View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2726_low_24 (Length: 285)
Name: NF2726_low_24
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2726_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 7899112 - 7899381
Alignment:
| Q |
1 |
aaaaacattacgatatctaggcgtattgacacgtcgggtcaatttaaagcatctattttagtgttttttattagctctgatatttctattagctttgata |
100 |
Q |
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| T |
7899112 |
aaaaacattacgataacgaggcgtattgacacgtcgggtcaatttaaaacatctattttagtgttttttattagctctgatatttctattagctctgata |
7899211 |
T |
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| Q |
101 |
ttgggtgaaagtttcaaccctcatattgggtcatgttcttaatctctctagtcggtgttatgttcaatgccatatcattcaaaactcctcaaatattttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7899212 |
ttgggtgaaagtttcaaccctcatattgggtcatgttcttaatctctctagtcggtgttatgttcaatgccatatcattcaacactcctcaaatattttc |
7899311 |
T |
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| Q |
201 |
aagcttctcaaacaatctcgcgggttcaattagttgtagaaagtttcacaatgcaactgtaggaacaaag |
270 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7899312 |
aagcttctcaaacaatctcgcgggttcaattagttatagaaagtttcacaatgcaactgtaggaacaaag |
7899381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 262
Target Start/End: Original strand, 31212975 - 31213074
Alignment:
| Q |
166 |
aatgccatatcattcaaaactcctcaaatatttt-caagcttctcaaacaa--tctcgcgggttcaattagttgtagaaagtttcacaatgcaactgtag |
262 |
Q |
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|||||||| |||||||||| ||| |||||||| ||||||||||| ||| ||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
31212975 |
aatgccatgtcattcaaaaaaactctaatatttttcaagcttctcagacacagtctcgcgggttcaattagttgcataaagtttcacaatgcaactgtag |
31213074 |
T |
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