View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2726_low_14 (Length: 381)
Name: NF2726_low_14
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2726_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 363
Target Start/End: Original strand, 510666 - 511009
Alignment:
| Q |
17 |
agatcgaaatataaaaatgtaactttcgaaaaagtttttgtttcattataattgctactttgaatgatgcaaccacatcatttaattgtgtacattatcc |
116 |
Q |
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| T |
510666 |
agatcgaaatataaaaatgtaacttttgaaaaagtttttgtttcattataattgctactttgaatgatacaaccacatcatttaattgt--acattatcc |
510763 |
T |
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| Q |
117 |
nnnnnnngataaaatttactttcttttgcctcttccaagaaaacaacccacatcatcatttaagcgtaaatatttaggagctgattttcgccactcttct |
216 |
Q |
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| T |
510764 |
tttttt-gataaaatttactttcttttgcctcttccaagaaaacaacccacatcatcatttaagcgtaaatatttaggagctgattttcgccactcttct |
510862 |
T |
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| Q |
217 |
tcacgtatttgtgcaccaatgattatataccaaactttgtttaagtcctcaagttacataaaataaaatttacactcactattattattaagcacttgat |
316 |
Q |
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| T |
510863 |
tcaagtatttgtgcaccaatgattatataccaaactttgtttaagtcctcaagttacataaaataaaatttacactcactattattattaagcacttgat |
510962 |
T |
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| Q |
317 |
atttcaccacttttgattttatccttcatccaattttaagcgataac |
363 |
Q |
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| T |
510963 |
atttcaccacttttgattttatccttcatccaattttaagcgataac |
511009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 238 - 363
Target Start/End: Original strand, 10069395 - 10069522
Alignment:
| Q |
238 |
attatataccaaactttgtttaagtcctcaagttacataaaataaaatttacact--cactattattattaagcacttgatatttcaccacttttgattt |
335 |
Q |
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| T |
10069395 |
attatataccaaactttgtttaagtcctcatgttacataaaatagaacttacactcacactattattattaagtactttatatttcactgcttttgattt |
10069494 |
T |
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| Q |
336 |
tatccttcatccaattttaagcgataac |
363 |
Q |
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| T |
10069495 |
tatccttcatctaattctaagcaataac |
10069522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 10069247 - 10069321
Alignment:
| Q |
18 |
gatcgaaatataaaaatgtaactttcgaaaaagtttttgtttcattataattgctactttgaatgatgcaaccac |
92 |
Q |
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||||||||||||||||| || ||| ||||||||||||||| ||||||||||||| |||||||||| ||||||| |
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| T |
10069247 |
gatcgaaatataaaaatttagcttctgaaaaagtttttgttctattataattgctaatttgaatgatacaaccac |
10069321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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