View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2726_low_10 (Length: 404)

Name: NF2726_low_10
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2726_low_10
NF2726_low_10
[»] chr7 (19 HSPs)
chr7 (23-322)||(11656987-11657286)
chr7 (23-268)||(22613088-22613333)
chr7 (23-263)||(13475654-13475894)
chr7 (127-291)||(15865485-15865649)
chr7 (253-320)||(22613015-22613082)
chr7 (325-391)||(11657767-11657833)
chr7 (127-268)||(48378441-48378582)
chr7 (127-271)||(16062210-16062354)
chr7 (325-391)||(22612485-22612551)
chr7 (325-391)||(13475027-13475093)
chr7 (266-320)||(13475576-13475630)
chr7 (137-204)||(14105840-14105907)
chr7 (252-291)||(48378587-48378626)
chr7 (137-211)||(41523469-41523543)
chr7 (137-211)||(41525931-41526005)
chr7 (168-204)||(17505377-17505413)
chr7 (168-204)||(17547801-17547837)
chr7 (168-212)||(26355517-26355561)
chr7 (168-212)||(26357969-26358013)
[»] chr2 (10 HSPs)
chr2 (23-268)||(44584509-44584754)
chr2 (26-201)||(24787923-24788098)
chr2 (32-178)||(23652387-23652533)
chr2 (253-325)||(44584431-44584503)
chr2 (325-391)||(24788653-24788720)
chr2 (137-211)||(24897732-24897806)
chr2 (137-211)||(24900215-24900289)
chr2 (137-211)||(24905169-24905243)
chr2 (137-211)||(24907644-24907718)
chr2 (325-366)||(44583911-44583952)
[»] chr6 (7 HSPs)
chr6 (23-268)||(20146256-20146501)
chr6 (23-268)||(22186334-22186583)
chr6 (44-186)||(10905419-10905561)
chr6 (325-370)||(15119066-15119111)
chr6 (137-211)||(33862345-33862419)
chr6 (155-192)||(17883246-17883283)
chr6 (72-109)||(22396103-22396140)
[»] scaffold0054 (1 HSPs)
scaffold0054 (23-268)||(70724-70973)
[»] chr4 (18 HSPs)
chr4 (23-202)||(11557770-11557949)
chr4 (32-186)||(18218877-18219031)
chr4 (54-201)||(11939973-11940120)
chr4 (23-121)||(16283584-16283682)
chr4 (252-309)||(43208273-43208329)
chr4 (79-202)||(8808284-8808407)
chr4 (168-211)||(9923839-9923882)
chr4 (328-371)||(12230967-12231010)
chr4 (71-122)||(17418904-17418955)
chr4 (155-186)||(19857955-19857986)
chr4 (155-189)||(3515577-3515611)
chr4 (325-391)||(8808870-8808936)
chr4 (137-211)||(12033310-12033384)
chr4 (137-202)||(45314712-45314777)
chr4 (168-204)||(16277700-16277736)
chr4 (168-204)||(22725269-22725305)
chr4 (137-205)||(50221882-50221950)
chr4 (168-204)||(53387310-53387346)
[»] chr1 (8 HSPs)
chr1 (27-200)||(10389473-10389646)
chr1 (127-268)||(51625295-51625436)
chr1 (137-211)||(41373023-41373097)
chr1 (137-205)||(7792224-7792292)
chr1 (155-186)||(9044759-9044790)
chr1 (137-211)||(21841318-21841392)
chr1 (137-211)||(21922828-21922902)
chr1 (92-201)||(24853142-24853251)
[»] scaffold0003 (1 HSPs)
scaffold0003 (127-289)||(132249-132411)
[»] scaffold0048 (1 HSPs)
scaffold0048 (24-200)||(53813-53989)
[»] scaffold0063 (1 HSPs)
scaffold0063 (127-289)||(26463-26625)
[»] scaffold1269 (1 HSPs)
scaffold1269 (96-291)||(1676-1871)
[»] chr3 (21 HSPs)
chr3 (127-268)||(17959589-17959730)
chr3 (326-391)||(19186939-19187003)
chr3 (23-178)||(17792743-17792898)
chr3 (23-178)||(19101183-19101338)
chr3 (325-391)||(5941625-5941691)
chr3 (23-201)||(22841651-22841829)
chr3 (127-265)||(14058085-14058223)
chr3 (325-382)||(21100593-21100650)
chr3 (76-197)||(25784690-25784811)
chr3 (325-384)||(17793501-17793559)
chr3 (325-384)||(19101941-19101999)
chr3 (155-200)||(36528532-36528577)
chr3 (137-204)||(10554879-10554946)
chr3 (252-291)||(17959545-17959584)
chr3 (155-186)||(27165822-27165853)
chr3 (168-211)||(33564772-33564815)
chr3 (155-186)||(53301065-53301096)
chr3 (137-211)||(7780883-7780957)
chr3 (341-391)||(15958163-15958213)
chr3 (137-211)||(15978084-15978158)
chr3 (154-186)||(16282512-16282544)
[»] scaffold0061 (2 HSPs)
scaffold0061 (127-291)||(17056-17220)
scaffold0061 (127-291)||(26114-26278)
[»] scaffold1559 (1 HSPs)
scaffold1559 (66-186)||(618-738)
[»] scaffold1001 (1 HSPs)
scaffold1001 (23-108)||(3217-3302)
[»] scaffold0145 (1 HSPs)
scaffold0145 (23-121)||(14034-14132)
[»] scaffold0512 (1 HSPs)
scaffold0512 (92-201)||(9799-9908)
[»] scaffold0218 (1 HSPs)
scaffold0218 (252-289)||(16190-16227)
[»] scaffold0166 (1 HSPs)
scaffold0166 (325-391)||(3477-3544)
[»] scaffold0007 (1 HSPs)
scaffold0007 (137-204)||(159323-159390)
[»] scaffold0001 (1 HSPs)
scaffold0001 (137-216)||(139562-139641)
[»] chr8 (8 HSPs)
chr8 (168-211)||(29763235-29763278)
chr8 (137-211)||(4541910-4541984)
chr8 (72-109)||(17861960-17861997)
chr8 (168-205)||(21579579-21579616)
chr8 (138-211)||(24485580-24485653)
chr8 (155-195)||(16401284-16401324)
chr8 (154-186)||(19936662-19936694)
chr8 (154-186)||(27472171-27472203)
[»] chr5 (9 HSPs)
chr5 (137-204)||(24617296-24617363)
chr5 (137-204)||(24713527-24713594)
chr5 (137-204)||(24746555-24746622)
chr5 (325-391)||(24760980-24761047)
chr5 (71-122)||(25791257-25791308)
chr5 (137-211)||(10732477-10732551)
chr5 (168-204)||(24668570-24668606)
chr5 (168-204)||(24738339-24738375)
chr5 (168-204)||(24751108-24751144)
[»] scaffold0363 (1 HSPs)
scaffold0363 (137-211)||(9793-9867)
[»] scaffold0317 (1 HSPs)
scaffold0317 (136-186)||(6690-6740)
[»] scaffold0306 (1 HSPs)
scaffold0306 (136-186)||(11094-11144)
[»] scaffold0254 (1 HSPs)
scaffold0254 (137-211)||(21300-21374)
[»] scaffold1043 (1 HSPs)
scaffold1043 (72-109)||(1141-1178)
[»] scaffold0091 (1 HSPs)
scaffold0091 (127-220)||(30817-30910)
[»] scaffold0151 (1 HSPs)
scaffold0151 (137-205)||(9667-9735)
[»] scaffold0017 (1 HSPs)
scaffold0017 (168-204)||(26158-26194)


Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 23 - 322
Target Start/End: Original strand, 11656987 - 11657286
Alignment:
Q  23 cagagaagagtggaaagatttgtttccctgaacctaggcagatcgcataaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatgt 122  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||    
T  11656987 cagagaagggtggaaagatttgtttccctgaacctaggcagatcgcataaccgtgttgacccctgtgtggtattttgatcataactcccgttttggatgt 11657086  T
Q  123 cttcttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaaatggttaaaca 222  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11657087 cttcttgaggtgagagcaaagccattgaaaatctaacatacatacctacaactttcgtgtttacgccaaaactcagttcaaaagggaaaatggttaaaca 11657186  T
Q  223 aaacaatttttatttgttaagttgagctgacaaaatcggggcccgatttttgtcaaatcaaaacactcaaattttgaaccaaaatcggtggccgatttcc 322  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11657187 aaacattttttatttgttaagttgagctgacaaaatcggggcccgatttttgtcgaatcaaaacactcaaattttgaaccaaaatcggtggccgatttcc 11657286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 23 - 268
Target Start/End: Complemental strand, 22613333 - 22613088
Alignment:
Q  23 cagagaagagtggaaagatttgtttccctgaacctaggcagatcgcataaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatgt 122  Q
    |||||||| ||||||||||| | ||||||||||||||||||||||| | |||||||||||||||||| ||||||| |||| |||||  ||||||||||||    
T  22613333 cagagaagcgtggaaagattggcttccctgaacctaggcagatcgcttgaccgtgctgacccctgtgtagtatttcgatcttaactaacgttttggatgt 22613234  T
Q  123 cttcttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaaatggttaaaca 222  Q
    ||||||||||||||||||||||||||| ||  |||| | | |||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  22613233 cttcttgaggtgagaccaaagccattggaaagctaagacatatacctacaacttttgtgtttacaccaaaacccagttcaaaacggaaaatggttaaaca 22613134  T
Q  223 aaacaatttttatttgttaagttgagctgacaaaatcggggcccga 268  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||    
T  22613133 aaacagtttttatttgttaagttgggctgacaaaatcggggaccga 22613088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 23 - 263
Target Start/End: Complemental strand, 13475894 - 13475654
Alignment:
Q  23 cagagaagagtggaaagatttgtttccctgaacctaggcagatcgcataaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatgt 122  Q
    |||||||| ||||||||||| |||||||  ||||||||||||| |||| ||||| || ||||||||| | |||||  |||||||||| ||||||||||||    
T  13475894 cagagaagggtggaaagattggtttcccaaaacctaggcagattgcatgaccgtactaacccctgtgtattatttcaatcataactcacgttttggatgt 13475795  T
Q  123 cttcttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaaatggttaaaca 222  Q
    |||||||||||||||||||| |||||| ||  |||||||||||||||||||| || |||||||| |||||||||||||| ||| |||||||||||||| |    
T  13475794 cttcttgaggtgagaccaaatccattggaaagctaacatacatacctacaacctttgtgtttacaccaaaacccagttcgaaacggaaaatggttaaaaa 13475695  T
Q  223 aaacaatttttatttgttaagttgagctgacaaaatcgggg 263  Q
    ||||| ||||||||||||| |||| | ||||||||||||||    
T  13475694 aaacagtttttatttgttatgttgggttgacaaaatcgggg 13475654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 291
Target Start/End: Complemental strand, 15865649 - 15865485
Alignment:
Q  127 ttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaaatggttaaacaaaac 226  Q
    ||||||||| ||||||||||| | ||  |||||| ||||||| | ||||||| |||||   || ||| |||||||  || | |||||||||||| | |||    
T  15865649 ttgaggtgaaaccaaagccatcggaaagctaacacacataccgaaaactttcatgtttcgaccgaaatccagttcggaacgaaaaatggttaaaaacaac 15865550  T
Q  227 aatttttatttgttaagttgagctgacaaaatcggggcccgatttttgtcaaatcaaaacactca 291  Q
      ||||| ||||||||||||  |||||||||||||||||| ||||||||| ||||||||||||||    
T  15865549 cgtttttgtttgttaagttgttctgacaaaatcggggcccaatttttgtcgaatcaaaacactca 15865485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 22613082 - 22613015
Alignment:
Q  253 caaaatcggggcccgatttttgtcaaatcaaaacactcaaattttgaaccaaaatcggtggccgattt 320  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||    
T  22613082 caaaatcggggcccgatttttgtcgaatcaaaacactaaaattttgaaccaaaattggtggccgattt 22613015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 11657767 - 11657833
Alignment:
Q  325 actagggttccgcttctctccctctgcttttcttctcccttttctctgattagcaaaactaatttct 391  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  11657767 actagggttcctcttctctccctcttcttttcttctcccttttctctgattagcaaaactgatttct 11657833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 127 - 268
Target Start/End: Original strand, 48378441 - 48378582
Alignment:
Q  127 ttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaaatggttaaacaaaac 226  Q
    ||||||||| ||||||||||||| ||  |||||| ||||||||| || |||| |||||   || ||| |||||||  || |||||||||||||| | |||    
T  48378441 ttgaggtgaaaccaaagccattggaaagctaacacacatacctaaaattttcatgtttcgaccgaaatccagttcggaacggaaaatggttaaaaacaac 48378540  T
Q  227 aatttttatttgttaagttgagctgacaaaatcggggcccga 268  Q
    | ||||| |||||||||||| |||||||||||||||| ||||    
T  48378541 agtttttgtttgttaagttgtgctgacaaaatcgggggccga 48378582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 127 - 271
Target Start/End: Original strand, 16062210 - 16062354
Alignment:
Q  127 ttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaaatggttaaacaaaac 226  Q
    ||||||||| |||||| |||||| ||  |||||| ||||||||| ||||||| |||||   || ||| |||||||  || |||||||||||||| | |||    
T  16062210 ttgaggtgaaaccaaatccattggaaagctaacagacatacctaaaactttcatgttttgaccgaaatccagttcggaatggaaaatggttaaaaacaac 16062309  T
Q  227 aatttttatttgttaagttgagctgacaaaatcggggcccgattt 271  Q
    | ||||| |||||||||||| ||||| |||||||||| |||||||    
T  16062310 agtttttgtttgttaagttgtgctgataaaatcgggggccgattt 16062354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 325 - 391
Target Start/End: Complemental strand, 22612551 - 22612485
Alignment:
Q  325 actagggttccgcttctctccctctgcttttcttctcccttttctctgattagcaaaactaatttct 391  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| ||||||    
T  22612551 actagggttccgcttctctctgtctgcttttcttctcccttttctctgattagaaaaactgatttct 22612485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 391
Target Start/End: Complemental strand, 13475093 - 13475027
Alignment:
Q  325 actagggttccgcttctctccctctgcttttcttctcccttttctctgattagcaaaactaatttct 391  Q
    |||||||||| ||||||||||||||| ||||||||| |||||||||| |||||||||||| ||||||    
T  13475093 actagggttcagcttctctccctctggttttcttcttccttttctctaattagcaaaactgatttct 13475027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 266 - 320
Target Start/End: Complemental strand, 13475630 - 13475576
Alignment:
Q  266 cgatttttgtcaaatcaaaacactcaaattttgaaccaaaatcggtggccgattt 320  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  13475630 cgatttttttcgaatcaaaacactcaaattttgaaccaaaatcggtggccgattt 13475576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 14105907 - 14105840
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaa 204  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| ||||||| |||||||||||||||||    
T  14105907 accaaagccattggaaagctaacaaaattatctacaactttcatgtttacaccaaaacccagttcaaa 14105840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 291
Target Start/End: Original strand, 48378587 - 48378626
Alignment:
Q  252 acaaaatcggggcccgatttttgtcaaatcaaaacactca 291  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  48378587 acaaaattggggcccgatttttgtcgaatcaaaacactca 48378626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 41523469 - 41523543
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaa 211  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| | ||||| |||||||||||||||||| |||||    
T  41523469 accaaagccattggaaagctaacaaaattatctacaactttcatttttacaccaaaacccagttcaaaacggaaa 41523543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 41525931 - 41526005
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaa 211  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| | ||||| |||||||||||||||||| |||||    
T  41525931 accaaagccattggaaagctaacaaaattatctacaactttcatttttacaccaaaacccagttcaaaacggaaa 41526005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 17505413 - 17505377
Alignment:
Q  168 ctacaactttcgtgtttacgccaaaacccagttcaaa 204  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  17505413 ctacaactttcatgtttacaccaaaacccagttcaaa 17505377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 17547801 - 17547837
Alignment:
Q  168 ctacaactttcgtgtttacgccaaaacccagttcaaa 204  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  17547801 ctacaactttcatgtttacaccaaaacccagttcaaa 17547837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 26355561 - 26355517
Alignment:
Q  168 ctacaactttcgtgtttacgccaaaacccagttcaaaagggaaaa 212  Q
    ||||||||||| | ||||| |||||||||||||||||| ||||||    
T  26355561 ctacaactttcatttttacaccaaaacccagttcaaaacggaaaa 26355517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 26358013 - 26357969
Alignment:
Q  168 ctacaactttcgtgtttacgccaaaacccagttcaaaagggaaaa 212  Q
    ||||||||||| | ||||| |||||||||||||||||| ||||||    
T  26358013 ctacaactttcatttttacaccaaaacccagttcaaaacggaaaa 26357969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 23 - 268
Target Start/End: Complemental strand, 44584754 - 44584509
Alignment:
Q  23 cagagaagagtggaaagatttgtttccctgaacctaggcagatcgcataaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatgt 122  Q
    |||||||| |||||||||||  ||| || |||| |||||||||| ||| |||||| |||||| |||| ||||||| ||  | ||||| |||| |||||||    
T  44584754 cagagaagggtggaaagattgattttcccgaacttaggcagatcacatgaccgtgatgacccatgtgtagtatttcgactacaactcacgttgtggatgt 44584655  T
Q  123 cttcttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaaatggttaaaca 222  Q
    || ||||||||||||||||| |||||| ||  ||||||||||||||||||||||| |||||||| ||||||| || ||||||| |||||||||||||| |    
T  44584654 ctccttgaggtgagaccaaatccattggaaagctaacatacatacctacaacttttgtgtttacaccaaaactcaattcaaaacggaaaatggttaaaaa 44584555  T
Q  223 aaacaatttttatttgttaagttgagctgacaaaatcggggcccga 268  Q
    |||||||||||||||| ||||||| ||| |||||||||||| ||||    
T  44584554 aaacaatttttatttgctaagttgggctaacaaaatcgggggccga 44584509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 24787923 - 24788098
Alignment:
Q  26 agaagagtggaaagatttgtttccctgaacctaggcagatcgcataaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatgtctt 125  Q
    ||||| |||||||||||  ||||||||||||||||||||| |||| |||||| | ||||||||| |||||||  |||||||| | |||| ||||||||||    
T  24787923 agaagggtggaaagattgatttccctgaacctaggcagattgcatgaccgtgttcacccctgtgtagtatttcaatcataacgcacgttgtggatgtctt 24788022  T
Q  126 cttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttc 201  Q
    ||||||||||| |||||||||||| ||   |||||| |||||||||||||||| ||||||| |||| |||||||||    
T  24788023 cttgaggtgaggccaaagccattggaaagataacatccatacctacaactttcatgtttacaccaatacccagttc 24788098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 32 - 178
Target Start/End: Complemental strand, 23652533 - 23652387
Alignment:
Q  32 gtggaaagatttgtttccctgaacctaggcagatcgcataaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatgtcttcttgag 131  Q
    ||||||||||| |||| ||||||||||||||||||||||  |||| |||| |||| || | |||||| |||||||||| |||| |||||||| |||||||    
T  23652533 gtggaaagattggttttcctgaacctaggcagatcgcatggccgtactgaaccctttgtattattttcatcataactcacgttgtggatgtcctcttgag 23652434  T
Q  132 gtgagaccaaagccattgaaattctaacatacatacctacaactttc 178  Q
    |||||||||||||| ||| || |||||||| ||||||||||||||||    
T  23652433 gtgagaccaaagccgttggaaatctaacatccatacctacaactttc 23652387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 253 - 325
Target Start/End: Complemental strand, 44584503 - 44584431
Alignment:
Q  253 caaaatcggggcccgatttttgtcaaatcaaaacactcaaattttgaaccaaaatcggtggccgatttcctaa 325  Q
    |||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| |||||||||    
T  44584503 caaaatcggggcccgattttcgtcgaatcaaaacactcaaattttaaaccaaaatcggtggccaatttcctaa 44584431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 24788653 - 24788720
Alignment:
Q  325 actagggttccgcttctctccctctgcttttcttctccc-ttttctctgattagcaaaactaatttct 391  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||| ||| ||||||||||||||||    
T  24788653 actagggttccgcttctctccctttgtttttcttctccctttttctccgatcagcaaaactaatttct 24788720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 24897806 - 24897732
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaa 211  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| | ||||| |||||||||||||||||| |||||    
T  24897806 accaaagccattggaaagctaacaaaattatctacaactttcatttttacaccaaaacccagttcaaaacggaaa 24897732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 24900289 - 24900215
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaa 211  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| | ||||| |||||||||||||||||| |||||    
T  24900289 accaaagccattggaaagctaacaaaattatctacaactttcatttttacaccaaaacccagttcaaaacggaaa 24900215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 24905243 - 24905169
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaa 211  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| | ||||| |||||||||||||||||| |||||    
T  24905243 accaaagccattggaaagctaacaaaattatctacaactttcatttttacaccaaaacccagttcaaaacggaaa 24905169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 24907718 - 24907644
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaa 211  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| | ||||| |||||||||||||||||| |||||    
T  24907718 accaaagccattggaaagctaacaaaattatctacaactttcatttttacaccaaaacccagttcaaaacggaaa 24907644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 366
Target Start/End: Complemental strand, 44583952 - 44583911
Alignment:
Q  325 actagggttccgcttctctccctctgcttttcttctcccttt 366  Q
    |||||| |||||||||||||| |||||||||| |||||||||    
T  44583952 actaggattccgcttctctccatctgcttttcctctcccttt 44583911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 23 - 268
Target Start/End: Complemental strand, 20146501 - 20146256
Alignment:
Q  23 cagagaagagtggaaagatttgtttccctgaacctaggcagatcgcataaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatgt 122  Q
    |||| ||| ||||||||| | |||| ||||||||||||||||| |||| || ||||||||||||||| ||||||||||||||| |   |||| |||||||    
T  20146501 cagataagggtggaaagaatggttttcctgaacctaggcagattgcatgacggtgctgacccctgtgtagtattttgatcatagcgtacgttgtggatgt 20146402  T
Q  123 cttcttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaaatggttaaaca 222  Q
     |    |||||| ||||||||||| || ||  ||||||  |||||||||||||||| ||||||| |  ||||||||||||||| |||||||||||||| |    
T  20146401 atgaaggaggtgcgaccaaagccaatggaaaactaacacgcatacctacaactttcatgtttacactgaaacccagttcaaaacggaaaatggttaaaaa 20146302  T
Q  223 aaacaatttttatttgttaagttgagctgacaaaatcggggcccga 268  Q
    ||||| |||||||||||||||||| ||||||||||| |||| ||||    
T  20146301 aaacagtttttatttgttaagttgggctgacaaaatggggggccga 20146256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 268
Target Start/End: Original strand, 22186334 - 22186583
Alignment:
Q  23 cagagaagagtggaaagatttgtttccctgaacctaggcagatcgcataaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatgt 122  Q
    |||| ||| ||||||||| |||||| ||||||||||||||||| |||| || ||||||||||||||| |||||||||||||||||   |||| |||||||    
T  22186334 cagataagggtggaaagaattgttttcctgaacctaggcagattgcatgacggtgctgacccctgtgtagtattttgatcataacgtacgttgtggatgt 22186433  T
Q  123 cttcttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaaatggtt-aaac 221  Q
     |    |||||||||||||||||| || ||  ||||||  |||||||||||||||| ||||||| || |||| || ||||||| ||||||||||| |||     
T  22186434 atgaaggaggtgagaccaaagccaatggaacgctaacacgcatacctacaactttcatgtttacaccgaaactcaattcaaaacggaaaatggttaaaaa 22186533  T
Q  222 aaaacaatttttat---ttgttaagttgagctgacaaaatcggggcccga 268  Q
    |||||| |||||||   ||||||||||| ||| ||||||| |||| ||||    
T  22186534 aaaacagtttttatttgttgttaagttgggctaacaaaatggggggccga 22186583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 44 - 186
Target Start/End: Complemental strand, 10905561 - 10905419
Alignment:
Q  44 gtttccctgaacctaggcagatcgcataaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatgtcttcttgaggtgagaccaaag 143  Q
    |||| |||||||||||||||||||||| |||||| |||||||| || ||||||||||||||||||| |||| |||||||||||||||  |||||| | |     
T  10905561 gttttcctgaacctaggcagatcgcatgaccgtgttgacccctttgtagtattttgatcataactcacgttgtggatgtcttcttgaaatgagactagaa 10905462  T
Q  144 ccattgaaattctaacatacatacctacaactttcgtgtttac 186  Q
     ||||| ||  ||||||| |||||||||||||||| |||||||    
T  10905461 tcattggaaagctaacatccatacctacaactttcatgtttac 10905419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 370
Target Start/End: Original strand, 15119066 - 15119111
Alignment:
Q  325 actagggttccgcttctctccctctgcttttcttctcccttttctc 370  Q
    |||||||||| |||||||||| ||| ||||||||||||||||||||    
T  15119066 actagggttctgcttctctccgtcttcttttcttctcccttttctc 15119111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 33862345 - 33862419
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaa 211  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| | ||||| |||||||||||||||||| |||||    
T  33862345 accaaagccattggaaagctaacaaaattatctacaactttcatttttacaccaaaacccagttcaaaacggaaa 33862419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 17883283 - 17883246
Alignment:
Q  155 ctaacatacatacctacaactttcgtgtttacgccaaa 192  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  17883283 ctaacatccatacctacaactttcgtgtttacaccaaa 17883246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 22396140 - 22396103
Alignment:
Q  72 accgtgctgacccctgtgcagtattttgatcataactc 109  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  22396140 accgtgctgacctctgtgtagtattttgatcataactc 22396103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 268
Target Start/End: Original strand, 70724 - 70973
Alignment:
Q  23 cagagaagagtggaaagatttgtttccctgaacctaggcagatcgcataaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatgt 122  Q
    |||| ||| ||||||||| |||||| ||||||||||||||||| |||| || ||||||||||||||| |||||||||||||||||   |||| |||||||    
T  70724 cagataagggtggaaagaattgttttcctgaacctaggcagattgcatgacggtgctgacccctgtgtagtattttgatcataacgtacgttgtggatgt 70823  T
Q  123 cttcttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaaatggtt-aaac 221  Q
     |    |||||||||||||||||| || ||  ||||||  |||||||||||||||| ||||||| || |||| || ||||||| ||||||||||| |||     
T  70824 atgaaggaggtgagaccaaagccaatggaacgctaacacgcatacctacaactttcatgtttacaccgaaactcaattcaaaacggaaaatggttaaaaa 70923  T
Q  222 aaaacaatttttat---ttgttaagttgagctgacaaaatcggggcccga 268  Q
    |||||| |||||||   ||||||||||| ||| ||||||| |||| ||||    
T  70924 aaaacagtttttatttgttgttaagttgggctaacaaaatggggggccga 70973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 11557770 - 11557949
Alignment:
Q  23 cagagaagagtggaaagatttgtttccctgaacctaggcagatcgcataaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatgt 122  Q
    |||||||  ||||||||||| |||| | ||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||| ||||||| | ||    
T  11557770 cagagaatggtggaaagattggttttcttgaacctaggcagatcgcatggccgtgctgacccctgtgtagtattttgatcataactcacgttttgaacgt 11557869  T
Q  123 cttcttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttca 202  Q
      |||||| |||||| ||||||||||| ||  ||||||| ||||||||||||||   ||||||| |||| ||||| ||||    
T  11557870 tctcttgaagtgagatcaaagccattggaaagctaacatccatacctacaacttgaatgtttacaccaagacccacttca 11557949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 32 - 186
Target Start/End: Complemental strand, 18219031 - 18218877
Alignment:
Q  32 gtggaaagatttgtttccctgaacctaggcagatcgcataaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatgtcttcttgag 131  Q
    ||||||||||| |||| | |||| ||||| |||| ||||  ||||||||||||||||| |||||||||||||||||   |||| ||||| ||||||||||    
T  18219031 gtggaaagattggttttcttgaagctagggagattgcatggccgtgctgacccctgtgtagtattttgatcataacgtacgttatggatttcttcttgag 18218932  T
Q  132 gtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttac 186  Q
    |||||||||||||||||| ||  ||||||| |||||||||||||||| |||||||    
T  18218931 gtgagaccaaagccattgtaaagctaacattcatacctacaactttcatgtttac 18218877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 54 - 201
Target Start/End: Original strand, 11939973 - 11940120
Alignment:
Q  54 acctaggcagatcgcataaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatgtcttcttgaggtgagaccaaagccattgaaat 153  Q
    |||||||||||| |||| |||||| ||||||||||| | ||||||||||||||||| || | | |||||||| | |||||||||  ||| |||||| ||     
T  11939973 acctaggcagattgcatgaccgtgttgacccctgtgtattattttgatcataactcacgatgtagatgtcttatggaggtgagataaaaaccattggaaa 11940072  T
Q  154 tctaacatacatacctacaactttcgtgtttacgccaaaacccagttc 201  Q
     || |||| |||||||||||||||  |||||||  |||||||||||||    
T  11940073 gcttacatccatacctacaacttttatgtttacagcaaaacccagttc 11940120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 16283682 - 16283584
Alignment:
Q  23 cagagaagagtggaaagatttgtttccctgaacctaggcagatcgcataaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatg 121  Q
    |||||||| ||||||||||| |||| ||| ||| ||| |||||||| | ||||||||||| |||||| |||||||||||||||| || |||| ||||||    
T  16283682 cagagaagggtggaaagattggttttcctaaacttagacagatcgcctgaccgtgctgacacctgtgtagtattttgatcataaatcacgttgtggatg 16283584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 43208273 - 43208329
Alignment:
Q  252 acaaaatcggggcccgatttttgtcaaatcaaaacactcaaattttgaaccaaaatcg 309  Q
    ||||||||  ||||||||||||||||||||||||| | ||||||||||||||||||||    
T  43208273 acaaaatcatggcccgatttttgtcaaatcaaaactc-caaattttgaaccaaaatcg 43208329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 79 - 202
Target Start/End: Original strand, 8808284 - 8808407
Alignment:
Q  79 tgacccctgtgcagtattttgatcataactcccgttttggatgtcttcttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttc 178  Q
    |||||| |||| ||||||||||||||||| |  |||| |||  |||  ||||||||| || | |||||||| ||   |||||| ||||||||||| ||||    
T  8808284 tgacccatgtgtagtattttgatcataacccgagtttcggacatctgattgaggtgaaactagagccattggaaagataacatccatacctacaattttc 8808383  T
Q  179 gtgtttacgccaaaacccagttca 202  Q
     ||||||| |||| ||| ||||||    
T  8808384 atgtttacaccaagacctagttca 8808407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 9923839 - 9923882
Alignment:
Q  168 ctacaactttcgtgtttacgccaaaacccagttcaaaagggaaa 211  Q
    ||||||||||| ||||||| |||||||||||||||||| |||||    
T  9923839 ctacaactttcatgtttacaccaaaacccagttcaaaatggaaa 9923882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 371
Target Start/End: Original strand, 12230967 - 12231010
Alignment:
Q  328 agggttccgcttctctccctctgcttttcttctcccttttctct 371  Q
    ||||||| |||||||||||| ||||| |||||||||||||||||    
T  12230967 agggttctgcttctctccctttgcttctcttctcccttttctct 12231010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 17418904 - 17418955
Alignment:
Q  71 aaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatgt 122  Q
    ||||||||||||| ||||| |||||||||||||||||||  ||||| |||||    
T  17418904 aaccgtgctgacctctgtgtagtattttgatcataactcaagtttttgatgt 17418955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 186
Target Start/End: Original strand, 19857955 - 19857986
Alignment:
Q  155 ctaacatacatacctacaactttcgtgtttac 186  Q
    ||||||||||||||||||||||||||||||||    
T  19857955 ctaacatacatacctacaactttcgtgtttac 19857986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 3515577 - 3515611
Alignment:
Q  155 ctaacatacatacctacaactttcgtgtttacgcc 189  Q
    ||||||| |||||||||||||||||||||||||||    
T  3515577 ctaacatccatacctacaactttcgtgtttacgcc 3515611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 8808870 - 8808936
Alignment:
Q  325 actagggttccgcttctctccctctgcttttcttctcccttttctctgattagcaaaactaatttct 391  Q
    ||||||||||||| ||||||| ||||||| | || || ||||||| |||| ||||||||| ||||||    
T  8808870 actagggttccgcctctctccttctgcttcttttatctcttttctttgatcagcaaaactgatttct 8808936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 12033384 - 12033310
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaa 211  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| | ||||| |||||||||||||||||| |||||    
T  12033384 accaaagccattggaaagctaacaaaattatctacaactttcatttttacaccaaaacccagttcaaaacggaaa 12033310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 45314777 - 45314712
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttca 202  Q
    |||||||||| || || ||||||| |  || ||||||||||| ||||||| |||||||||||||||    
T  45314777 accaaagccactggaaatctaacacaattatctacaactttcatgtttacaccaaaacccagttca 45314712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 16277736 - 16277700
Alignment:
Q  168 ctacaactttcgtgtttacgccaaaacccagttcaaa 204  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  16277736 ctacaactttcatgtttacaccaaaacccagttcaaa 16277700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 22725305 - 22725269
Alignment:
Q  168 ctacaactttcgtgtttacgccaaaacccagttcaaa 204  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  22725305 ctacaactttcatgtttacaccaaaacccagttcaaa 22725269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 50221950 - 50221882
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaa 205  Q
    ||||||||||||| ||  | |||| || || ||||||||||| | ||||| ||||||||||||||||||    
T  50221950 accaaagccattggaaagccaacaaacttatctacaactttcatttttacaccaaaacccagttcaaaa 50221882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 53387346 - 53387310
Alignment:
Q  168 ctacaactttcgtgtttacgccaaaacccagttcaaa 204  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  53387346 ctacaactttcatgtttacaccaaaacccagttcaaa 53387310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 10389473 - 10389646
Alignment:
Q  27 gaagagtggaaagatttgtttccctgaacctaggcagatcgcataaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatgtcttc 126  Q
    |||| ||||||||||| | || ||||||||||||| ||| |||| ||||||||||||| |||| ||||||||||||||||||| |||| |||||||||      
T  10389473 gaagggtggaaagattgggtttcctgaacctaggcggattgcatgaccgtgctgacccatgtgtagtattttgatcataactcacgttgtggatgtctga 10389572  T
Q  127 ttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagtt 200  Q
    |  ||||||||||||| |||||| || | |||||| ||||  |||||||||| ||||||| |||||||||||||    
T  10389573 tgaaggtgagaccaaatccattggaaatttaacatccataattacaactttcatgtttacaccaaaacccagtt 10389646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 268
Target Start/End: Complemental strand, 51625436 - 51625295
Alignment:
Q  127 ttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaaatggttaaacaaaac 226  Q
    ||||||||| || |||||||||| || ||||||| ||||||||| ||||||| |||||   || ||| ||| |||  || |||||||| ||||| | |||    
T  51625436 ttgaggtgaaacaaaagccattggaaatctaacacacatacctaaaactttcatgtttcgaccgaaatccacttcggaacggaaaatgcttaaaaacaac 51625337  T
Q  227 aatttttatttgttaagttgagctgacaaaatcggggcccga 268  Q
    | ||||| |||||||||||| ||||| |||||| ||| ||||    
T  51625336 agtttttgtttgttaagttgtgctgagaaaatcaggggccga 51625295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 41373023 - 41373097
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaa 211  Q
    ||||||||||||| || ||||||| |  || ||||||||||| | ||||| |||||||||||||||||| |||||    
T  41373023 accaaagccattggaaatctaacaaaattatctacaactttcatttttacaccaaaacccagttcaaaacggaaa 41373097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 7792292 - 7792224
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaa 205  Q
    ||||||||||||| || ||||||| |  || ||||||||||| ||||||| |||| |||||||||||||    
T  7792292 accaaagccattggaaatctaacaaaattatctacaactttcatgtttacaccaagacccagttcaaaa 7792224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 186
Target Start/End: Complemental strand, 9044790 - 9044759
Alignment:
Q  155 ctaacatacatacctacaactttcgtgtttac 186  Q
    ||||||||||||||||||||||||||||||||    
T  9044790 ctaacatacatacctacaactttcgtgtttac 9044759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 21841318 - 21841392
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaa 211  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| | ||||| |||||||||||||||||| |||||    
T  21841318 accaaagccattggaaagctaacaaaattatctacaactttcatttttacaccaaaacccagttcaaaacggaaa 21841392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 21922902 - 21922828
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaa 211  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| | ||||| |||||||||||||||||| |||||    
T  21922902 accaaagccattggaaagctaacaaaattatctacaactttcatttttacaccaaaacccagttcaaaacggaaa 21922828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 24853251 - 24853142
Alignment:
Q  92 gtattttgatcataactcccgttttggatgtcttcttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaa 191  Q
    ||||||| ||||||| || |||| |||||||||  ||||||| | |||||| ||| || ||  ||||||| |||||||||||  ||  ||||||| ||||    
T  24853251 gtattttcatcataattcacgttgtggatgtctagttgaggtcaaaccaaaaccaatggaaagctaacattcatacctacaatctttatgtttacaccaa 24853152  T
Q  192 aacccagttc 201  Q
     |||||||||    
T  24853151 tacccagttc 24853142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 127 - 289
Target Start/End: Original strand, 132249 - 132411
Alignment:
Q  127 ttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaaatggttaaacaaaac 226  Q
    ||||||||| |||||| |||||| ||  |||||||||||||||| ||||||| |||||   |||||| |||||||  || |||||||||||||| | |||    
T  132249 ttgaggtgaaaccaaatccattggaaagctaacatacatacctaaaactttcatgttttgaccaaaatccagttcggaacggaaaatggttaaaaacaac 132348  T
Q  227 aatttttatttgttaagttgagctgacaaaatcggggcccgatttttgtcaaatcaaaacact 289  Q
    | ||||| |||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||||    
T  132349 agtttttgtttgttaagttgtgctgataaaatcggggcccgatttttgtcgaatgaaaacact 132411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 53813 - 53989
Alignment:
Q  24 agagaagagtggaaagatttgtttccctgaacctaggcagatcgcataaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatgtc 123  Q
    ||||||| ||| ||||||| |||| |||||||||||||| ||||||| ||| | ||||||| |||| ||||||||||| ||||||| |||| ||||||||    
T  53813 agagaagggtgaaaagattggttttcctgaacctaggcatatcgcatgaccattctgacccttgtgtagtattttgataataactcacgttgtggatgtc 53912  T
Q  124 ttcttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagtt 200  Q
    |||||||||| | | || ||||| || ||  ||||| | |||||||||||||||| ||||||| |||| ||||||||    
T  53913 ttcttgaggtaatatcagagccaatggaaagctaacgtccatacctacaactttcatgtttacaccaagacccagtt 53989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 127 - 289
Target Start/End: Complemental strand, 26625 - 26463
Alignment:
Q  127 ttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaaatggttaaacaaaac 226  Q
    ||||||||| | |||| |||||||||  |||||| ||||||||| ||||||| |||||   || ||| |||||||  || |||||||||||||| | |||    
T  26625 ttgaggtgaaaacaaatccattgaaaagctaacagacatacctaaaactttcatgttttgaccgaaatccagttcggaacggaaaatggttaaaaacaac 26526  T
Q  227 aatttttatttgttaagttgagctgacaaaatcggggcccgatttttgtcaaatcaaaacact 289  Q
    | ||||| |||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||    
T  26525 agtttttgtttgttaagttgtgctgataaaatcggggcccgatttttgtcgaatcaaaacact 26463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 96 - 291
Target Start/End: Original strand, 1676 - 1871
Alignment:
Q  96 tttgatcataactcccgttttggatgtcttcttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacc 195  Q
    ||||||||||||||  ||| | || ||||  ||||||||| ||||||||||||| ||  ||||||  || ||| | ||||||| |||||   || ||| |    
T  1676 tttgatcataactcaagttgtagaggtctggttgaggtgaaaccaaagccattggaaagctaacacgcacaccgaaaactttcatgtttcgaccgaaatc 1775  T
Q  196 cagttcaaaagggaaaatggttaaacaaaacaatttttatttgttaagttgagctgacaaaatcggggcccgatttttgtcaaatcaaaacactca 291  Q
    ||||||  || |||||||  ||||| | |||| ||||| |||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||    
T  1776 cagttcggaacggaaaatacttaaaaacaacagtttttgtttgttaagttgtgctgacaaaatcggggcccgatttttgttgaatcaaaacactca 1871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 127 - 268
Target Start/End: Complemental strand, 17959730 - 17959589
Alignment:
Q  127 ttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaaatggttaaacaaaac 226  Q
    ||||||||| ||||||| ||||| ||  |||||| ||||||||| ||||||| |||||   || ||| || |||| ||| |||||||||||||| | |||    
T  17959730 ttgaggtgaaaccaaagtcattggaaagctaacacacatacctaaaactttcatgtttctaccgaaatcccgttcgaaacggaaaatggttaaaaacaac 17959631  T
Q  227 aatttttatttgttaagttgagctgacaaaatcggggcccga 268  Q
    ||||||| |||||||||||  |||||||||||||||| ||||    
T  17959630 aatttttgtttgttaagttatgctgacaaaatcgggggccga 17959589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 326 - 391
Target Start/End: Original strand, 19186939 - 19187003
Alignment:
Q  326 ctagggttccgcttctctccctctgcttttcttctcccttttctctgattagcaaaactaatttct 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  19186939 ctagggttccgcttctctccctctgcttttcttctcccttttctct-attagcaaaactgatttct 19187003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 17792743 - 17792898
Alignment:
Q  23 cagagaagagtggaaagatttgtttccctgaacctaggcagatcgcataaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatgt 122  Q
    |||||||  ||||||||||| |||||| |||||||||| |||| |||| |||| |||||| |||||| ||||||||||| ||||||  |||| |  ||||    
T  17792743 cagagaaaggtggaaagattggtttccatgaacctaggaagattgcatgaccgagctgacacctgtgtagtattttgattataactaacgttgtatatgt 17792842  T
Q  123 cttcttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttc 178  Q
     || | || |||| ||||||||||||| ||  ||||||| |||||||| |||||||    
T  17792843 attatggaagtgataccaaagccattggaaaactaacatccatacctaaaactttc 17792898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 19101183 - 19101338
Alignment:
Q  23 cagagaagagtggaaagatttgtttccctgaacctaggcagatcgcataaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatgt 122  Q
    |||||||  ||||||||||| |||||| |||||||||| |||| |||| |||| |||||| |||||| ||||||||||| ||||||  |||| |  ||||    
T  19101183 cagagaaaggtggaaagattggtttccatgaacctaggaagattgcatgaccgagctgacacctgtgtagtattttgattataactaacgttgtatatgt 19101282  T
Q  123 cttcttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttc 178  Q
     || | || |||| ||||||||||||| ||  ||||||| |||||||| |||||||    
T  19101283 attatggaagtgataccaaagccattggaaaactaacatccatacctaaaactttc 19101338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 391
Target Start/End: Complemental strand, 5941691 - 5941625
Alignment:
Q  325 actagggttccgcttctctccctctgcttttcttctcccttttctctgattagcaaaactaatttct 391  Q
    ||||||||| ||||||||||||| ||||| |||||||||||||||||||| ||||||||| ||||||    
T  5941691 actagggtttcgcttctctccctatgcttctcttctcccttttctctgatcagcaaaactgatttct 5941625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 22841829 - 22841651
Alignment:
Q  23 cagagaagagtggaaagatttgtttccctgaacctaggcagatcgcataaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatgt 122  Q
    |||||||| ||||||| | | | || ||||||||||||||||| |||  || ||||||| || ||||  || |||| |||||| ||| |||| | |||||    
T  22841829 cagagaagggtggaaaaaatggatttcctgaacctaggcagattgcacgactgtgctgaaccatgtgtggtgttttaatcatacctcacgttatagatgt 22841730  T
Q  123 cttcttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttc 201  Q
    ||  |||||||||||||| ||| |||||||  ||||||  ||||||||||||||||  |||||| |||  |||||||||    
T  22841729 ctggttgaggtgagaccatagcgattgaaaagctaacacccatacctacaactttcaagtttacaccaggacccagttc 22841651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 265
Target Start/End: Complemental strand, 14058223 - 14058085
Alignment:
Q  127 ttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaaatggttaaacaaaac 226  Q
    ||||||||| ||||||||||||||||  |||||| || |||| | ||||||  |||||   || ||| |||||||  || | |||||||||||| | |||    
T  14058223 ttgaggtgaaaccaaagccattgaaaacctaacacacgtaccgaaaactttgatgtttcgaccgaaatccagttcggaacgaaaaatggttaaaaacaac 14058124  T
Q  227 aatttttatttgttaagttgagctgacaaaatcggggcc 265  Q
    | ||||| |||||||||||| | ||||||||||||||||    
T  14058123 attttttgtttgttaagttgtgttgacaaaatcggggcc 14058085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 382
Target Start/End: Complemental strand, 21100650 - 21100593
Alignment:
Q  325 actagggttccgcttctctccctctgcttttcttctcccttttctctgattagcaaaa 382  Q
    |||||||||||||||||||||| |||||| |||||||||||| ||||||| |||||||    
T  21100650 actagggttccgcttctctccccctgcttctcttctccctttactctgatcagcaaaa 21100593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 25784811 - 25784690
Alignment:
Q  76 tgctgacccctgtgcagtattttgatcataactcccgttttggatgtcttcttgaggtgagaccaaagccattgaaattctaacatacatacctacaact 175  Q
    ||||||||| |||| |||| ||| |||||||||| ||||||||||||||| |||| | ||||| | | |||||| ||   |||||| |||||||||||||    
T  25784811 tgctgacccatgtgtagtaatttaatcataactcacgttttggatgtcttattgatgcgagactagatccattggaaagataacattcatacctacaact 25784712  T
Q  176 ttcgtgtttacgccaaaaccca 197  Q
     || ||||||| |||| |||||    
T  25784711 ctcatgtttacaccaagaccca 25784690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 384
Target Start/End: Original strand, 17793501 - 17793559
Alignment:
Q  325 actagggttccgcttctctccctctgcttttcttctcccttttctctgattagcaaaact 384  Q
    |||| |||||||||||||| |||||||| |||||||||||||||||| || |||||||||    
T  17793501 actacggttccgcttctcttcctctgctattcttctcccttttctct-atcagcaaaact 17793559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 384
Target Start/End: Original strand, 19101941 - 19101999
Alignment:
Q  325 actagggttccgcttctctccctctgcttttcttctcccttttctctgattagcaaaact 384  Q
    |||| |||||||||||||| |||||||| |||||||||||||||||| || |||||||||    
T  19101941 actacggttccgcttctcttcctctgctattcttctcccttttctct-atcagcaaaact 19101999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 36528532 - 36528577
Alignment:
Q  155 ctaacatacatacctacaactttcgtgtttacgccaaaacccagtt 200  Q
    ||||||| |||||||||||||||||||||||| || ||||||||||    
T  36528532 ctaacatccatacctacaactttcgtgtttacacctaaacccagtt 36528577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 10554879 - 10554946
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaa 204  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| ||||||| |||||||||||||||||    
T  10554879 accaaagccattggaaagctaacaaaattatctacaactttcatgtttacaccaaaacccagttcaaa 10554946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 291
Target Start/End: Complemental strand, 17959584 - 17959545
Alignment:
Q  252 acaaaatcggggcccgatttttgtcaaatcaaaacactca 291  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  17959584 acaaaattggggcccgatttttgtcgaatcaaaacactca 17959545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 186
Target Start/End: Original strand, 27165822 - 27165853
Alignment:
Q  155 ctaacatacatacctacaactttcgtgtttac 186  Q
    ||||||||||||||||||||||||||||||||    
T  27165822 ctaacatacatacctacaactttcgtgtttac 27165853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 33564772 - 33564815
Alignment:
Q  168 ctacaactttcgtgtttacgccaaaacccagttcaaaagggaaa 211  Q
    ||||||||||| ||||||| |||||||||||||||||| |||||    
T  33564772 ctacaactttcatgtttacaccaaaacccagttcaaaacggaaa 33564815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 186
Target Start/End: Complemental strand, 53301096 - 53301065
Alignment:
Q  155 ctaacatacatacctacaactttcgtgtttac 186  Q
    ||||||||||||||||||||||||||||||||    
T  53301096 ctaacatacatacctacaactttcgtgtttac 53301065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 7780957 - 7780883
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaa 211  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| | ||||| |||||||||||||||||| |||||    
T  7780957 accaaagccattggaaagctaacaaaattatctacaactttcatttttacaccaaaacccagttcaaaacggaaa 7780883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 391
Target Start/End: Complemental strand, 15958213 - 15958163
Alignment:
Q  341 tctccctctgcttttcttctcccttttctctgattagcaaaactaatttct 391  Q
    ||||| ||| ||| |||| || |||||||||||||||||||||||||||||    
T  15958213 tctccttcttcttctcttatctcttttctctgattagcaaaactaatttct 15958163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 15978084 - 15978158
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaa 211  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| | ||||| |||||||||||||||||| |||||    
T  15978084 accaaagccattggaaagctaacaaaattatctacaactttcatttttacaccaaaacccagttcaaaacggaaa 15978158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 16282544 - 16282512
Alignment:
Q  154 tctaacatacatacctacaactttcgtgtttac 186  Q
    |||||||| ||||||||||||||||||||||||    
T  16282544 tctaacattcatacctacaactttcgtgtttac 16282512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 127 - 291
Target Start/End: Complemental strand, 17220 - 17056
Alignment:
Q  127 ttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaaatggttaaacaaaac 226  Q
    ||||||| | |||||| |||||| ||  |||||| |||| |||| ||||||| |||||   || ||| |||||||  || ||||||| |||| | | |||    
T  17220 ttgaggtaaaaccaaatccattggaaagctaacagacatgcctaaaactttcatgttttgaccgaaatccagttcggaatggaaaatcgttataaagaac 17121  T
Q  227 aatttttatttgttaagttgagctgacaaaatcggggcccgatttttgtcaaatcaaaacactca 291  Q
    | ||||| |||||||||||| ||||| ||||||||||||| ||||||||| ||||||||||||||    
T  17120 agtttttgtttgttaagttgtgctgataaaatcggggcccaatttttgtcgaatcaaaacactca 17056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 127 - 291
Target Start/End: Complemental strand, 26278 - 26114
Alignment:
Q  127 ttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaaatggttaaacaaaac 226  Q
    ||||||| | |||||| |||||| ||  |||||| |||| |||| ||||||| |||||   || ||| |||||||  || ||||||| |||| | | |||    
T  26278 ttgaggtaaaaccaaatccattggaaagctaacagacatgcctaaaactttcatgttttgaccgaaatccagttcggaatggaaaatcgttataaagaac 26179  T
Q  227 aatttttatttgttaagttgagctgacaaaatcggggcccgatttttgtcaaatcaaaacactca 291  Q
    | ||||| |||||||||||| ||||| ||||||||||||| ||||||||| ||||||||||||||    
T  26178 agtttttgtttgttaagttgtgctgataaaatcggggcccaatttttgtcgaatcaaaacactca 26114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1559 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold1559
Description:

Target: scaffold1559; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 66 - 186
Target Start/End: Complemental strand, 738 - 618
Alignment:
Q  66 cgcataaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatgtcttcttgaggtgagaccaaagccattgaaattctaacatacat 165  Q
    |||| ||| |||||||||| |||| |||||||||||||||||||  ||| | ||||| |  ||||||| | |||||| |||||| || ||||||| ||||    
T  738 cgcacaactgtgctgacccatgtgtagtattttgatcataactcatgttgtagatgtttgattgaggttaaaccaaaaccattggaaatctaacacacat 639  T
Q  166 acctacaactttcgtgtttac 186  Q
    ||||||||||||| |||||||    
T  638 acctacaactttcatgtttac 618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 3217 - 3302
Alignment:
Q  23 cagagaagagtggaaagatttgtttccctgaacctaggcagatcgcataaccgtgctgacccctgtgcagtattttgatcataact 108  Q
    ||||||||||||||||||||  ||| ||||||| | |||||||||||| ||| ||||||||||||||  ||||||  |||||||||    
T  3217 cagagaagagtggaaagattgattttcctgaacatcggcagatcgcatgaccatgctgacccctgtgtggtatttcaatcataact 3302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 14034 - 14132
Alignment:
Q  23 cagagaagagtggaaagatttgtttccctgaacctaggcagatcgcataaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatg 121  Q
    |||||||| ||||||||||| |||| ||| ||| ||| |||||||| | ||||||||||  ||||||  ||||||||||||||| || |||| ||||||    
T  14034 cagagaagggtggaaagattggttttcctaaacttagacagatcgcctgaccgtgctgatacctgtgtggtattttgatcataaatcacgttgtggatg 14132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 201
Target Start/End: Original strand, 9799 - 9908
Alignment:
Q  92 gtattttgatcataactcccgttttggatgtcttcttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaa 191  Q
    |||||||||||||||||| |||| |||||||||  ||||||| | |||| || || || || |||||||| || || |||||||||| ||||||| ||||    
T  9799 gtattttgatcataactcacgttgtggatgtctgattgaggtcaaaccatagacaatggaaatctaacattcagacttacaactttcatgtttacaccaa 9898  T
Q  192 aacccagttc 201  Q
     ||| |||||    
T  9899 gacctagttc 9908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 16190 - 16227
Alignment:
Q  252 acaaaatcggggcccgatttttgtcaaatcaaaacact 289  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  16190 acaaaatcggggcccgatttttgtcgaatcaaaacact 16227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 3477 - 3544
Alignment:
Q  325 actagggttccgcttctctccctctgcttttcttctcccttttctctgattag-caaaactaatttct 391  Q
    |||||||||| | |||||||||| ||||  |||||||||||||||||||| || ||||||| ||||||    
T  3477 actagggttcaggttctctccctatgctcctcttctcccttttctctgatcagccaaaactgatttct 3544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 159390 - 159323
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaa 204  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| ||||||| |||||||||||||||||    
T  159390 accaaagccattggaaagctaacaaaattatctacaactttcatgtttacaccaaaacccagttcaaa 159323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 139641 - 139562
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaaatggt 216  Q
    ||||||||||||  ||  ||||| | ||||||||| |||||| ||||||| || | ||||||||||||| ||||||||||    
T  139641 accaaagccattagaaagctaactttcatacctacgactttcatgtttacacccagacccagttcaaaacggaaaatggt 139562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 29763278 - 29763235
Alignment:
Q  168 ctacaactttcgtgtttacgccaaaacccagttcaaaagggaaa 211  Q
    ||||||||||| ||||||| |||||||||||||||||| |||||    
T  29763278 ctacaactttcatgtttacaccaaaacccagttcaaaacggaaa 29763235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 4541984 - 4541910
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaa 211  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| | ||||| |||||||||||||||||| |||||    
T  4541984 accaaagccattggaaagctaacaaaattatctacaactttcatttttacaccaaaacccagttcaaaacggaaa 4541910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 17861997 - 17861960
Alignment:
Q  72 accgtgctgacccctgtgcagtattttgatcataactc 109  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  17861997 accgtgctgacctctgtgtagtattttgatcataactc 17861960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 21579616 - 21579579
Alignment:
Q  168 ctacaactttcgtgtttacgccaaaacccagttcaaaa 205  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  21579616 ctacaactttcatgtttacaccaaaacccagttcaaaa 21579579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 24485653 - 24485580
Alignment:
Q  138 ccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaa 211  Q
    |||||||||||| ||  |||||| |  || ||||||||||| | ||||| |||||||||||||||||| |||||    
T  24485653 ccaaagccattggaaagctaacaaaattatctacaactttcatttttacaccaaaacccagttcaaaacggaaa 24485580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 16401324 - 16401284
Alignment:
Q  155 ctaacatacatacctacaactttcgtgtttacgccaaaacc 195  Q
    ||||||| |||||||||||||||||||||||| || |||||    
T  16401324 ctaacatccatacctacaactttcgtgtttacacctaaacc 16401284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 19936694 - 19936662
Alignment:
Q  154 tctaacatacatacctacaactttcgtgtttac 186  Q
    |||||||| ||||||||||||||||||||||||    
T  19936694 tctaacattcatacctacaactttcgtgtttac 19936662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 27472203 - 27472171
Alignment:
Q  154 tctaacatacatacctacaactttcgtgtttac 186  Q
    |||||||| ||||||||||||||||||||||||    
T  27472203 tctaacatccatacctacaactttcgtgtttac 27472171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 24617363 - 24617296
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaa 204  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| ||||||| |||||||||||||||||    
T  24617363 accaaagccattggaaagctaacaaaattatctacaactttcatgtttacaccaaaacccagttcaaa 24617296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 24713594 - 24713527
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaa 204  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| ||||||| |||||||||||||||||    
T  24713594 accaaagccattggaaagctaacaaaattatctacaactttcatgtttacaccaaaacccagttcaaa 24713527  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 24746622 - 24746555
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaa 204  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| ||||||| |||||||||||||||||    
T  24746622 accaaagccattggaaagctaacaaaattatctacaactttcatgtttacaccaaaacccagttcaaa 24746555  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 24760980 - 24761047
Alignment:
Q  325 actagggttccgcttctctccctctgcttttcttctcccttttctctgattag-caaaactaatttct 391  Q
    |||||||||| | |||||||||| ||||  |||||||||||||||||||| || ||||||| ||||||    
T  24760980 actagggttcaggttctctccctatgctcctcttctcccttttctctgatcagccaaaactgatttct 24761047  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 25791257 - 25791308
Alignment:
Q  71 aaccgtgctgacccctgtgcagtattttgatcataactcccgttttggatgt 122  Q
    ||||||||||||| ||||| |||||||||||||||||||  ||||| |||||    
T  25791257 aaccgtgctgacctctgtgtagtattttgatcataactcaagtttttgatgt 25791308  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 10732551 - 10732477
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaa 211  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| | ||||| |||||||||||||||||| |||||    
T  10732551 accaaagccattggaaagctaacaaaattatctacaactttcatttttacaccaaaacccagttcaaaacggaaa 10732477  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 24668606 - 24668570
Alignment:
Q  168 ctacaactttcgtgtttacgccaaaacccagttcaaa 204  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  24668606 ctacaactttcatgtttacaccaaaacccagttcaaa 24668570  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 24738375 - 24738339
Alignment:
Q  168 ctacaactttcgtgtttacgccaaaacccagttcaaa 204  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  24738375 ctacaactttcatgtttacaccaaaacccagttcaaa 24738339  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 24751144 - 24751108
Alignment:
Q  168 ctacaactttcgtgtttacgccaaaacccagttcaaa 204  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  24751144 ctacaactttcatgtttacaccaaaacccagttcaaa 24751108  T

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Target: scaffold0363 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 9793 - 9867
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaa 211  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| | ||||| |||||||||||||||||| |||||    
T  9793 accaaagccattggaaagctaacaaaattatctacaactttcatttttacaccaaaacccagttcaaaatggaaa 9867  T

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Target: scaffold0317 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 6740 - 6690
Alignment:
Q  136 gaccaaagccattgaaattctaacatacatacctacaactttcgtgtttac 186  Q
    |||||| | ||||| || |||||||| ||||||||||||||||||||||||    
T  6740 gaccaacggcattggaaatctaacatccatacctacaactttcgtgtttac 6690  T

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Target: scaffold0306 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 11144 - 11094
Alignment:
Q  136 gaccaaagccattgaaattctaacatacatacctacaactttcgtgtttac 186  Q
    |||||| | ||||| || |||||||| ||||||||||||||||||||||||    
T  11144 gaccaacggcattggaaatctaacatccatacctacaactttcgtgtttac 11094  T

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Target: scaffold0254 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 21300 - 21374
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaa 211  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| | ||||| |||||||||||||||||| |||||    
T  21300 accaaagccattggaaagctaacaaaattatctacaactttcatttttacaccaaaacccagttcaaaacggaaa 21374  T

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Target: scaffold1043 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 1178 - 1141
Alignment:
Q  72 accgtgctgacccctgtgcagtattttgatcataactc 109  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  1178 accgtgctgacctctgtgtagtattttgatcataactc 1141  T

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Target: scaffold0091 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 30817 - 30910
Alignment:
Q  127 ttgaggtgagaccaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaagggaaaatggttaaa 220  Q
    |||| |||| |||||| |||||| ||  |||||| ||||||||| ||||||| |||||   || ||| |||||||  |||||||||||||||||    
T  30817 ttgaagtgaaaccaaatccattggaaagctaacagacatacctaaaactttcatgttttgaccgaaatccagttcggaagggaaaatggttaaa 30910  T

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Target: scaffold0151 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 9667 - 9735
Alignment:
Q  137 accaaagccattgaaattctaacatacatacctacaactttcgtgtttacgccaaaacccagttcaaaa 205  Q
    ||||||||||||| ||  |||||| |  || ||||||||||| ||||||| |||||||||| |||||||    
T  9667 accaaagccattggaaagctaacaaaattatctacaactttcatgtttacaccaaaacccaattcaaaa 9735  T

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Target: scaffold0017 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 26158 - 26194
Alignment:
Q  168 ctacaactttcgtgtttacgccaaaacccagttcaaa 204  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  26158 ctacaactttcatgtttacaccaaaacccagttcaaa 26194  T

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