ||||||||||||||||| ||||    
T  16570549 taatagaattaatcaaagtgaattaaaaagaaatatatctatatggtaccaactaataagtaaaaataataattttgatgcc 16570630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 242
Target Start/End: Complemental strand, 18626866 - 18626684
Alignment:
Q  56 gggccggtcctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaaga 155  Q
    |||||||||||||| ||||| ||||| |||| |||  ||||||| | ||||||||||||||||| ||    | | |||||||||||||| ||||| ||||    
T  18626866 gggccggtcctaagttttttggtgccataggcgaaacaataaaattgtgtccttttaattattttaa----tattttcttgtattttttgttgcacaaga 18626771  T
Q  156 ttaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtacta 242  Q
    || ||| |||||||| |||||  ||||| || | ||||||| ||||||||||| |||  || ||||||||||||||||  |||||||    
T  18626770 ttcatttataatcaaagttctcaaaaaatatttcttcaatagaattaatcaaaacaaagtaaaaagaaatatatctatacagtacta 18626684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 167
Target Start/End: Complemental strand, 18600593 - 18600482
Alignment:
Q  56 gggccggtcctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaaga 155  Q
    |||||||||||||||||||||||||||| |  ||||| ||||||   | ||  ||||||||||||||  |||||||||||||||||||||||||||||||    
T  18600593 gggccggtcctaagatttttagtgccctggacgaattcataaaatcttatctctttaattatttgaacatctttcttcttgtattttttattgcaaaaga 18600494  T
Q  156 ttaattcataat 167  Q
     | |||||||||    
T  18600493 atcattcataat 18600482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 108 - 268
Target Start/End: Complemental strand, 20870789 - 20870634
Alignment:
Q  108 ttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaa 207  Q
    |||||||||||| ||| | ||| |||||| ||||||| ||||| || ||| ||| |||||||| ||| | |||||| ||||| |||||| ||||||||||    
T  20870789 ttttaattattttaatattttt-ttcttgcattttttgttgcagaatattcatttataatcaaagttatctaaaaatatattatcaataaaattaatcaa 20870691  T
Q  208 agcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttg 268  Q
    ||  | ||| |||||||||    ||| ||||||||||||||| ||||||||||||||||||    
T  20870690 agggaattaaaaagaaata----tatatagtactaactactaaataaaaataataattttg 20870634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 268
Target Start/End: Original strand, 16569275 - 16569429
Alignment:
Q  112 aattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagca 211  Q
    |||||||  |||||||||||||||| |||||||  ||||| ||||| ||| ||| |||||||| | ||||||||||||||||||| ||||||  || |      
T  16569275 aattattgcaatgtctttcttcttgcatttttt--tgcaatagatttatttatattcaaggttttctaaaaacatattttcaatagaattaacaaatggg 16569372  T
Q  212 atttagaaagaaatatatctatgtagtactaactactacataaaaataataattttg 268  Q
    | ||| ||||||||||| |||| || || || ||||||  |||||||||||||||||    
T  16569373 agttaaaaagaaatatacctatataatattacctactaagtaaaaataataattttg 16569429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 93 - 267
Target Start/End: Original strand, 25034307 - 25034480
Alignment:
Q  93 aataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttc 192  Q
    ||||||| |||||| ||||||||| || |||   |||||||||  ||||||| |||||||| ||| ||| || || || ||| | |||||| | |||||     
T  25034307 aataaaattatgtcattttaattacttcaatagttttcttcttacattttttgttgcaaaaaattcatttattattaaagttttctaaaaatacattttt 25034406  T
Q  193 aatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataatttt 267  Q
    |||| ||||||||||| ||||||| |||||||||||||||| |||   |||||| |  |||||||||||||||||    
T  25034407 aatacaattaatcaaaccaattta-aaagaaatatatctatatagcgttaactattgaataaaaataataatttt 25034480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 306
Target Start/End: Original strand, 7887266 - 7887354
Alignment:
Q  218 aaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcccct 306  Q
    ||||||| |||||||| |||||||||||||||  ||||||||||||||||||||||||||    ||||||||| |||||| || |||||    
T  7887266 aaagaaacatatctatatagtactaactactaagtaaaaataataattttggtgcccctaaaccaatggtgccctgggctgccacccct 7887354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 131 - 208
Target Start/End: Original strand, 37147848 - 37147925
Alignment:
Q  131 ttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaa 208  Q
    |||||||||||||| ||| |||| ||| ||| ||||| |||||| |||||||| |||||||||||| |||||||||||    
T  37147848 ttcttgtattttttcttgtaaaatattcatttataattaaggttttttaaaaatatattttcaatacaattaatcaaa 37147925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 268
Target Start/End: Original strand, 3596910 - 3597041
Alignment:
Q  137 tattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgta 236  Q
    |||||||| || ||||||||| | | ||| ||||  || | |||||| ||||||| |||| ||||||||||| | | ||| |||||||||||||    ||    
T  3596910 tattttttttttcaaaagattcacttatattcaaatttttataaaaatatatttttaatagaattaatcaaaacgaattaaaaagaaatatatcacaata 3597009  T
Q  237 gtactaactactacataaaaataataattttg 268  Q
     |||||| ||||| ||||||||||||||||||    
T  3597010 atactaattactaaataaaaataataattttg 3597041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 231
Target Start/End: Complemental strand, 2177998 - 2177846
Alignment:
Q  78 tgccctaggtgaattaataaaactatgtccttttaattatttgaatgtc-tttcttcttgtattttttattgcaaaagattaattcataatcaaggttct 176  Q
    ||||||||| ||||||||||   | |||| ||||||||||| || |||| ||| ||||| |||||||  ||| ||  |||||||| ||||| ||||||||    
T  2177998 tgccctaggcgaattaataagttt-tgtctttttaattattcgagtgtcattttttcttatatttttg-ttgtaattgattaatttataattaaggttct 2177901  T
Q  177 ttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatct 231  Q
    ||||||| ||||||| |||| ||||| ||||| ||| ||| ||| | ||||||||    
T  2177900 ttaaaaatatatttttaatagaattattcaaatcaaattaaaaatagatatatct 2177846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 267
Target Start/End: Complemental strand, 8934241 - 8934060
Alignment:
Q  87 tgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattg---caaaagattaattcataatcaaggttctttaaaaa 183  Q
    ||||| ||||||  ||| || |||||||||||| ||| | |||||||||  |||| || |||   |||| |||| ||||||||| |||  ||| ||||||    
T  8934241 tgaatcaataaagatatatcattttaattatttaaatatttttcttcttacatttctttttgttacaaatgattcattcataattaagactctctaaaaa 8934142  T
Q  184 catattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataatttt 267  Q
     |||| |||||||||||||||||||   | ||| ||| |||||||| ||||||  |||||||| || ||| |||||||||||||    
T  8934141 tatatcttcaatataattaatcaaaatgagtta-aaaaaaatatatatatgta-cactaactattaaatataaataataatttt 8934060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 10325717 - 10325769
Alignment:
Q  224 atatatctatgtagtactaactactacataaaaataataattttggtgcccct 276  Q
    |||||| ||| |||||||||| ||||  |||||||||||||||||||||||||    
T  10325717 atatatatatatagtactaacaactaagtaaaaataataattttggtgcccct 10325769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 27548500 - 27548560
Alignment:
Q  106 ccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataa 166  Q
    |||||||||||||  ||||||||||||||| ||||||||| ||| ||| ||| ||||||||    
T  27548500 ccttttaattattcaaatgtctttcttcttatattttttagtgcgaaaaattcattcataa 27548560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 10325603 - 10325672
Alignment:
Q  139 ttttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaa 208  Q
    |||||| |||||||||||| ||| || ||||| ||| | ||||||  |||| ||||||||||||||||||    
T  10325603 ttttttgttgcaaaagattcatttatgatcaaagttttctaaaaatgtattctcaatataattaatcaaa 10325672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 57 - 307
Target Start/End: Complemental strand, 6056 - 5807
Alignment:
Q  57 ggccggtcctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagat 156  Q
    |||||||||||||||||||| |||||| |  |||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  6056 ggccggtcctaagatttttaatgccctggacgaattaatgaaattatgtccttttaattatttgaatgtctttcttcatgtattttttattgcaaaaaat 5957  T
Q  157 taattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaa 256  Q
    | ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5956 tcattcataatcaaaattctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactact-cataaaa 5858  T
Q  257 ataataattttggtgcccctaggaaaatggtgccttgggctcccgcccctc 307  Q
    |||||||||||||||||| || ||| |||||||||||||||||||||||||    
T  5857 ataataattttggtgcccatatgaagatggtgccttgggctcccgcccctc 5807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 66 - 320
Target Start/End: Original strand, 33480418 - 33480671
Alignment:
Q  66 taagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcata 165  Q
    |||||||||||||||| |    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33480418 taagatttttagtgccttgaacgaattaataaaattatgtccttttaattatttgaatgtctttcttcttgtattttttattgcagaagattaattcata 33480517  T
Q  166 atcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataatt 265  Q
    || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33480518 at-aaggttctttaaaaacatatttttaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactattacataaaaataataatt 33480616  T
Q  266 ttggtgcccctaggaaaatggtgccttgggctcccgcccctcgaggccacccctg 320  Q
    ||||||||||||  |||||| || | ||||||||||| ||||  |||||||||||    
T  33480617 ttggtgcccctataaaaatgatgtcctgggctcccgctcctcagggccacccctg 33480671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 137 - 293
Target Start/End: Original strand, 21129325 - 21129481
Alignment:
Q  137 tattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgta 236  Q
    ||||||||||||||||||||||||| ||||||||  |||| |||||| |||||||||||| ||||||||||| ||| ||| |||||||||||||||| |     
T  21129325 tattttttattgcaaaagattaatttataatcaaaattctctaaaaaaatattttcaatagaattaatcaaaccaaattaaaaagaaatatatctatttt 21129424  T
Q  237 gtactaactactacataaaaataataattttggtgcccctaggaaaatggtgccttg 293  Q
    ||| | ||||||| |||| |||||||| ||| || ||||||  ||||||||||||||    
T  21129425 gtagtgactactaaataagaataataaatttagtacccctaaaaaaatggtgccttg 21129481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 290
Target Start/End: Complemental strand, 35812822 - 35812592
Alignment:
Q  59 ccggtcctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagatta 158  Q
    |||| ||||||||||||| ||||||||| ||| |||||||  | ||| |||| |||||||  ||| |  ||||||||| ||||||| |||||||| |||     
T  35812822 ccggccctaagatttttaatgccctaggcgaaataataaat-tgtgtgcttt-aattattccaatattattcttcttgcattttttgttgcaaaatattc 35812725  T
Q  159 attcataatcaaggttctttaaaaacatattt-tcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaa 257  Q
    ||| |||||||| ||| | |||||| |||||| |||||| |||| |||||||| | ||| |||||||||||||||| ||||||||| || ||  ||||||    
T  35812724 atttataatcaaagttatctaaaaatatatttatcaatagaattgatcaaagcgaattaaaaagaaatatatctatatagtactaattattaagtaaaaa 35812625  T
Q  258 taataattttggtgcccctaggaaaatggtgcc 290  Q
    ||||||||||| ||||||||  |||||||||||    
T  35812624 taataattttgatgcccctaaaaaaatggtgcc 35812592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 103 - 268
Target Start/End: Original strand, 26914307 - 26914472
Alignment:
Q  103 tgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataatta 202  Q
    ||||||||||||||||| ||| | |||||||||| ||||||| |||||||| ||| ||| ||||| || ||| |||||||| ||||||||||||||||||    
T  26914307 tgtccttttaattattttaatatttttcttcttgcattttttgttgcaaaatattcatttataattaacgttatttaaaaatatattttcaatataatta 26914406  T
Q  203 atcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttg 268  Q
    |||||| | | ||| ||  ||| |||| ||| || ||||||||||||  |||||||||||||||||    
T  26914407 atcaaaacgaattaaaagtaaacatatgtatataatactaactactaagtaaaaataataattttg 26914472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 290
Target Start/End: Original strand, 13431629 - 13431815
Alignment:
Q  103 tgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataatta 202  Q
    |||| ||||||||||| ||| || ||| |||||||||||||| |||| ||||||| ||||||||||||||||||  | ||| |||||||||||| |||||    
T  13431629 tgtcattttaattattcgaaagttttt-ttcttgtattttttgttgctaaagattcattcataatcaaggttctccacaaatatattttcaatagaatta 13431727  T
Q  203 atcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcccctaggaaaatggtgcc 290  Q
     |||||  || | | ||| |||||||||||| || ||||| |||||| |||| |||||||||||| |||| ||||  |||||||||||    
T  13431728 ttcaaaaaaaatcaaaaataaatatatctatataatactacctactaaataagaataataattttagtgctcctaaaaaaatggtgcc 13431815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 266
Target Start/End: Original strand, 3940619 - 3940778
Alignment:
Q  106 ccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatc 205  Q
    |||||||||||||  ||| | |||||| ||||||||||  ||||| |||||| ||| |||||||| |||||||||||| ||||||| |||| ||||||||    
T  3940619 ccttttaattattctaatatttttctttttgtatttttg-ttgcacaagatttatttataatcaaagttctttaaaaagatattttaaatagaattaatc 3940717  T
Q  206 aaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattt 266  Q
    |||| || ||| |||||||||||||||| |  |||| |||||||  |||||||||||||||    
T  3940718 aaagtaaattaaaaagaaatatatctatattatacttactactaagtaaaaataataattt 3940778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 308
Target Start/End: Complemental strand, 21828372 - 21828121
Alignment:
Q  56 gggccggtcctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaaga 155  Q
    |||||||||||||||||||| |||||  ||| |||  || |||| | |  |||||||||||||  ||| | |||| |||| |||||||| ||||| ||||    
T  21828372 gggccggtcctaagatttttggtgcctgaggcgaaagaaaaaaattgtacccttttaattattctaatatttttcgtcttttattttttgttgcacaaga 21828273  T
Q  156 ttaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaa 255  Q
    || ||| |||||||| ||||| ||||||  |||||||||||  |||||||||| ||| ||| |||||||||||||||| | ||| | ||||  |  ||||    
T  21828272 ttcatttataatcaaagttctctaaaaa-gtattttcaatagcattaatcaaaacaagttaaaaagaaatatatctattttgtagtgactatgaagtaaa 21828174  T
Q  256 aataataattttggtgcccctaggaaaatggtgccttgggctcccgcccctcg 308  Q
    ||||||||||||  ||||||||   |||||||||| |||||| | ||||||||    
T  21828173 aataataatttttatgcccctaaagaaatggtgccctgggctgcagcccctcg 21828121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 93 - 295
Target Start/End: Original strand, 9429291 - 9429492
Alignment:
Q  93 aataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttc 192  Q
    ||||||| |||||  |||||||||||| ||| | || ||||| | ||||  | |||||||| ||| ||| |||||| | |||||||||| | ||||||||    
T  9429291 aataaaattatgttattttaattattttaatattttacttctagcatttgctgttgcaaaaaatttatttataatcgaagttctttaaata-atattttc 9429389  T
Q  193 aatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcccctaggaaaatggtgcctt 292  Q
    |||| ||||||||||| | |  || |||||||||||| ||| || ||||||||| || ||||||||| |||||||||||||||||  |||||| || |||    
T  9429390 aatagaattaatcaaaacgagataaaaagaaatatatttatataatactaactattaaataaaaatactaattttggtgcccctaaaaaaatgatgtctt 9429489  T
Q  293 ggg 295  Q
    |||    
T  9429490 ggg 9429492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 92 - 246
Target Start/End: Original strand, 42335898 - 42336052
Alignment:
Q  92 taataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatatttt 191  Q
    |||||||| |||||| ||||||| |||| |||   ||| |||||  ||||||| |||||||||||| ||| |||||||| ||| |||||||| |||||||    
T  42335898 taataaaattatgtctttttaatcattttaatagtttttttcttacattttttgttgcaaaagattcatttataatcaaagttttttaaaaatatatttt 42335997  T
Q  192 caatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaacta 246  Q
    || |||||||||| ||| | | ||| |||||||||||||||| || |||||||||    
T  42335998 cactataattaattaaaccgaattaaaaagaaatatatctatataatactaacta 42336052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 307
Target Start/End: Original strand, 40351759 - 40351936
Alignment:
Q  131 ttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaag-caatttagaaagaaatatat 229  Q
    |||||| ||||||| |||  ||||||| ||| |||||||| |||||||||||| |||||||||||| |||||| ||| |  |||| | ||| || |||||    
T  40351759 ttcttgcattttttgttgataaagatttatttataatcaaagttctttaaaaatatattttcaatagaattaaacaaggataattaaaaaataattatat 40351858  T
Q  230 ctatgtagtactaactactacataaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcccctc 307  Q
    |||| || |||||||||||   |||||||||||| |||||||||| ||  | ||| || || |||||| |||||||||    
T  40351859 ctatataatactaactactgagtaaaaataataactttggtgcccttaaaataattgtaccctgggcttccgcccctc 40351936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 105 - 229
Target Start/End: Complemental strand, 3351243 - 3351119
Alignment:
Q  105 tccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaat 204  Q
    ||||||||||||||  ||| | |||||||||| ||||||| ||| |||| ||| ||| |||||||| ||| | |||||| ||| |||||||| |||||||    
T  3351243 tccttttaattattaaaatatttttcttcttgcattttttgttgtaaaatattcatttataatcaaagttatctaaaaatataatttcaatagaattaat 3351144  T
Q  205 caaagcaatttagaaagaaatatat 229  Q
    |||||| | ||| ||||||||||||    
T  3351143 caaagcgaattaaaaagaaatatat 3351119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 267
Target Start/End: Original strand, 22318617 - 22318791
Alignment:
Q  92 taataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatatttt 191  Q
    |||||||| | || ||||||| |||||| |||   ||| |||||  ||||||| |||||||||||| ||| ||||| || ||| | |||||| ||||| |    
T  22318617 taataaaattgtgcccttttagttatttcaatagtttttttcttacattttttgttgcaaaagatttatttataattaaagttttctaaaaatatattct 22318716  T
Q  192 caatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataatttt 267  Q
    |||||||||||||||||   | ||| ||||| | |||||||| || || ||||||||| |||||||||||||||||    
T  22318717 caatataattaatcaaacggaatta-aaagatacatatctatataatattaactactaaataaaaataataatttt 22318791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 254
Target Start/End: Complemental strand, 26448578 - 26448382
Alignment:
Q  63 tcctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaa-tgtctttcttcttgtattttttattgcaaaagattaatt 161  Q
    ||||||||||| | ||||| | | |||| |||||||| | |||| |||||||||||| || | | ||| |||||| ||||||| |||||||||||| |||    
T  26448578 tcctaagatttctggtgcctttgatgaaataataaaattttgtctttttaattatttcaaatattttttttcttgcattttttgttgcaaaagattcatt 26448479  T
Q  162 cataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaat----atatctatgtagtactaactactacataa 254  Q
     || ||||| ||||| |||||| ||| ||| | || ||||||||||||  | ||| ||||||||    |||||||| ||||||||||||||| ||||    
T  26448478 tattatcaaagttctctaaaaatatacttttagtagaattaatcaaagtgaattaaaaagaaatatatatatctatatagtactaactactagataa 26448382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 225
Target Start/End: Original strand, 31329570 - 31329644
Alignment:
Q  150 aaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaat 225  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| ||| ||| ||||||||    
T  31329570 aaaagattaattcataataaaggttctttaaaaatatattttcaatataattaatgaaatcaagtta-aaagaaat 31329644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 89 - 233
Target Start/End: Original strand, 1693989 - 1694132
Alignment:
Q  89 aattaataaaactatgtccttttaattatttgaatgtctttctt-cttgtattttttatt-gcaaaagattaattcataatcaaggttctttaaaaacat 186  Q
    ||||||||||  |||| |||||||||||||||||||| ||| || |||| ||||||| || | |||| | | ||||||||||||||||||||||||| ||    
T  1693989 aattaataaagttatgcccttttaattatttgaatgtatttttttcttgcattttttttttgtaaaaaactcattcataatcaaggttctttaaaaatat 1694088  T
Q  187 attttcaatataattaatcaaagcaatttagaaagaaatatatctat 233  Q
    | || ||||| || |||||||||||||||| |||| |||||||||||    
T  1694089 acttacaatagaa-taatcaaagcaattta-aaag-aatatatctat 1694132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 204
Target Start/End: Complemental strand, 36066276 - 36066176
Alignment:
Q  103 tgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataatta 202  Q
    |||| ||||| |||||  |||||||||||||||||||||||  ||| |||||||| ||||||||||||  |||| |||||| |||||||||||| |||||    
T  36066276 tgtctttttagttattcaaatgtctttcttcttgtatttttg-ttgtaaaagatttattcataatcaaaattctctaaaaatatattttcaatacaatta 36066178  T
Q  203 at 204  Q
    ||    
T  36066177 at 36066176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 306
Target Start/End: Original strand, 30095845 - 30095927
Alignment:
Q  224 atatatctatgtagtactaactactacataaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcccct 306  Q
    |||||| ||| || || |||||||||  ||||||||||||||||||||||||||  ||||||||||| |||||| ||||||||    
T  30095845 atatatatatatattaataactactaagtaaaaataataattttggtgcccctaaaaaaatggtgccctgggctgccgcccct 30095927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 26912431 - 26912346
Alignment:
Q  164 taatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactacta 249  Q
    ||||||| ||| | |||||| |||| || |||| ||||||||||||| | ||| |||||||||||||||| |||||||||||||||    
T  26912431 taatcaaagttatctaaaaatatatcttgaatagaattaatcaaagcgaattaaaaagaaatatatctatatagtactaactacta 26912346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 49164731 - 49164846
Alignment:
Q  93 aataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttc 192  Q
    ||||||| | |||| |||||||||| | |||||||||||||||| ||||| |  ||||||||||| ||||||||  ||| |||| |||||| |||||||     
T  49164731 aataaaattgtgtcattttaattatgtaaatgtctttcttcttgcattttattctgcaaaagattcattcataaataagattctctaaaaa-atattttt 49164829  T
Q  193 aatataattaatcaaag 209  Q
    |||  ||||||||||||    
T  49164830 aattaaattaatcaaag 49164846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 261
Target Start/End: Complemental strand, 12177948 - 12177813
Alignment:
Q  127 tttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaata 226  Q
    |||||||||  ||||||| |||||||||||| ||  ||||| ||| || | |||||| |||||||||||| ||||||| ||| | | ||| ||||| |||    
T  12177948 tttcttcttacattttttgttgcaaaagattcatctataataaagttt-tctaaaaatatattttcaataaaattaattaaaccgaattaaaaagatata 12177850  T
Q  227 tat--ctatgtagtactaactactacataaaaataat 261  Q
    |||  |||| |||||||||||||||  ||||||||||    
T  12177849 tatatctatatagtactaactactaagtaaaaataat 12177813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 170
Target Start/End: Original strand, 48393203 - 48393311
Alignment:
Q  61 ggtcctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaat 160  Q
    |||| ||| |||||| ||| |||| | |||||||||||  | |||| |||||||||||| ||||||||||||||| |||||||| |||  ||||||| ||    
T  48393203 ggtcttaatattttttgtgtcctaagagaattaataaagttgtgtc-ttttaattatttaaatgtctttcttcttatattttttgttgtgaaagatttat 48393301  T
Q  161 tcataatcaa 170  Q
    | ||||||||    
T  48393302 ttataatcaa 48393311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 297
Target Start/End: Complemental strand, 21136196 - 21136097
Alignment:
Q  193 aatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcccctaggaaaatggtgcctt 292  Q
    |||||||||||||||||||| ||| |||  ||||||| ||   ||||||||||||||  ||| |||||| |||||||||||| ||  |||||||||||||    
T  21136196 aatataattaatcaaagcaagttaaaaa--aatatatatac--agtactaactactaactaagaataatcattttggtgccctta-aaaaatggtgcctt 21136102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 15134537 - 15134618
Alignment:
Q  225 tatatctatgtagtactaactactacataaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcccct 306  Q
    ||||| ||| |||||||| ||||||  ||||||||||||||||||||||||||  ||  || |||| |||||| ||||||||    
T  15134537 tatatatatatagtactagctactaagtaaaaataataattttggtgcccctaaaaatttgatgccctgggctgccgcccct 15134618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 21292809 - 21292868
Alignment:
Q  218 aaagaaatatatctatgtagtactaactactacataaaaataataattttggtgccccta 277  Q
    |||||||||||| ||| |  || |||||||||  ||||||||||||||||||||||||||    
T  21292809 aaagaaatatatttatatgatattaactactaagtaaaaataataattttggtgccccta 21292868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 106 - 304
Target Start/End: Original strand, 31153604 - 31153802
Alignment:
Q  106 ccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatc 205  Q
    |||||||||||||||| ||| |||  ||||| |||||||||||||||||||| |||||| ||||| ||| |||||||||||||||||||||||||||||     
T  31153604 ccttttaattatttgagtgttttttctcttgcattttttattgcaaaagattcattcatgatcaaagttatttaaaaacatattttcaatataattaatt 31153703  T
Q  206 aaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgccc 304  Q
    |||   ||||| ||  |||||||||||| ||||||| ||||| |||| || ||||||||||   || || || |||||||||||| | |||||||||||    
T  31153704 aaaaggatttaaaattaaatatatctatatagtactgactacaacattaatataataatttgaatgtccttacgaaaatggtgccctaggctcccgccc 31153802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 106 - 277
Target Start/End: Original strand, 34540827 - 34540998
Alignment:
Q  106 ccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatc 205  Q
    ||||||||| |||||||||| ||||||| |||||||||| |||||||| ||| ||||||||||||| || |||||||| |||||||||||| || |||||    
T  34540827 ccttttaatcatttgaatgtatttcttcatgtattttttgttgcaaaaaatttattcataatcaagattatttaaaaatatattttcaatagaactaatc 34540926  T
Q  206 aaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgccccta 277  Q
    ||| | | |||  ||||||||||||||| ||||| ||| |||||  |||||||||||||||| ||| |||||    
T  34540927 aaaacgagttaataagaaatatatctatatagtattaattactaagtaaaaataataattttagtgtcccta 34540998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 108 - 290
Target Start/End: Complemental strand, 12174480 - 12174298
Alignment:
Q  108 ttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaa 207  Q
    ||||| |||||| ||| | || ||||||| | ||||| || ||||||||| ||| | ||| || ||||| |||||| ||||||| |||||||||||||||    
T  12174480 ttttatttatttcaatattttccttcttgcagtttttgttacaaaagattcatttacaattaaagttctctaaaaatatatttttaatataattaatcaa 12174381  T
Q  208 agcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcccctaggaaaatggtgcc 290  Q
    | | | ||| |||||||||||||||| |||||||||||||||  |||||||||||||||||||||| ||   |||||||||||    
T  12174380 aacgaattaaaaagaaatatatctatatagtactaactactaagtaaaaataataattttggtgcctcttaaaaaatggtgcc 12174298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 104 - 307
Target Start/End: Original strand, 10668846 - 10669046
Alignment:
Q  104 gtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaa 203  Q
    |||||||||||||||  ||| | |||||| ||| ||||||| |  ||| ||||| ||| |||||||| ||| | |||||| |||||||||||||||||||    
T  10668846 gtccttttaattattctaatatttttctttttggattttttgtctcaatagattcatttataatcaacgtt-tctaaaaa-atattttcaatataattaa 10668943  T
Q  204 tcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcc 303  Q
    |||||  |||| | ||||| |||||||||| || ||||||||| ||  ||||||||||||||||||||||||||  ||||||||||| ||| || | |||    
T  10668944 tcaaatgaattca-aaagatatatatctatataatactaactaataagtaaaaataataattttggtgcccctaaaaaaatggtgccctggactgctgcc 10669042  T
Q  304 cctc 307  Q
    ||||    
T  10669043 cctc 10669046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 63 - 307
Target Start/End: Complemental strand, 13229500 - 13229268
Alignment:
Q  63 tcctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattc 162  Q
    |||||||||||||  ||| || ||||||  || |||| |||| |||||||||||||  |||    ||||||||||||||||| ||||| |||||| |||     
T  13229500 tcctaagatttttgatgcactgggtgaaagaaaaaaattatgcccttttaattattctaat----ttcttcttgtattttttgttgcacaagattcattt 13229405  T
Q  163 ataatcaaggttctttaaaaacatattttcaatataattaatcaaag-caatttagaaagaaatatatctatgtagtactaactactacataaaaataat 261  Q
    ||||||         |||||| |||||||||||| |||||||||| | ||| ||| |||||||| | ||||| | ||||  |||||||  ||||||||||    
T  13229404 ataatc---------taaaaagatattttcaatagaattaatcaaggacaaattaaaaagaaatttttctatattgtaccgactactaagtaaaaataat 13229314  T
Q  262 aattttggtgcccctaggaaaatggtgccttgggctcccgcccctc 307  Q
    |||||||||||| |||  |||||||||||||||||| |||||||||    
T  13229313 aattttggtgcctctaaaaaaatggtgccttgggctgccgcccctc 13229268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 270
Target Start/End: Original strand, 34573197 - 34573319
Alignment:
Q  150 aaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaa--atatatctatgtagtactaactac 247  Q
    |||||||| ||| |||||||| |||||||||||| |||||||||||| ||||||||||| | | ||| ||||||  |||||||||| || || |||||||    
T  34573197 aaaagattcatttataatcaaagttctttaaaaatatattttcaataaaattaatcaaaccgaattaaaaagaaatatatatctatataatattaactac 34573296  T
Q  248 tacataaaaataataattttggt 270  Q
    || ||||||||||||||||||||    
T  34573297 taaataaaaataataattttggt 34573319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 93 - 271
Target Start/End: Original strand, 9815627 - 9815804
Alignment:
Q  93 aataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttc 192  Q
    ||||||| | || |||||||||||||  ||| |  ||||||||| ||||||| || ||||| | | ||| |||||||  ||| | |||||| ||||||||    
T  9815627 aataaaattgtgcccttttaattattctaatattattcttcttgcattttttgttacaaaa-actcatttataatcatagttttctaaaaatatattttc 9815725  T
Q  193 aatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtg 271  Q
    |||| | ||||||||||| | ||| |||||||||||||||| ||||| |||||||||  ||||||||||||||||||||    
T  9815726 aataaagttaatcaaagcgaattaaaaagaaatatatctatatagtattaactactaagtaaaaataataattttggtg 9815804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 31236882 - 31236976
Alignment:
Q  60 cggtcctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaaga 155  Q
    ||||||||||||||| |||||||| |  |||||||||||| | |||| ||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  31236882 cggtcctaagattttaagtgccctggacgaattaataaaattgtgtcattttaattatttg-atgtctttcttcttgcattttttattgcaaaaga 31236976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 233
Target Start/End: Original strand, 21954405 - 21954576
Alignment:
Q  60 cggtcctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaa 159  Q
    |||||||||||||||| ||||| |||  |||| ||||||  |||||||||  | |||||  || |||||| || ||||||||||| |||||||||| | |    
T  21954405 cggtcctaagattttttgtgccttagacgaatcaataaagttatgtcctt--agttattccaacgtctttgtttttgtattttttgttgcaaaagactta 21954502  T
Q  160 ttcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctat 233  Q
    |||||||| |||| |||| ||||| || ||||||||  ||||||||||| ||| ||| ||||||||||| ||||    
T  21954503 ttcataattaaggctcttaaaaaatattttttcaatggaattaatcaaaacaagttaaaaagaaatataactat 21954576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 307
Target Start/End: Original strand, 35121874 - 35122119
Alignment:
Q  64 cctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattca 163  Q
    |||||||||||| ||||||| |  |||  ||||||  |||| |||||||||||||  ||| | |||||||| | ||||||  |||||||| ||| ||| |    
T  35121874 cctaagatttttggtgccctggacgaaacaataaat-tatgcccttttaattattcaaatatttttcttctagcatttttg-ttgcaaaatattcattta 35121971  T
Q  164 taatcaaggttctttaaaaacatattttcaatataattaatcaaagc-aatt---tagaaagaaatatatctatgtagtactaactactacataaaaata 259  Q
    ||||||| ||| | |||||| |||||||||||| ||||||||||||| ||||   || | | | |||||| ||| ||    |||||||||  ||||||||    
T  35121972 taatcaaagttatctaaaaatatattttcaatagaattaatcaaagcgaattaaatatatatatatatatatatatatatataactactaagtaaaaata 35122071  T
Q  260 ataattttggtgcccctaggaaaatggtgccttgggctcccgcccctc 307  Q
    ||||||||||||||||||   ||||||||||||| ||| |||||||||    
T  35122072 ataattttggtgcccctaattaaatggtgccttgtgctgccgcccctc 35122119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 34329777 - 34329893
Alignment:
Q  93 aataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttc 192  Q
    |||||||  ||| |||||||||||||  ||| | |||||||||| ||||||| |||||||||||  ||| |||| ||| ||||| |||||| ||||||||    
T  34329777 aataaaatcatgcccttttaattattctaatatttttcttcttgcattttttgttgcaaaagatctatttataagcaaagttctctaaaaatatattttc 34329876  T
Q  193 aatataattaatcaaag 209  Q
    |||| ||||||||||||    
T  34329877 aatagaattaatcaaag 34329893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 31246258 - 31246352
Alignment:
Q  60 cggtcctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaaga 155  Q
    ||||||||||||||| ||||||||    |||||||||||| | |||| |||||||||||||| ||||||| |||||| ||||||||||||||||||    
T  31246258 cggtcctaagattttaagtgccctgaacgaattaataaaattgtgtcattttaattatttga-tgtctttattcttgcattttttattgcaaaaga 31246352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 64 - 210
Target Start/End: Complemental strand, 33345024 - 33344879
Alignment:
Q  64 cctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattca 163  Q
    |||||||||||| ||||||| |  |||  ||||||  |||| |||||||||||||  ||| | |||||||| | ||||||| |||||||| ||| ||| |    
T  33345024 cctaagatttttggtgccctggacgaaacaataaat-tatgcccttttaattattcaaatatttttcttctagcattttttgttgcaaaatattcattta 33344926  T
Q  164 taatcaaggttctttaaaaacatattttcaatataattaatcaaagc 210  Q
    ||||||| ||| | |||||| |||||||||||| |||||||||||||    
T  33344925 taatcaaagttatctaaaaatatattttcaatagaattaatcaaagc 33344879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 216
Target Start/End: Complemental strand, 11274712 - 11274605
Alignment:
Q  108 ttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaa 207  Q
    |||||| ||||  ||||| ||| |||||||| ||||| |||||||| ||| ||||||||||||  |||| |||||| || || |||||||||||||||||    
T  11274712 ttttaactattccaatgttttttttcttgtactttttgttgcaaaatattcattcataatcaaaattctctaaaaatat-ttgtcaatataattaatcaa 11274614  T
Q  208 agcaattta 216  Q
    |||||||||    
T  11274613 agcaattta 11274605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 31787952 - 31787815
Alignment:
Q  131 ttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatc 230  Q
    |||||| ||||||  |||||||| ||| ||| ||||| || ||| | || ||| |||||||||||| ||||||||||||| | ||| ||| |||||||||    
T  31787952 ttcttgcatttttagttgcaaaatattcatttataattaaagttatctacaaatatattttcaatagaattaatcaaagcgaattaaaaataaatatatc 31787853  T
Q  231 tatgtagtactaactactacataaaaataataattttg 268  Q
    ||  || ||||||||| ||  || ||||||||||||||    
T  31787852 tacttaatactaactattaagtacaaataataattttg 31787815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 33344823 - 33344760
Alignment:
Q  241 taactactacataaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgccc 304  Q
    |||||||||  ||||||||||||||||||||||||||   ||||||||||||||||| ||||||    
T  33344823 taactactaagtaaaaataataattttggtgcccctaattaaatggtgccttgggctgccgccc 33344760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 208
Target Start/End: Original strand, 10903085 - 10903235
Alignment:
Q  58 gccggtcctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagatt 157  Q
    |||||||||||  ||||| ||| |||||  || ||||||||| ||| ||||||| ||||||||||||| |||||||||  |||||| ||||   || |||    
T  10903085 gccggtcctaaattttttggtgtcctagacgagttaataaaattatatccttttgattatttgaatgtttttcttcttacatttttcattgtctaacatt 10903184  T
Q  158 aattcataatcaaggttctttaaaaacatattttcaatataattaatcaaa 208  Q
     ||||| | |||| ||| |||||||  | ||||||||  ||||||||||||    
T  10903185 cattcacattcaaagttatttaaaattacattttcaacttaattaatcaaa 10903235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 35067182 - 35067098
Alignment:
Q  88 gaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaagg 172  Q
    |||| ||||||| |||||  |||||||||||||||| ||||| |||||  ||||||| ||||| |||||| ||||||||| ||||    
T  35067182 gaatcaataaaattatgttattttaattatttgaatatcttttttcttacattttttcttgcataagattcattcataattaagg 35067098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 201
Target Start/End: Complemental strand, 5608173 - 5608079
Alignment:
Q  106 ccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataatt 201  Q
    ||||| ||||||||||||||||||||| || |||||||| || ||||||| | ||||||||||||  |||| || ||| ||||| |||||| ||||    
T  5608173 cctttaaattatttgaatgtctttctttttatattttttgttacaaaaga-tcattcataatcaaaattctctagaaatatattctcaatagaatt 5608079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 32331535 - 32331617
Alignment:
Q  127 tttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaag 209  Q
    ||||||||| |||||||| |||||||||||| ||| ||||  ||| |||| |||||| |||||||||| | ||||||| ||||    
T  32331535 tttcttcttatattttttgttgcaaaagatttatttataaataagattctctaaaaaaatattttcaaaagaattaattaaag 32331617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 34969442 - 34969390
Alignment:
Q  222 aaatatatctatgtagtactaactactacataaaaataataattttggtgccc 274  Q
    |||||||||||| |||||| ||||||||  ||||||||||||||||| |||||    
T  34969442 aaatatatctatatagtaccaactactaagtaaaaataataattttgatgccc 34969390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 9524828 - 9524906
Alignment:
Q  131 ttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagc 210  Q
    ||||||||||||| |||| |||||||| ||| |||||| | |||| ||||||| ||| ||| |||||||||||| |||||    
T  9524828 ttcttgtattttt-attgtaaaagatttatttataatcgaagttcattaaaaatatagttttaatataattaattaaagc 9524906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 4337976 - 4338026
Alignment:
Q  224 atatatctatgtagtactaactactacataaaaataataattttggtgccc 274  Q
    |||||| ||| |||||||||||||||  ||||| |||||||||||||||||    
T  4337976 atatatatatatagtactaactactaagtaaaagtaataattttggtgccc 4338026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 181
Target Start/End: Complemental strand, 21954882 - 21954763
Alignment:
Q  60 cggtcctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaa 159  Q
    |||| |||||||| || ||||||| |  |||| ||||||  ||||||  |||| |||||  || |||||| || ||||||||||| |||||||||| | |    
T  21954882 cggttctaagattgtttgtgccctggacgaatcaataaagttatgtc--tttagttattccaacgtctttttttttgtattttttgttgcaaaagactta 21954785  T
Q  160 ttcataatcaaggttctttaaa 181  Q
    |||||||| |||| ||||||||    
T  21954784 ttcataattaaggctctttaaa 21954763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 134 - 303
Target Start/End: Original strand, 26835589 - 26835758
Alignment:
Q  134 ttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctat 233  Q
    ||||||||||| ||||| |||||| ||| |||||||| ||||| |||||| |||||||||||| ||||||| |||| || ||| |||||||||||| |||    
T  26835589 ttgtattttttgttgcacaagattcatttataatcaaagttctctaaaaatatattttcaatagaattaataaaagaaaattaaaaagaaatatatttat 26835688  T
Q  234 gtagtactaactactacataaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcc 303  Q
     | |||||||||| ||  ||||||||||||||||||||||||||  ||||||||||  |||||| |||||    
T  26835689 attgtactaactattaagtaaaaataataattttggtgcccctaaaaaaatggtgctatgggctgccgcc 26835758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 101 - 288
Target Start/End: Original strand, 13580320 - 13580507
Alignment:
Q  101 tatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataat 200  Q
    ||||| ||||||||||||  ||| | |||  ||||| ||||||| |||||||| ||| ||| |||| ||| ||| |||||||| |||||||||||| |||    
T  13580320 tatgttcttttaattattctaatattttttgtcttgcattttttgttgcaaaatattcatttataaccaaagttatttaaaaatatattttcaatagaat 13580419  T
Q  201 taatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcccctaggaaaatggtg 288  Q
    |||||||||| | ||| |||||||||||| ||| || ||||||||| ||  ||||||||||||||||||||||||||  |||||||||    
T  13580420 taatcaaagcgaattaaaaagaaatatatttatataatactaactattaagtaaaaataataattttggtgcccctaaaaaaatggtg 13580507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 180 - 308
Target Start/End: Complemental strand, 34142112 - 34141984
Alignment:
Q  180 aaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcccctagg 279  Q
    |||| |||||||||||| |||||||||||||   ||| |||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||      
T  34142112 aaaatatattttcaatagaattaatcaaagcggattaaaaagaaatatatctatatagtactaactactaaataaaaataatagttttggtgcccctaac 34142013  T
Q  280 aaaatggtgccttgggctcccgcccctcg 308  Q
    ||| ||||||| |||||| |||| |||||    
T  34142012 aaagtggtgccctgggctgccgctcctcg 34141984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 36042839 - 36042934
Alignment:
Q  112 aattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaa 208  Q
    |||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| ||||||| |||| |||||||||||    
T  36042839 aattatttgaatttctttcttcttgtattttttgttgcaaaaaattaattcataatcaaggttcttt-aaaatatattttaaataaaattaatcaaa 36042934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 41849540 - 41849437
Alignment:
Q  108 ttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaa 207  Q
    ||||||||||||||||||||||||| |||| |||||| ||| |||||||| ||| ||||||||| ||||||||||| |||||||||||| ||||||||||    
T  41849540 ttttaattatttgaatgtctttctttttgt-ttttttgttgaaaaagattcattaataatcaagattctttaaaaatatattttcaatagaattaatcaa 41849442  T
Q  208 agcaa 212  Q
     ||||    
T  41849441 tgcaa 41849437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 231
Target Start/End: Complemental strand, 43872669 - 43872544
Alignment:
Q  106 ccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatc 205  Q
    |||||||||||||  ||| | |||||| ||||||||||| ||||| |||||| ||| |||||||| |||||||||||| |||||| ||||| |||||||     
T  43872669 ccttttaattattctaatatttttctttttgtattttttgttgcacaagattcatttataatcaaagttctttaaaaatatatttacaatagaattaatg 43872570  T
Q  206 aaagcaatttagaaagaaatatatct 231  Q
    ||||||| |||  |||||||||||||    
T  43872569 aaagcaaattaagaagaaatatatct 43872544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 140 - 308
Target Start/End: Original strand, 22486596 - 22486763
Alignment:
Q  140 tttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagta 239  Q
    ||||| ||||| |||||| ||| |||||||| ||||| |||||  |||||||||||| ||||||||||| ||| ||| ||||||| |||||||| | |||    
T  22486596 ttttttttgcacaagattcatttataatcaaagttctctaaaatgatattttcaatagaattaatcaaaacaaattaaaaagaaacatatctattttgta 22486695  T
Q  240 ctaactactacataaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcccctcg 308  Q
     | |||||||  ||| |||||||||||||||  |||||  |||||| |||| |||||| ||||||||||    
T  22486696 gtgactactaagtaagaataataattttggt-accctaaaaaaatgatgccctgggctgccgcccctcg 22486763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 150 - 290
Target Start/End: Complemental strand, 22930439 - 22930299
Alignment:
Q  150 aaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactacta 249  Q
    |||| ||| ||| |||||||| ||| | |||||| || ||||||||| ||||||||||||| | ||| ||||| |||||||||| |||||||||||| ||    
T  22930439 aaaatattcatttataatcaaagttatctaaaaatattttttcaatagaattaatcaaagcgaattaaaaagatatatatctatatagtactaactatta 22930340  T
Q  250 cataaaaataataattttggtgcccctaggaaaatggtgcc 290  Q
      ||||||| |||||||||||||||||   |||||||||||    
T  22930339 agtaaaaattataattttggtgcccctgaaaaaatggtgcc 22930299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 308
Target Start/End: Original strand, 4350692 - 4350840
Alignment:
Q  163 ataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaata---tatctatgtagtactaactactacataaaaata 259  Q
    |||||||| ||| | |||||| |||||||||||| |||||| |||||| | ||| ||| |||||   ||||||| || |||||||||||| |||||||||    
T  4350692 ataatcaaagttatataaaaatatattttcaatagaattaaccaaagcgaattaaaaaaaaataatatatctatataatactaactactaaataaaaata 4350791  T
Q  260 ataattttggtgcccctaggaaaatggtgccttgggctcccgcccctcg 308  Q
    |||||||||||||| |||  ||| |||||||  ||||| ||||||||||    
T  4350792 ataattttggtgcctctaaaaaagtggtgcccagggctaccgcccctcg 4350840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 229
Target Start/End: Complemental strand, 13236379 - 13236221
Alignment:
Q  71 tttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaa 170  Q
    ||||| ||||||| | ||||  ||||||| |||| | |||||||||||  ||| | |||||||||| ||| ||| |||||||| |||  || ||||||||    
T  13236379 tttttggtgccctggatgaaacaataaaattatgccattttaattattccaatatttttcttcttgcattatttgttgcaaaaaattcgtttataatcaa 13236280  T
Q  171 ggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatat 229  Q
     ||||| |||||| ||||||||| || ||||||||||||| | ||| ||||||||||||    
T  13236279 agttctctaaaaatatattttcattagaattaatcaaagcgaattaaaaagaaatatat 13236221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 114 - 261
Target Start/End: Original strand, 35480977 - 35481124
Alignment:
Q  114 ttatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacat-attttcaatataattaatcaaagcaa 212  Q
    ||||| |||| | |||||||||||||||||| ||||||||||||  || |||||||| ||||| |||||| || |||||||||| ||||| | |||||      
T  35480977 ttattcgaatatttttcttcttgtattttttgttgcaaaagatttttttataatcaatgttctctaaaaatatcattttcaatagaattattgaaagcgg 35481076  T
Q  213 tttagaaagaaatatatctatgtagtactaactactacataaaaataat 261  Q
     |||  ||||||| ||||||| ||||||||||||| || ||||||||||    
T  35481077 gttaataagaaatttatctatatagtactaactaccac-taaaaataat 35481124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 85 - 267
Target Start/End: Complemental strand, 7255585 - 7255401
Alignment:
Q  85 ggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtatttt-ttattgcaaaagattaattcataatcaaggttctttaaaaa 183  Q
    ||||||| |||||| || ||||||||||||||| | ||||||||||||||||| |||| || ||| |||| ||| ||| |||||| | ||||| ||||||    
T  7255585 ggtgaatcaataaagctttgtccttttaattatataaatgtctttcttcttgttttttctttttgtaaaatattcatttataatc-atgttctctaaaaa 7255487  T
Q  184 catattttcaatataattaatcaaagcaattt--agaaagaaatatatctatgtagtactaactactacataaaaataataatttt 267  Q
    |||||||||||||  || ||  ||||||||||  | ||| ||| |||| ||| || ||||||| ||||  |||||||| |||||||    
T  7255486 catattttcaataatatcaactaaagcaatttaaaaaaaaaaacatatttatataatactaaccactaagtaaaaatattaatttt 7255401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 131 - 267
Target Start/End: Complemental strand, 12181956 - 12181824
Alignment:
Q  131 ttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatc 230  Q
    |||||||| ||||| |||||||| ||| ||||||||||||  |||| |||||| || || |||||||||||| ||||||||||||   || |||||| ||    
T  12181956 ttcttgtactttttgttgcaaaatattcattcataatcaaaattctctaaaaatat-ttgtcaatataattagtcaaagcaattt---aataaatatttc 12181861  T
Q  231 tatgtagtactaactactacataaaaataataatttt 267  Q
    ||| || |||||| |||||  ||||||||||||||||    
T  12181860 tatataatactaattactaagtaaaaataataatttt 12181824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 131 - 267
Target Start/End: Complemental strand, 12426384 - 12426252
Alignment:
Q  131 ttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatc 230  Q
    |||||||| ||||| |||||||| ||| ||||||||||||  |||| |||||| || || |||||||||||| ||||||||||||   || |||||| ||    
T  12426384 ttcttgtactttttgttgcaaaatattcattcataatcaaaattctctaaaaatat-ttgtcaatataattagtcaaagcaattt---aataaatatttc 12426289  T
Q  231 tatgtagtactaactactacataaaaataataatttt 267  Q
    ||| || |||||| |||||  ||||||||||||||||    
T  12426288 tatataatactaattactaagtaaaaataataatttt 12426252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 108 - 209
Target Start/End: Complemental strand, 31278049 - 31277947
Alignment:
Q  108 ttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaa-acatattttcaatataattaatca 206  Q
    |||| |||||| |||| |||||||||||| ||||||   ||||||||||| ||| |||||||||||||| ||||| | |||||||||||| |||||||||    
T  31278049 tttttattattcgaatctctttcttcttgaatttttaggtgcaaaagattcatttataatcaaggttctctaaaataaatattttcaatagaattaatca 31277950  T
Q  207 aag 209  Q
    |||    
T  31277949 aag 31277947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 273
Target Start/End: Complemental strand, 28376725 - 28376652
Alignment:
Q  200 ttaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcc 273  Q
    ||||||||| | | ||| |||||||||||||||| |||||||||||||||  ||||||||||||||||||||||    
T  28376725 ttaatcaaaacgaattaaaaagaaatatatctatatagtactaactactaagtaaaaataataattttggtgcc 28376652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 18987181 - 18987265
Alignment:
Q  149 caaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctat 233  Q
    |||||||||||||||| ||||| ||||| |||||| ||| ||||||||||||||||||||   | ||| ||||||||||||||||    
T  18987181 caaaagattaattcattatcaaagttctctaaaaatataatttcaatataattaatcaaacataattacaaagaaatatatctat 18987265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 9053039 - 9052935
Alignment:
Q  105 tccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaat 204  Q
    ||||||||||||||| ||||| |||||| |   ||||||| ||| |||||| | |||||||||||||||||| |||| | |||||||||||| |||||||    
T  9053039 tccttttaattatttaaatgtatttcttttcacattttttgttgtaaaagaatcattcataatcaaggttctctaaatatatattttcaata-aattaat 9052941  T
Q  205 caaagc 210  Q
     |||||    
T  9052940 taaagc 9052935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 65 - 194
Target Start/End: Complemental strand, 24606974 - 24606846
Alignment:
Q  65 ctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcat 164  Q
    ||||||||||| ||| | |||| |||| || |||  | |||||||||| |||||| |||||||||||||||  |||||||  ||||||||||| ||| ||    
T  24606974 ctaagatttttggtgtcttaggcgaatcaacaaagttgtgtccttttagttatttaaatgtctttcttcttacattttttgctgcaaaagattcatttat 24606875  T
Q  165 aatcaaggttctttaaaaacatattttcaa 194  Q
    ||  || |||||||||||| ||||||||||    
T  24606874 aaataaagttctttaaaaa-atattttcaa 24606846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 21347499 - 21347574
Alignment:
Q  134 ttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaag 209  Q
    |||||||||| |||||| |||||| ||| ||||||||  || |||||||| |||||||||||| ||||||||||||    
T  21347499 ttgtatttttgattgcacaagattcatttataatcaaatttatttaaaaatatattttcaatagaattaatcaaag 21347574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 26802013 - 26801911
Alignment:
Q  106 ccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatc 205  Q
    |||||||||||||||||||| |||||| ||  ||||||| ||||||| || |  || |||||||| ||||| ||| || ||| |||||||||||||||||    
T  26802013 ccttttaattatttgaatgtttttcttattaaattttttgttgcaaaggactcgtttataatcaatgttctctaataatata-tttcaatataattaatc 26801915  T
Q  206 aaag 209  Q
    ||||    
T  26801914 aaag 26801911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 131 - 288
Target Start/End: Complemental strand, 9191331 - 9191180
Alignment:
Q  131 ttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatc 230  Q
    |||||| ||| ||| ||| |||||||| ||| |||||||  ||||| |||||| ||||||| |||| ||||||||||||  | ||| ||| |||||||||    
T  9191331 ttcttgcattatttgttgtaaaagattcatttataatcatagttctctaaaaatatattttgaatagaattaatcaaagtgaattaaaaataaatatatc 9191232  T
Q  231 tatgtagtactaactactacataaaaataataattttggtgcccctaggaaaatggtg 288  Q
    |||       |||||||||  ||||||||||||||||| ||| ||||  |||||||||    
T  9191231 tat------ataactactaagtaaaaataataattttgatgctcctaaaaaaatggtg 9191180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 32349620 - 32349535
Alignment:
Q  125 tctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaa-acatattttcaatataattaatcaaag 209  Q
    |||||||||||| |||| | | ||||||||||| || ||||||||| ||||| ||||| | |||||||||||| ||||||||||||    
T  32349620 tctttcttcttgaatttgtaagtgcaaaagattcatccataatcaatgttctctaaaagaaatattttcaatagaattaatcaaag 32349535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 32366281 - 32366196
Alignment:
Q  125 tctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaa-acatattttcaatataattaatcaaag 209  Q
    |||||||||||| |||| | | ||||||||||| || ||||||||| ||||| ||||| | |||||||||||| ||||||||||||    
T  32366281 tctttcttcttgaatttgtaagtgcaaaagattcatccataatcaatgttctctaaaagaaatattttcaatagaattaatcaaag 32366196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 274
Target Start/End: Complemental strand, 31383607 - 31383468
Alignment:
Q  135 tgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatg 234  Q
    |||||||||  |||||||||||| ||||||| |||| |||   ||||| ||||||||||||| ||||||| |||| || ||| ||| || ||||  |||     
T  31383607 tgtatttttcgttgcaaaagattcattcatattcaaagttagctaaaaccatattttcaataaaattaattaaaggaaattaaaaataattatacttata 31383508  T
Q  235 tagtactaactactacataaaaataataattttggtgccc 274  Q
    || || |||||| ||   |||||||||||||||| |||||    
T  31383507 taatattaactattaagaaaaaataataattttgatgccc 31383468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 17786508 - 17786598
Alignment:
Q  139 ttttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatat 229  Q
    |||||| |||||||| ||| ||||||||||||  ||||  ||||| | ||||| ||||| |||||||||||| | ||| ||||||||||||    
T  17786508 ttttttgttgcaaaatatttattcataatcaaaattctacaaaaatagatttttaatatgattaatcaaagcgagttaaaaagaaatatat 17786598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 267
Target Start/End: Original strand, 32646581 - 32646705
Alignment:
Q  141 ttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaa-gcaatttagaaagaaatatatctatgtagta 239  Q
    ||||||||||| ||||| ||| ||||| ||| ||||||||||| ||||||| |||| ||||||| ||| | ||||   ||| ||||| |||||  || ||    
T  32646581 ttttattgcaagagattcatttataattaagattctttaaaaatatatttttaataaaattaattaaaagtaatt---aaaaaaatacatctacataata 32646677  T
Q  240 ctaactactacataaaaataataatttt 267  Q
    || ||||||  |||||||||||||||||    
T  32646678 ctcactactgaataaaaataataatttt 32646705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 39295473 - 39295575
Alignment:
Q  106 ccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatc 205  Q
    ||||||||||||| |||||| ||||||| |||| ||||| |||||||| ||  |||  |||| |||||| | ||||||  ||||||||||| ||| ||||    
T  39295473 ccttttaattattcgaatgtgtttcttcatgtaatttttgttgcaaaaaatccatttgtaat-aaggttttctaaaaatgtattttcaatagaatcaatc 39295571  T
Q  206 aaag 209  Q
    ||||    
T  39295572 aaag 39295575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 21348507 - 21348561
Alignment:
Q  252 taaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcccct 306  Q
    ||||||||| |||||| |||||||||  ||||||||||| |||||| ||||||||    
T  21348507 taaaaataagaattttagtgcccctacaaaaatggtgccctgggctgccgcccct 21348561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 127 - 307
Target Start/End: Complemental strand, 1240572 - 1240388
Alignment:
Q  127 tttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaaca----tattttcaatataattaatcaaagcaatttagaaaga 222  Q
    |||||||||| ||||||| |||||||||||| ||| |||||| | ||||| |||||| |    ||||||||||| |||||||||||||   ||| |||||    
T  1240572 tttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaaaaatatattttcaatagaattaatcaaagcggattaaaaaga 1240473  T
Q  223 aatatatctatgtagtactaactactacataaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcccctc 307  Q
    ||||||| ||| |||||||||||||||  |||||||||||||||| |||||||||  ||||||||| | |||||| |||||||||    
T  1240472 aatatatttatatagtactaactactaagtaaaaataataattttagtgcccctaaaaaaatggtgtcctgggctgccgcccctc 1240388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 108 - 275
Target Start/End: Original strand, 1153694 - 1153860
Alignment:
Q  108 ttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaa 207  Q
    ||||||||||  |||| ||||||||||||  |||||| |||||||||||||||| | |||||| ||||| | |||||||||||| |||| ||||||| ||    
T  1153694 ttttaattatccgaatatctttcttcttgcgttttttgttgcaaaagattaattgaaaatcaaagttctcttaaaacatatttttaatagaattaattaa 1153793  T
Q  208 agcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcccc 275  Q
    ||  | ||| ||| ||||||| |||| || |||||||||||| ||||||||||||||| |||||||||    
T  1153794 ag-gagttaaaaacaaatataactatttaatactaactactaaataaaaataataattgtggtgcccc 1153860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 108 - 290
Target Start/End: Original strand, 3265435 - 3265616
Alignment:
Q  108 ttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaa 207  Q
    ||||||||||| |||||||||||||| || ||||||| |||||||||||| ||| ||||| || ||||| | ||||||||||||||  | ||||| ||||    
T  3265435 ttttaattattcgaatgtctttcttcgtgcattttttgttgcaaaagattcattgataataaaagttctcttaaaacatattttcataagaatta-tcaa 3265533  T
Q  208 agcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcccctaggaaaatggtgcc 290  Q
    ||  | ||| |||||||||||||||| || ||||||||| ||  ||||||||||||||||||| ||| |   |||||||||||    
T  3265534 agggagttaaaaagaaatatatctatttaatactaactattaagtaaaaataataattttggttccctttataaaatggtgcc 3265616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 138 - 305
Target Start/End: Original strand, 10976117 - 10976282
Alignment:
Q  138 attttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtag 237  Q
    ||||||||||| |||||||| ||| |||||||| ||| | |||||| ||||||||||||||||  || ||||||| ||| |||  ||||||| ||| |||    
T  10976117 attttttattgtaaaagatttatttataatcaaagttttataaaaatatattttcaatataatcgatgaaagcaaattaaaaa--aatatatttatatag 10976214  T
Q  238 tactaactactacataaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcccc 305  Q
     |||||| |||| |||||| ||||||||||| ||||||||  ||||||||||||||| || |||||||    
T  10976215 cactaaccactaaataaaactaataattttgatgcccctaaaaaaatggtgccttggactgccgcccc 10976282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 139 - 274
Target Start/End: Original strand, 33735750 - 33735885
Alignment:
Q  139 ttttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagt 238  Q
    |||||| | |||||||||| ||| |||||||| ||| | |||||| |||||||||||||||||||||||| ||| ||| |||||||||||| |||  | |    
T  33735750 ttttttttggcaaaagattcatttataatcaaagttgtctaaaaatatattttcaatataattaatcaaaccaaattaaaaagaaatatatttatacaat 33735849  T
Q  239 actaactactacataaaaataataattttggtgccc 274  Q
    ||||||||||| |||||| |||||||||| ||||||    
T  33735850 actaactactagataaaattaataattttagtgccc 33735885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 179 - 273
Target Start/End: Original strand, 8246760 - 8246854
Alignment:
Q  179 aaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcc 273  Q
    ||||| |||||||||||| ||||||||||| ||| ||| |||||||||||||||| |||||||||||| ||  ||||||||||||||||||||||    
T  8246760 aaaaatatattttcaatagaattaatcaaatcaaattaaaaagaaatatatctatatagtactaactattaagtaaaaataataattttggtgcc 8246854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 108 - 268
Target Start/End: Original strand, 35204188 - 35204344
Alignment:
Q  108 ttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaa 207  Q
    |||||||||||  ||||| ||| |||||||| |||||||||||||| ||| ||||||||||||  |||| |||||| || || |||||||||||||||||    
T  35204188 ttttaattattccaatgttttttttcttgtactttttattgcaaaatattcattcataatcaaaattctctaaaaatat-ttgtcaatataattaatcaa 35204286  T
Q  208 agcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttg 268  Q
    ||||||||   || |||||| | ||| || |||||| |||||  |||||||||||||||||    
T  35204287 agcaattt---aaaaaatatttttatataatactaattactaagtaaaaataataattttg 35204344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 242
Target Start/End: Original strand, 15102968 - 15103150
Alignment:
Q  56 gggccggtcctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaaga 155  Q
    |||||||||||||| ||||| ||||| |||| |||  ||||||| | ||| ||||||||||||| ||    | | |||||||||||||| ||||| ||||    
T  15102968 gggccggtcctaagttttttggtgccataggcgaaacaataaaattgtgttcttttaattatttcaa----tattttcttgtattttttgttgcacaaga 15103063  T
Q  156 ttaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtacta 242  Q
    || ||| |||||||| ||||| |||||| ||   ||||||| ||||||||||| |||  || |||||||||||||||| ||||||||    
T  15103064 ttcatttataatcaaagttctctaaaaatattacttcaatagaattaatcaaaacaaagtaaaaagaaatatatctatatagtacta 15103150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 38742559 - 38742453
Alignment:
Q  103 tgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataatta 202  Q
    |||||||||||| |||||||||||||| | | || ||||||| ||| ||||||||||||||||||||| ||||| |||||| |||||||||||| |  ||    
T  38742559 tgtccttttaatgatttgaatgtctttttccctgcatttttttttgtaaaagattaattcataatcaaagttctctaaaaatatattttcaatagatata 38742460  T
Q  203 atcaaag 209  Q
    |||||||    
T  38742459 atcaaag 38742453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 139 - 317
Target Start/End: Original strand, 23897902 - 23898073
Alignment:
Q  139 ttttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagt 238  Q
    |||||| |||||||| ||| ||| |||||||| ||| | |||||| || |||| |||| ||||||||||||||| ||| |||| ||||||| |      |    
T  23897902 ttttttgttgcaaaatattcatttataatcaaagttatctaaaaatat-ttttaaatagaattaatcaaagcaaattaaaaaggaatatatat------t 23897994  T
Q  239 actaactactacataaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcccctcgaggccaccc 317  Q
    |||||||||||  ||||||| ||||||||||||||||||  |||||||| || |||||| ||||||||| || ||||||    
T  23897995 actaactactaagtaaaaatgataattttggtgcccctaaaaaaatggttccctgggctgccgcccctcaagcccaccc 23898073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 4626523 - 4626601
Alignment:
Q  132 tcttgtattttttattgcaaaagat-taattcataatcaaggttctttaaaaacatattttcaatataattaatcaaag 209  Q
    ||||||||||||||||||||||||| | ||||||||| |||||| |||||||| |||||||||||| ||||||||||||    
T  4626523 tcttgtattttttattgcaaaagatctcattcataattaaggttttttaaaaatatattttcaatagaattaatcaaag 4626601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 229
Target Start/End: Complemental strand, 35405498 - 35405375
Alignment:
Q  106 ccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatc 205  Q
    |||||||||||||  ||| | |||||||||| ||||||| |||||||| ||| |||  ||||||| ||| | |||||| || |||| |||||||||||||    
T  35405498 ccttttaattattcaaatatttttcttcttgcattttttgttgcaaaatattcatttctaatcaaagttatctaaaaatattttttaaatataattaatc 35405399  T
Q  206 aaagcaatttagaaagaaatatat 229  Q
    ||||| | ||| ||||||||||||    
T  35405398 aaagcgaattaaaaagaaatatat 35405375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 268
Target Start/End: Original strand, 45385222 - 45385365
Alignment:
Q  127 tttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaata----taattaatcaaagcaatttagaaaga 222  Q
    |||| ||||||||||||| |||||||||||| ||| | |||||||||||| |  ||||||||| ||||||    | |||||| ||||  | ||| |||||    
T  45385222 tttcctcttgtattttttgttgcaaaagattcattgaaaatcaaggttctct--aaacatattatcaatagtatttattaattaaagggagttaaaaaga 45385319  T
Q  223 aatatatctatgtagtactaactactacataaaaataataattttg 268  Q
    |||||||| || || ||| |||||||| ||||||||||||||||||    
T  45385320 aatatatccatttaatacaaactactaaataaaaataataattttg 45385365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 317
Target Start/End: Original strand, 34298927 - 34299133
Alignment:
Q  114 ttatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaat 213  Q
    ||||| ||| ||||||||||||   ||||||  || |||||||| |||||||||||| |||||||||||| |||| ||||||| ||||||  | | |||     
T  34298927 ttattcgaacgtctttcttcttacgttttttgctggaaaagatttattcataatcaa-gttctttaaaaatatatgttcaatagaattaagtacaacaag 34299025  T
Q  214 ttagaaagaaata----tatctatgtagtactaactactacataaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcccctcga 309  Q
    ||| ||| |||||    ||||||| | ||| |||||||||   |||||||| |||||| |||||| ||  | ||||||| | |||||| |||||||||||    
T  34299026 ttaaaaaaaaatatatttatctatatcgtattaactactaaggaaaaataacaattttagtgcccttaaaagaatggtgtcctgggctgccgcccctcga 34299125  T
Q  310 ggccaccc 317  Q
    | ||||||    
T  34299126 gcccaccc 34299133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 22667162 - 22667261
Alignment:
Q  106 ccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatc 205  Q
    |||||||||||||  ||| | |||||||||| |||||||||||||||| ||| ||| |||||||| ||| |  ||||| | |||||||||| ||||||||    
T  22667162 ccttttaattattcaaatatttttcttcttgcattttttattgcaaaatattcatttataatcaaagttatccaaaaataaattttcaatagaattaatc 22667261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 316
Target Start/End: Complemental strand, 23935299 - 23935140
Alignment:
Q  150 aaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactacta 249  Q
    |||| ||| ||| |||||||| ||| | |||||| || |||| |||| ||||||||||||||  ||| |||||||||||| |      ||||||||||||    
T  23935299 aaaatattcatttataatcaaagttatctaaaaatat-ttttaaatagaattaatcaaagcagattaaaaagaaatatatat------tactaactacta 23935207  T
Q  250 cataaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcccctcgaggccacc 316  Q
      |||||||  ||||||||||| |||||  ||||||||||| |||||| ||||||||| || |||||    
T  23935206 agtaaaaatgttaattttggtgaccctaaaaaaatggtgccctgggctgccgcccctcaagcccacc 23935140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 20756837 - 20756780
Alignment:
Q  105 tccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattc 162  Q
    |||||||| ||||| ||||||||||||| ||||||| |||||||||||||||| ||||    
T  20756837 tccttttacttattcgaatgtctttcttattgtattctttattgcaaaagattcattc 20756780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 30718241 - 30718168
Alignment:
Q  108 ttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaa 181  Q
    |||||||||||||||||||||||||||| ||||||||  |  |||| ||| ||||||||||| |||||| ||||    
T  30718241 ttttaattatttgaatgtctttcttcttatatttttttgttgaaaaaattcattcataatcatggttctctaaa 30718168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 49762405 - 49762520
Alignment:
Q  93 aataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttc 192  Q
    ||||||| | |||| |||||||||||  ||| | ||||||||| |||||||| || || || | | ||| |||||||| ||||| |||||| ||||||||    
T  49762405 aataaaattgtgtctttttaattattctaatat-tttcttcttatattttttgttacacaaaactcatttataatcaaagttctctaaaaatatattttc 49762503  T
Q  193 aatataattaatcaaag 209  Q
    |||| ||||||||||||    
T  49762504 aatagaattaatcaaag 49762520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 35405339 - 35405285
Alignment:
Q  252 taaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcccctc 307  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||| |||||||||    
T  35405339 taaaaataataattttggtgccccta-aaaaatggtgccctgggctgccgcccctc 35405285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 40863 - 40933
Alignment:
Q  235 tagtactaactactacataaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcccc 305  Q
    ||||| ||||||| |  ||||||||||||||||||||||||||  ||||||||| |||||||  |||||||    
T  40863 tagtattaactacaaagtaaaaataataattttggtgcccctaataaaatggtgtcttgggcggccgcccc 40933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 29062354 - 29062432
Alignment:
Q  127 tttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatc 205  Q
    |||||||||||||||||| |||||||||||| ||| ||||| || ||||| ||| || ||||||| |||  ||||||||    
T  29062354 tttcttcttgtattttttgttgcaaaagatttatttataataaaagttctctaacaatatattttaaattgaattaatc 29062432  T

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Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 288
Target Start/End: Complemental strand, 29664261 - 29664171
Alignment:
Q  198 aattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcccctaggaaaatggtg 288  Q
    ||||||||||| | | ||| ||||||||||| |||| ||||||||| |||||  |||||||||||||||| ||  |||||  |||||||||    
T  29664261 aattaatcaaaacgaattaaaaagaaatatacctatatagtactaattactaagtaaaaataataattttagtatccctaaaaaaatggtg 29664171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 22667683 - 22667747
Alignment:
Q  243 actactacataaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcccctc 307  Q
    ||||||| ||||||||||||||||| |||||||||   |||||||||| | |||| |||||||||    
T  22667683 actactaaataaaaataataatttttgtgcccctaaataaatggtgccctaggctgccgcccctc 22667747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 26321659 - 26321702
Alignment:
Q  56 gggccggtcctaagatttttagtgccctaggtgaattaataaaa 99  Q
    |||||||||||||||||||| ||||| |||||||| ||||||||    
T  26321659 gggccggtcctaagatttttggtgccttaggtgaaataataaaa 26321702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 42783997 - 42783946
Alignment:
Q  158 aattcataatcaaggttctttaaaaacatattttcaatataattaatcaaag 209  Q
    |||||||||| ||| || |||||||||||||||| |||| ||||||||||||    
T  42783997 aattcataattaagattttttaaaaacatatttttaatagaattaatcaaag 42783946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 44807440 - 44807381
Alignment:
Q  150 aaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaag 209  Q
    |||||||| ||||||||||||  ||||| ||| | ||||| |||||||||||||||||||    
T  44807440 aaaagatttattcataatcaatattcttgaaatatatattatcaatataattaatcaaag 44807381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 45012809 - 45012878
Alignment:
Q  140 tttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaag 209  Q
    ||||| ||| |||||||| ||||||||||||| | ||  ||||| | |||||||||| ||||||||||||    
T  45012809 tttttgttgtaaaagattcattcataatcaagatactcgaaaaataaattttcaatagaattaatcaaag 45012878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 268
Target Start/End: Original strand, 16141557 - 16141645
Alignment:
Q  180 aaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttg 268  Q
    |||| ||||||||| || |||| ||||||| || ||| ||| |||||| | ||| || |||||||||||| |||| |||||||| ||||    
T  16141557 aaaatatattttcattagaattgatcaaagaaagttaaaaacaaatatttatatataatactaactactaaataacaataataaatttg 16141645  T

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Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 138 - 268
Target Start/End: Original strand, 33510096 - 33510226
Alignment:
Q  138 attttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtag 237  Q
    ||||||| |||||||||||| ||| ||||| || ||||| |||||| |||||||||||  ||||||||||| | | ||| ||||||||||||||||||||    
T  33510096 attttttgttgcaaaagattcatttataattaaagttctctaaaaatatattttcaatggaattaatcaaaacgaattaaaaagaaatatatctatgtag 33510195  T
Q  238 tactaactactacataaaaataataattttg 268  Q
     |||||||||||  |||||||||||||||||    
T  33510196 cactaactactaagtaaaaataataattttg 33510226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 131 - 267
Target Start/End: Complemental strand, 15671055 - 15670919
Alignment:
Q  131 ttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatc 230  Q
    ||||||||| |||| ||||| |||||| ||| |||||||| ||| | |||||| |||||||||||| ||||||||||| ||| ||| |||||||||||||    
T  15671055 ttcttgtatattttgttgcacaagattcatttataatcaaagttttctaaaaagatattttcaatagaattaatcaaaacaaattaaaaagaaatatatc 15670956  T
Q  231 tatgtagtactaactactacataaaaataataatttt 267  Q
    ||| | ||| |||||||||  ||||||||||||||||    
T  15670955 tatattgtaataactactaagtaaaaataataatttt 15670919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 246
Target Start/End: Original strand, 33682629 - 33682769
Alignment:
Q  106 ccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatc 205  Q
    |||||||||| || ||||||||||||||| | |||| || || |||||||||  || ||| ||||||||||||||||| ||||||| |||| ||||||||    
T  33682629 ccttttaatttttcgaatgtctttcttctagcatttgttgttacaaaagattcctttatagtcaaggttctttaaaaaaatatttttaatagaattaatc 33682728  T
Q  206 aaagcaatttagaaagaaatatatctatgtagtactaacta 246  Q
    ||||  | ||| |||||||||||||||| ||||||||||||    
T  33682729 aaagtgaattaaaaagaaatatatctatctagtactaacta 33682769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 273
Target Start/End: Original strand, 8266560 - 8266729
Alignment:
Q  105 tccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatata-attaa 203  Q
    ||||||||||||||| ||||||| |||| ||||||||||| ||| ||||| || ||| |||||||||||||| | |||||||||||||| || |  ||||    
T  8266560 tccttttaattatttaaatgtctctctttttgtattttttgttgtaaaaggttcattaataatcaaggttctctgaaaacatattttcagtagagtttaa 8266659  T
Q  204 tcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcc 273  Q
    |||||   | ||| ||  ||||||| |||| || ||||||||| ||| ||||||| ||||||||||||||    
T  8266660 tcaaacagagttaaaagaaaatatacctatataatactaactattacgtaaaaatcataattttggtgcc 8266729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 107 - 273
Target Start/End: Complemental strand, 2758238 - 2758070
Alignment:
Q  107 cttttaattatttgaatgtctttcttcttgtattttttattgc--aaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaat 204  Q
    ||||||||||||||||||| |||||| |  | |||||| ||    |||||||| |||||||| ||||||| | |||||| |||| |||| || || ||||    
T  2758238 cttttaattatttgaatgtttttcttgtatttttttttctttttaaaaagattcattcataaccaaggttatgtaaaaatatatattcattagaaataat 2758139  T
Q  205 caaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcc 273  Q
    |||| | | ||| |||||||||| | ||| |||||||||||||||  ||||||||||||||||||||||    
T  2758138 caaaactagttaaaaagaaatatgtttatatagtactaactactaattaaaaataataattttggtgcc 2758070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 149 - 268
Target Start/End: Original strand, 54417032 - 54417151
Alignment:
Q  149 caaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactact 248  Q
    ||||||||| ||| ||||||||  ||||||||||||||||||||| || ||||||||||||  | ||| || ||||| ||||||| ||| |||||||||     
T  54417032 caaaagattcatttataatcaaaattctttaaaaacatattttcagtagaattaatcaaagtgaattaaaaggaaatgtatctatatagcactaactacc 54417131  T
Q  249 acataaaaataataattttg 268  Q
    |  |||||||||||||||||    
T  54417132 aagtaaaaataataattttg 54417151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 271
Target Start/End: Complemental strand, 39838626 - 39838466
Alignment:
Q  108 ttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatc-aaggttctttaaaaacatattttcaatataattaatca 206  Q
    ||||||||| | |||| || || || |||||| |||| |||||||||||| |||||||||| ||||||||||||||  ||||||||||||||||||||||    
T  39838626 ttttaattagtcgaatatcattattattgtatcttttgttgcaaaagattcattcataatcaaaggttctttaaaa--atattttcaatataattaatca 39838529  T
Q  207 aagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtg 271  Q
     |   | ||| |||||||||||| |||  ||||||||||| ||  |||||  |||||||||||||    
T  39838528 taatgagttaaaaagaaatatatttatacagtactaactagtaattaaaa--aataattttggtg 39838466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 272
Target Start/End: Original strand, 168656 - 168816
Alignment:
Q  109 tttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaa 208  Q
    ||||||||||  ||| |||||||| ||| ||||||| || ||||||||| |||||||||||||||||| | |||| |||||||||||| ||||||||| |    
T  168656 tttaattattctaatttctttcttgttgcattttttgttacaaaagattcattcataatcaaggttctct-aaaatatattttcaatagaattaatcaca 168754  T
Q  209 gcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgc 272  Q
    || | ||| |||  ||||||| ||| |||| || ||||||| |  |||||||||||| ||||||    
T  168755 gcgagtta-aaaataatatatttatatagtgctgactacta-agtaaaataataattatggtgc 168816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 274
Target Start/End: Complemental strand, 11383723 - 11383585
Alignment:
Q  138 attttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaattta--gaaagaaatatatctatgt 235  Q
    ||||||| |||||||| ||| ||| |||||||| ||| | |||||| || ||||||||  ||||||||||||| | |||  || | | |||||| ||| |    
T  11383723 attttttgttgcaaaatattcatttataatcaaagttatctaaaaatattttttcaattgaattaatcaaagcgaattaaagatatatatatatatatat 11383624  T
Q  236 agtactaactactacataaaaataataattttggtgccc 274  Q
    | |||||||||||| ||||||||||||||||||||||||    
T  11383623 attactaactactaaataaaaataataattttggtgccc 11383585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 17713409 - 17713276
Alignment:
Q  131 ttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatc 230  Q
    |||||||| ||||| |||||||| ||| ||||||||||||  |||| |||||| || || |||||||||||||||||||||||||   || |||||| ||    
T  17713409 ttcttgtactttttcttgcaaaatattcattcataatcaaaattctctaaaaatat-ttgtcaatataattaatcaaagcaattt---aaaaaatatttc 17713314  T
Q  231 tatgtagtactaactactacataaaaataataattttg 268  Q
    ||| ||  ||||| |||||  |||||||||||||||||    
T  17713313 tatataaaactaattactaagtaaaaataataattttg 17713276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 19014638 - 19014505
Alignment:
Q  131 ttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatc 230  Q
    |||||||| ||||| |||||||| ||| ||||||||||||  |||| |||||| || || |||||||||||||||||||||||||   || |||||| ||    
T  19014638 ttcttgtactttttcttgcaaaatattcattcataatcaaaattctctaaaaatat-ttgtcaatataattaatcaaagcaattt---aaaaaatatttc 19014543  T
Q  231 tatgtagtactaactactacataaaaataataattttg 268  Q
    ||| ||  ||||| |||||  |||||||||||||||||    
T  19014542 tatataaaactaattactaagtaaaaataataattttg 19014505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 131 - 233
Target Start/End: Original strand, 27538777 - 27538879
Alignment:
Q  131 ttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatc 230  Q
    |||||||||||||| |||||||| ||| |||  ||||||| ||| |||||||| |||||||||||| ||||||||||||  | ||| ||| |||||||||    
T  27538777 ttcttgtattttttgttgcaaaatattcatttctaatcaaagttatttaaaaatatattttcaatagaattaatcaaagagaattaaaaataaatatatc 27538876  T
Q  231 tat 233  Q
    |||    
T  27538877 tat 27538879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 11365210 - 11365105
Alignment:
Q  105 tccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaat 204  Q
    ||||||||||||||  ||| | |||||||||| ||||||| |||||||| ||| ||| |||||||| ||| |||||||| || ||||||||  |||||||    
T  11365210 tccttttaattattcaaatatttttcttcttgcattttttgttgcaaaatattcatttataatcaaagttatttaaaaatatcttttcaattgaattaat 11365111  T
Q  205 caaagc 210  Q
    ||||||    
T  11365110 caaagc 11365105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 274
Target Start/End: Original strand, 19149848 - 19149985
Alignment:
Q  131 ttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatc 230  Q
    |||||| ||||||||||| |||||||| ||| ||||||||   |||    ||| |||||||| ||||||||||||||||| | ||| ||||||||||||     
T  19149848 ttcttgcattttttattgtaaaagatttatttataatcaac--tct----aaatatattttcgatataattaatcaaagcgaattaaaaagaaatatatt 19149941  T
Q  231 tatgtagtactaactactacataaaaataataattttggtgccc 274  Q
    |||  | || |||||| || |||||||||| ||||||| |||||    
T  19149942 tataaattattaactattaaataaaaataaaaattttgatgccc 19149985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 46744076 - 46744007
Alignment:
Q  139 ttttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaa 208  Q
    |||||| |||||||||||| ||||||||| ||||||||  ||||| ||||||| |||| |||||||||||    
T  46744076 tttttttttgcaaaagattcattcataattaaggttctacaaaaatatatttttaatagaattaatcaaa 46744007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 47000833 - 47000936
Alignment:
Q  106 ccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatc 205  Q
    ||||||||| |||| ||| | ||||||||| |||||||| |||||||| ||| ||| ||||||||  || | |||||| || ||||||||| ||||||||    
T  47000833 ccttttaatcatttaaatatttttcttcttatattttttgttgcaaaatattcatttataatcaaaattatctaaaaatat-ttttcaatagaattaatc 47000931  T
Q  206 aaagc 210  Q
    |||||    
T  47000932 aaagc 47000936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 27541151 - 27541206
Alignment:
Q  222 aaatatatctatgtagtactaactactacataaaaataataattttggtgccccta 277  Q
    |||||||||||| || |||||| ||||| |||||||||||||||||| ||||||||    
T  27541151 aaatatatctatatattactaattactaaataaaaataataattttgatgccccta 27541206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 212
Target Start/End: Complemental strand, 33290865 - 33290755
Alignment:
Q  101 tatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataat 200  Q
    |||||| |||||||||||| ||| | ||||| ||||  |||||| ||||| |||||| ||| || ||||| ||||| |||||| |||  ||||||| |||    
T  33290865 tatgtctttttaattatttcaatatttttctccttgcgttttttgttgcacaagattcatttatgatcaaagttctctaaaaatata-attcaataaaat 33290767  T
Q  201 taatcaaagcaa 212  Q
    ||||||||||||    
T  33290766 taatcaaagcaa 33290755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 52706724 - 52706790
Alignment:
Q  202 aatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttg 268  Q
    ||||||||||| ||| |||||||||||||||| | |||   ||||||| ||||||||||||||||||    
T  52706724 aatcaaagcaaattaaaaagaaatatatctatattgtaaagactactaaataaaaataataattttg 52706790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 106 - 277
Target Start/End: Complemental strand, 5163954 - 5163783
Alignment:
Q  106 ccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatc 205  Q
    |||||| ||||||| |||   |||||||||  ||||||| || ||||||||| ||| |||||||| ||| | |||||  ||||| |||||||||||||||    
T  5163954 cctttttattatttcaatagttttcttcttacattttttgttacaaaagattcatttataatcaaagttttctaaaataatattctcaatataattaatc 5163855  T
Q  206 aaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgccccta 277  Q
    ||| | | ||| ||||| |||||| ||| |||||||||||||||  ||||||||||||||||| ||||||||    
T  5163854 aaaccgaattaaaaagatatatatttatatagtactaactactaagtaaaaataataattttgatgccccta 5163783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 106 - 277
Target Start/End: Original strand, 40876892 - 40877063
Alignment:
Q  106 ccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatc 205  Q
    ||||||||||| |  || |||||| |||||  |||| | |||  |||||||| | |||||||||||||||| |||||| |||||||||||| ||||||||    
T  40876892 ccttttaattaatcaaacgtcttttttcttccatttctcattataaaagattcactcataatcaaggttctataaaaatatattttcaatagaattaatc 40876991  T
Q  206 aaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgccccta 277  Q
     || ||| ||| |||||||||||| ||| || |||||||||| |  |||||||||||||||||||| |||||    
T  40876992 caaacaagttaaaaagaaatatatttatataatactaactaccaagtaaaaataataattttggtgtcccta 40877063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 229
Target Start/End: Original strand, 36186574 - 36186700
Alignment:
Q  103 tgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataatta 202  Q
    ||||||||||||||||  ||||| ||||||| |  ||||||| |||||||||||| ||| |||||||| ||||| |||||| ||||||||||||||||||    
T  36186574 tgtccttttaattattctaatgtttttcttcatacattttttgttgcaaaagatttatttataatcaaagttctctaaaaatatattttcaatataatta 36186673  T
Q  203 atcaaagcaatttagaaagaaatatat 229  Q
    |||||||  | ||| ||||||||||||    
T  36186674 atcaaagagaattaaaaagaaatatat 36186700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 66 - 273
Target Start/End: Original strand, 30257707 - 30257915
Alignment:
Q  66 taagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcata 165  Q
    ||||| |||| |||||||||| |||  ||||| | | || |||||||| ||||| ||| | |||  ||||| ||||||| || ||||||||| ||| |||    
T  30257707 taagactttttgtgccctaggcgaaacaataagattgtgcccttttaaatattttaatattttttatcttgcattttttgtttcaaaagatttatttata 30257806  T
Q  166 atcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctat-gtagtactaactactacataaaaataataat 264  Q
    ||||| ||||| |||||| |||||||||||||||||||||||| | | ||  ||||||||||||||||  ||||| |||||| ||  |||||| ||||||    
T  30257807 atcaaagttctctaaaaatatattttcaatataattaatcaaaccgaattgaaaagaaatatatctatattagtattaactattaagtaaaaaaaataat 30257906  T
Q  265 tttggtgcc 273  Q
    |||| ||||    
T  30257907 tttgatgcc 30257915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 233
Target Start/End: Original strand, 16646926 - 16647053
Alignment:
Q  106 ccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatc 205  Q
    |||||||||||||| ||| | ||||||||| |||||||| ||||| |||||| ||| ||||| ||  |||| |||||| |||||||||||| ||||||||    
T  16646926 ccttttaattattttaatatttttcttcttttattttttgttgcacaagattcatttataattaaaattctctaaaaagatattttcaatagaattaatc 16647025  T
Q  206 aaagcaatttagaaagaaatatatctat 233  Q
    ||| ||| ||| ||||||||||||||||    
T  16647026 aaaacaaattaaaaagaaatatatctat 16647053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 265
Target Start/End: Original strand, 18829934 - 18830100
Alignment:
Q  106 ccttttaattatttgaatgtctttcttcttgtattttttatt------gcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataa 199  Q
    ||||| |||||||| |||||||||||||||||||||||| ||      |||||| ||| |||||||||||  ||||| |||||| |||||||||||| ||    
T  18829934 cctttcaattatttaaatgtctttcttcttgtatttttttttttttttgcaaaaaattcattcataatcattgttctctaaaaatatattttcaataaaa 18830033  T
Q  200 ttaatcaaagca-atttagaaagaaatatatctatgtagtactaactactacataaaaataataatt 265  Q
    ||||||| ||||  || | |||||||||||||||| |||||||| | ||||  ||||||||||||||    
T  18830034 ttaatcatagcatgttaaaaaagaaatatatctatatagtactacccactaagtaaaaataataatt 18830100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 272
Target Start/End: Complemental strand, 38561982 - 38561838
Alignment:
Q  127 tttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaata 226  Q
    |||||| ||||||||||| ||||| || ||| ||| ||||| || ||||| |||||| |||||||||||  ||||||||||| ||| ||| ||||||||     
T  38561982 tttctttttgtattttttgttgcacaatattcatttataatgaaagttctctaaaaaaatattttcaatg-aattaatcaaaacaaattaaaaagaaatg 38561884  T
Q  227 tatctatgtagtactaactactacataaaaataataattttggtgc 272  Q
    ||||||| | ||| ||||||||| |||||||||||||||| |||||    
T  38561883 tatctatattgtaataactactaaataaaaataataatttcggtgc 38561838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 138 - 268
Target Start/End: Original strand, 28556604 - 28556734
Alignment:
Q  138 attttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagc-aatttagaaagaaatatatctatgta 236  Q
    |||||||||| | |||||||  || || ||||| |||||||||||| ||||||| |||||||||||||||| | |||||| || ||||| ||||||| ||    
T  28556604 attttttatttccaaagattcgtttatcatcaaagttctttaaaaatatatttttaatataattaatcaaaccgaattta-aacgaaatgtatctatata 28556702  T
Q  237 gtactaactactacataaaaataataattttg 268  Q
    |||||||||||||  |||||||||||||||||    
T  28556703 gtactaactactaagtaaaaataataattttg 28556734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 270
Target Start/End: Complemental strand, 28149004 - 28148887
Alignment:
Q  152 aagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactaca 251  Q
    |||||||||| |||||||| ||||||||||||  ||||||||||||||||||||||| | | ||| ||| | |||||||| | ||||||||| ||||| |    
T  28149004 aagattaatttataatcaaagttctttaaaaatttattttcaatataattaatcaaaacgaatta-aaaaatatatatctctatagtactaattactata 28148906  T
Q  252 taaaaataataattttggt 270  Q
    ||||| |||||||||||||    
T  28148905 taaaagtaataattttggt 28148887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 212
Target Start/End: Complemental strand, 44157394 - 44157271
Alignment:
Q  88 gaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacata 187  Q
    ||||||||| || | ||||||||||||||||||||| | |||||||||||| |||||  |||||||  || ||||||||||||| |||| |||||| |||    
T  44157394 gaattaatagaattgtgtccttttaattatttgaatatatttcttcttgtaatttttgctgcaaaa-tttcattcataatcaagtttctctaaaaatata 44157296  T
Q  188 ttttcaatataattaatcaaagcaa 212  Q
    |||  |||| |||||||||||||||    
T  44157295 tttctaatagaattaatcaaagcaa 44157271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 196
Target Start/End: Original strand, 38608314 - 38608403
Alignment:
Q  107 cttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaata 196  Q
    ||||||||||||  ||||| ||| ||| |||||||||| ||||||| |||| ||||||||| ||||||||||||||| ||||||||||||    
T  38608314 cttttaattattcaaatgtgtttattcctgtattttttgttgcaaatgattgattcataattaaggttctttaaaaatatattttcaata 38608403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 106 - 249
Target Start/End: Complemental strand, 38134232 - 38134092
Alignment:
Q  106 ccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatc 205  Q
    ||||||| |||||  ||||||||| |||||  ||||||| |||||||||||| |||| |||  |||||||| |||||| ||||||| |||||||||||||    
T  38134232 ccttttagttattcaaatgtcttttttcttacattttttgttgcaaaagattcattcgtaaataaggttctctaaaaa-atatttttaatataattaatc 38134134  T
Q  206 aaagcaatttagaaagaaatatatctatgtagtactaactacta 249  Q
    ||| | | ||| ||||||  |||| |||||| ||||||||||||    
T  38134133 aaatcgagttaaaaagaa--atatttatgtactactaactacta 38134092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 40705888 - 40705964
Alignment:
Q  106 ccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaa 182  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||| ||| |||  |||||||||||||| ||||    
T  40705888 ccttttaattatttgaatgtctttcttcttgcattttttattacaaaaaatttatttgtaatcaaggttcttcaaaa 40705964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 38565174 - 38565256
Alignment:
Q  108 ttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatatttt 191  Q
    ||||||||||||||||||||||||| ||| ||||||| |  |||||||||| |||||||| ||||||||||||||| |||||||    
T  38565174 ttttaattatttgaatgtctttctttttggatttttt-taacaaaagattagttcataattaaggttctttaaaaatatatttt 38565256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 127 - 233
Target Start/End: Complemental strand, 34346068 - 34345964
Alignment:
Q  127 tttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaata 226  Q
    |||||||||||||||||| ||||||||| || ||| | ||||||  |||| |||||| ||||||||||||||| |||||||| ||| ||| |||||||||    
T  34346068 tttcttcttgtattttttgttgcaaaag-ttcatttagaatcaaaattctataaaaatatattttcaatataactaatcaaaccaaatta-aaagaaata 34345971  T
Q  227 tatctat 233  Q
    |||||||    
T  34345970 tatctat 34345964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 247
Target Start/End: Complemental strand, 16547870 - 16547683
Alignment:
Q  62 gtcctaagatttttagtgccctaggtgaattaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaatt 161  Q
    |||||||||||||| |||| || |  |||  ||||||| | ||||||||||||  ||| |||   |||||||||  ||||||| ||| |||||||  |||    
T  16547870 gtcctaagattttttgtgctctggacgaaacaataaaattgtgtccttttaatagtttcaatagttttcttcttacattttttgttgtaaaagatccatt 16547771  T
Q  162 cataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaa--atatatctatgtagtactaactac 247  Q
     |||||||| ||| | |||||  |||||||||||||||||||||||| ||| ||| ||| ||  |||||||||| |||||| ||||||    
T  16547770 tataatcaaagttttctaaaataatattttcaatataattaatcaaaccaaattaaaaaaaaatatatatctatatagtaccaactac 16547683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 32596747 - 32596823
Alignment:
Q  107 cttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaa 183  Q
    ||||||||||||| |||||||||||| ||||||||||||||| |||||||| ||| ||||| || ||| ||||||||    
T  32596747 cttttaattattttaatgtctttctttttgtattttttattgtaaaagattcattaataataaatgttatttaaaaa 32596823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 137 - 277
Target Start/End: Original strand, 17271258 - 17271401
Alignment:
Q  137 tattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaa---agaaatatatctat 233  Q
    |||||||||| ||| |||||| ||| |||||||| |||   |||||| |||||||||||||||||||||||| ||| | | ||   | | ||||||||||    
T  17271258 tattttttatcgcacaagattcatttataatcaaagtttgctaaaaatatattttcaatataattaatcaaaacaaatgaaaaaatatatatatatctat 17271357  T
Q  234 gtagtactaactactacataaaaataataattttggtgccccta 277  Q
     |  |||| |||||||  ||||||||||||||||||| ||||||    
T  17271358 attatactgactactaagtaaaaataataattttggtaccccta 17271401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 295
Target Start/End: Complemental strand, 15925641 - 15925450
Alignment:
Q  108 ttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatatttt---caatataattaat 204  Q
    ||||||||||||||| ||||||| | ||||||||||| || ||||||||| || ||| || || ||| | || ||| |||||||   |||||||||||||    
T  15925641 ttttaattatttgaacgtctttccttttgtattttttgttacaaaagattcat-cattattaaagttttctagaaatatatttttttcaatataattaat 15925543  T
Q  205 caaagcaatttagaaagaaatatatctatgtagtactaac--tactacataaaaataataattttggtgcccctaggaaaatggtgccttggg 295  Q
     ||||| | ||| ||||||||||||||||  | |||| ||  ||| |  ||||||||||||||||| | |||||   |||||||||| |||||    
T  15925542 taaagcgagttaaaaagaaatatatctatacaatacttacaatacaaagtaaaaataataattttgataccccttaaaaaatggtgctttggg 15925450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 229
Target Start/End: Complemental strand, 32415463 - 32415357
Alignment:
Q  121 aatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaa 220  Q
    ||||||||| ||  |||||||||| |||||||||||  |||||||||| ||||||| |||||  |||| ||||||| |||||||||||   | ||| |||    
T  32415463 aatgtctttttttctgtattttttgttgcaaaagatgcattcataatcgaggttctctaaaa--atatattcaataaaattaatcaaaatgagttaaaaa 32415366  T
Q  221 gaaatatat 229  Q
    |||||||||    
T  32415365 gaaatatat 32415357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 35280896 - 35280999
Alignment:
Q  101 tatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataat 200  Q
    ||||||||||||||||||| |   | |||||||||| ||||||||| | |||||||| ||||||||| |   || |||||||| |||||||||||| |||    
T  35280896 tatgtccttttaattatttta---tgtttcttcttgcattttttat-gaaaaagattcattcataatgataattatttaaaaatatattttcaatagaat 35280991  T
Q  201 taatcaaa 208  Q
    ||||||||    
T  35280992 taatcaaa 35280999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 308
Target Start/End: Original strand, 16647946 - 16648003
Alignment:
Q  251 ataaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcccctcg 308  Q
    |||||||||||||||||| ||||||||  ||||||||||| |||| | ||||||||||    
T  16647946 ataaaaataataattttgatgcccctaaaaaaatggtgccctgggttgccgcccctcg 16648003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 36506911 - 36507000
Alignment:
Q  178 taaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataatttt 267  Q
    ||||||| ||||||||||| ||| ||||||||  | ||| ||| |||||| ||||| || ||||||||||||  |||||||||| |||||    
T  36506911 taaaaacgtattttcaatagaatcaatcaaagagagttaaaaacaaatatttctatataatactaactactaattaaaaataatgatttt 36507000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 306
Target Start/End: Complemental strand, 14951695 - 14951611
Alignment:
Q  222 aaatatatctatgtagtactaactactacataaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcccct 306  Q
    ||||||||||||  | |||||||||||| ||||||||| |||| |||||||| | | || ||||||||  |||||| ||||||||    
T  14951695 aaatatatctataaattactaactactaaataaaaatattaatcttggtgcctcaaagataatggtgctctgggctgccgcccct 14951611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 37911447 - 37911387
Alignment:
Q  253 aaaaataataattttggtgcccctaggaaaatggtgccttgggctcccgcccctcgaggcc 313  Q
    |||||||||||||||||||||||||   |||||||| | |||||| ||||||||| |||||    
T  37911447 aaaaataataattttggtgcccctaaataaatggtgtcctgggctgccgcccctcaaggcc 37911387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 154
Target Start/End: Original strand, 637104 - 637137
Alignment:
Q  121 aatgtctttcttcttgtattttttattgcaaaag 154  Q
    ||||||||||||||| ||||||||||||||||||    
T  637104 aatgtctttcttcttatattttttattgcaaaag 637137  T

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Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 2887013 - 2887094
Alignment:
Q  127 tttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaa 208  Q
    |||||||||| ||||||| ||| | | |||| ||| |||||||| ||||| |||||| || |||| |||| |||||||||||    
T  2887013 tttcttcttgcattttttgttgtagatgatttatttataatcaaagttctctaaaaatatttttttaatagaattaatcaaa 2887094  T

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Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 4206647 - 4206700
Alignment:
Q  224 atatatctatgtagtactaactactacataaaaataataattttggtgccccta 277  Q
    |||||| ||| || ||||||||||||  |||| |||||||||||||||||||||    
T  4206647 atatatatatatattactaactactaagtaaatataataattttggtgccccta 4206700  T

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Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 14952134 - 14952045
Alignment:
Q  108 ttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatc-aaggttctttaaaaacatattttcaata 196  Q
    ||||||||||| |||| |||||||| ||  | ||||| |||||||| ||| |||| ||||| |||||||| ||||||  |||||||||||    
T  14952134 ttttaattattcgaatatctttctttttacaatttttgttgcaaaatattcattcctaatcaaaggttctctaaaaatgtattttcaata 14952045  T

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Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 26350439 - 26350511
Alignment:
Q  137 tattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaagc 210  Q
    ||||||||  ||||||| ||| ||||||||  || ||| |||||||| |||||||||||| |||||||||||||    
T  26350439 tattttttgctgcaaaaaattcattcataaataaagttttttaaaaa-atattttcaataaaattaatcaaagc 26350511  T

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Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 33819217 - 33819262
Alignment:
Q  222 aaatatatctatgtagtactaactactacataaaaataataatttt 267  Q
    ||||||||||||||||||| ||||  || |||||||||||||||||    
T  33819217 aaatatatctatgtagtaccaacttttaaataaaaataataatttt 33819262  T

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Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 28226833 - 28226877
Alignment:
Q  226 atatctatgtagtactaactactacataaaaataataattttggt 270  Q
    |||||||| || || ||||||||| ||||||||||||||||||||    
T  28226833 atatctatataatattaactactaaataaaaataataattttggt 28226877  T

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Target: scaffold0531 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 270
Target Start/End: Complemental strand, 9806 - 9699
Alignment:
Q  163 ataatcaaggttctttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataata 262  Q
    |||||||| ||| | |||||| ||||| |||||||||||||||||| | | ||| ||||| |||||||||| ||||||||||||||| ||||||||||||    
T  9806 ataatcaaagttttctaaaaatatattctcaatataattaatcaaaccgaattaaaaagatatatatctatatagtactaactactaaataaaaataata 9707  T
Q  263 attttggt 270  Q
    ||||||||    
T  9706 attttggt 9699  T

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Target: scaffold0527 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 103 - 202
Target Start/End: Complemental strand, 1810 - 1711
Alignment:
Q  103 tgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataatta 202  Q
    |||| |||||||||||| ||| | |||||||||  |||||||||||||||||||| ||| |||||||| ||||| |||||| |||||||||||| |||||    
T  1810 tgtctttttaattatttcaatatttttcttctttcattttttattgcaaaagatttatttataatcaaagttctctaaaaatatattttcaataaaatta 1711  T

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Target: scaffold0527; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 103 - 202
Target Start/End: Complemental strand, 9873 - 9774
Alignment:
Q  103 tgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataatta 202  Q
    |||| |||||||||||| ||| | |||||||||  |||||||||||||||||||| ||| |||||||| ||||| |||||| |||||||||||| |||||    
T  9873 tgtctttttaattatttcaatatttttcttctttcattttttattgcaaaagatttatttataatcaaagttctctaaaaatatattttcaataaaatta 9774  T

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Target: scaffold1173 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 209
Target Start/End: Complemental strand, 487 - 387
Alignment:
Q  109 tttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaacatattttcaatataattaatcaaa 208  Q
    ||||||||||  ||| | |||||||||| ||||||||||| |||| ||||||| |||||||| ||| | |||||| || ||||||||  ||||||| |||    
T  487 tttaattattcaaatatttttcttcttgcattttttattgtaaaatattaatttataatcaaagttatctaaaaatattttttcaattgaattaattaaa 388  T
Q  209 g 209  Q
    |    
T  387 g 387  T

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Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 294
Target Start/End: Complemental strand, 65123 - 65012
Alignment:
Q  185 atattttcaatataattaatcaaagcaattt---agaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcccctaggaa 281  Q
    |||||||||||| ||||||||||||||| ||   | ||| |||| ||||| | | ||||||| |||||  |||| ||||||||||| |||||||||  ||    
T  65123 atattttcaatagaattaatcaaagcaaattaaaaaaaaaaaatctatctttattgtactaattactaagtaaatataataatttt-gtgcccctaaaaa 65025  T
Q  282 aatggtgccttgg 294  Q
    |||||||||||||    
T  65024 aatggtgccttgg 65012  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 267
Target Start/End: Complemental strand, 328092 - 327934
Alignment:
Q  108 ttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaattcataatcaaggttctttaaaaaca-tattttcaatataattaatca 206  Q
    ||||||||||||||  || ||| |||||  |||||||||||  ||||||  ||||||||  || ||| | |||||| | |||||| |||| |||||||||    
T  328092 ttttaattatttgaccgtattttttcttacattttttattgttaaagatccattcataaataaagttttataaaaaaaatatttttaatagaattaatca 327993  T
Q  207 aagcaatttagaaagaaatatatctatgtagtactaactactacataaaaataataatttt 267  Q
    |||  | |||  ||||||||||| ||| || ||| || ||||| ||||| |||||||||||    
T  327992 aagtgagtta--aagaaatatatgtatatactaccaattactaaataaacataataatttt 327934  T

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