View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2726_high_33 (Length: 213)
Name: NF2726_high_33
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2726_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 33993456 - 33993272
Alignment:
| Q |
18 |
ctaatgagtctttaagctgaagtgtttcacgatcaagagtcaaagtctctaagtctcttgctgcagtgaagagaatggtgccacctggagtttcgtaaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993456 |
ctaatgagtctttaagctgaagtgtttcacgatcaagagtcaaagtctctaagtctcttgctgcagtgaagagaatggtgccacctggagtttcgtaaac |
33993357 |
T |
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| Q |
118 |
tcctcggctcttcatgcctacaatgcggtcttcaaccaagtcgacacggcctattccatgccttccacctatctcattcatctca |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33993356 |
tcctcggctcttcatgcctacaatgcggtcttcaaccaagtcgacacggcctattccatgccttccacctatctcattcagctca |
33993272 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 34000458 - 34000281
Alignment:
| Q |
18 |
ctaatgagtctttaagctgaagtgtttcacgatcaagagtcaaagtctctaagtctcttgctgcagtgaagagaatggtgccacctggagtttcgtaaac |
117 |
Q |
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|||| ||||||||||||||||||||||||||||| || || ||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| |
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| T |
34000458 |
ctaacgagtctttaagctgaagtgtttcacgatcgagtgttaaactctctaagtctcttgctgcggtgaagaaaatggtgccacctggagtttcataaac |
34000359 |
T |
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| Q |
118 |
tcctcggctcttcatgcctacaatgcggtcttcaaccaagtcgacacggcctattccatgccttccacctatctcatt |
195 |
Q |
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|||||||||||||| |||||||||| ||| |||||| | ||||||| |||||||||||||||||||||||||||||| |
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| T |
34000358 |
tcctcggctcttcaggcctacaatgtggttttcaactatatcgacacagcctattccatgccttccacctatctcatt |
34000281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 18852512 - 18852689
Alignment:
| Q |
18 |
ctaatgagtctttaagctgaagtgtttcacgatcaagagtcaaagtctctaagtctcttgctgcagtgaagagaatggtgccacctggagtttcgtaaac |
117 |
Q |
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||||||| ||||| | ||| | |||||| |||||||| ||||||| ||| || || | ||| |||| || || || || ||||| || ||||||||||| |
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| T |
18852512 |
ctaatgaatctttgacctgtattgtttctcgatcaagtgtcaaagactccaactcccgtgcggcagcaaaaaggatagttccaccaggtgtttcgtaaac |
18852611 |
T |
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| Q |
118 |
tcctcggctcttcatgcctacaatgcggtcttcaaccaagtcgacacggcctattccatgccttccacctatctcatt |
195 |
Q |
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||| ||||| ||||||||||||| || | ||||||| ||||| ||||| ||||| |||||||||||||||||||| |
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| T |
18852612 |
tccgcggcttttcatgcctacaagccgattctcaaccatgtcgatccggccaattccgtgccttccacctatctcatt |
18852689 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 40 - 195
Target Start/End: Original strand, 42865645 - 42865800
Alignment:
| Q |
40 |
tgtttcacgatcaagagtcaaagtctctaagtctcttgctgcagtgaagagaatggtgccacctggagtttcgtaaactcctcggctcttcatgcctaca |
139 |
Q |
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|||||| |||||||| ||||||| ||| || || | |||||| | ||||| || || ||||| |||||||| |||||||| |||||||||||||||||| |
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| T |
42865645 |
tgtttctcgatcaagtgtcaaagactccaactcccgtgctgctttaaagaggatagtcccaccaggagtttcataaactccacggctcttcatgcctaca |
42865744 |
T |
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| Q |
140 |
atgcggtcttcaaccaagtcgacacggcctattccatgccttccacctatctcatt |
195 |
Q |
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| | | ||||||| ||||| ||||| ||||| ||| |||||||||||||||| |
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| T |
42865745 |
agcctattctcaaccatgtcgatccggccaattccgtgctttccacctatctcatt |
42865800 |
T |
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