View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2726_low_11 (Length: 396)
Name: NF2726_low_11
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2726_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 14 - 378
Target Start/End: Original strand, 42902724 - 42903088
Alignment:
| Q |
14 |
atcatctagaaagtgtatgaattacctctcgctaccctggtttctcaaacgtttcagcacatcttcttcgccaatgagtcgtctgaccaaacctttaaat |
113 |
Q |
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| T |
42902724 |
atcatctagaaagtgtatgaattacctctcgctaccctggtttctcaaacgtttcagcacatcttcttcgccaatgagtcgtctgaccaaacctttaaat |
42902823 |
T |
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| Q |
114 |
tgaccaaaaattcaattcagactgaatcatgatcatagatatagtgatcagtgataatatacaaacacttatgcatgctacataactctttacatagata |
213 |
Q |
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| T |
42902824 |
tgaccaaaaattcaattcagactgaatcatgatcatagatatagtgatcagtgataatatacaaacacttatggatgctacataactctttacatagata |
42902923 |
T |
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| Q |
214 |
ggacatatgtaacatgagattcattctttaaataacttattaccattggtataatcgcggcaatcgttaacaccgattctcaaatctgtttcccattttt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42902924 |
ggacatatgtaacatgagattcattctttaaataacttattaccattggtataatcgcggcaatcgttgacaccgattctcaaatctgtttcccattttt |
42903023 |
T |
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| Q |
314 |
tgttgaattcacttgctatttccatagcatctgcttctgcagatccaactagccaacatttgctt |
378 |
Q |
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| T |
42903024 |
tgttgaattcacttgctatttccacagcatctgcttctgcatatccaactagccaacatttgctt |
42903088 |
T |
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