View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2726_low_23 (Length: 288)
Name: NF2726_low_23
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2726_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 44 - 240
Target Start/End: Original strand, 40021383 - 40021579
Alignment:
| Q |
44 |
tgaaatttcttattaattgttgaattactatctacaaatagtatgcagggtttagggtgttacaaatatcttcaaagtcaatgtaaaagagcaactacag |
143 |
Q |
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| T |
40021383 |
tgaaatttcttattaattgttgaattactatctacaaatagtatgcagggtttagggtgttacatatatcttcaaaaccaatgtaaaagagcaactacag |
40021482 |
T |
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| Q |
144 |
aagcatgcagagggattctaaagagtcgaaaccaaattatcatttcccgattggaggtcattacgtgccaagctttaaaatatgtgaaaaatgctct |
240 |
Q |
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| T |
40021483 |
aagcatggagagggattccaaatagtcgaaaccaaattatcatttcccgattggaggtcattaggtgccaagctttaaaatctgtgaaaaatgctct |
40021579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 27505092 - 27505050
Alignment:
| Q |
27 |
gttgaagagtaacatcttgaaatttcttattaattgttgaatta |
70 |
Q |
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| T |
27505092 |
gttgaagagtaacatcttgatatttctt-ttaattgttgaatta |
27505050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 11262088 - 11262005
Alignment:
| Q |
24 |
aatgttgaagagtaacatcttgaaat-ttcttattaattgttgaattactatctacaaatagtatgcagggtttagggtgttac |
106 |
Q |
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| T |
11262088 |
aatgttgaagagtaacaacctgaaatgttcttattaattgttgaattattatttaaaaatagtatgcagggtttagggtgttac |
11262005 |
T |
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