View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2726_low_26 (Length: 268)
Name: NF2726_low_26
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2726_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 7218424 - 7218675
Alignment:
| Q |
1 |
agttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgccaaacatggat |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7218424 |
agttaccaaatgtagcatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatcctcatatgccaaacatggat |
7218523 |
T |
|
| Q |
101 |
gcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaactttacacaattcacatgattcattcatatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7218524 |
gcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaactttacacaattcacatgattcattc--atat |
7218621 |
T |
|
| Q |
201 |
atgtacctcataagtgtgaacttacattattatttcttttttgtagtgatggcc |
254 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7218622 |
atgtacttaataagtgtgaacttacattattatttcttttttgtagtgatggcc |
7218675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 7317639 - 7317403
Alignment:
| Q |
1 |
agttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgccaaacatggat |
100 |
Q |
| |
|
|||||||||||| | || |||||||||||||| || | ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7317639 |
agttaccaaatgcaatacagcttctgatgccttgaattcgatggaaagaaaggactgttttgatgtaatgttgattgatgctcatatgccaaacatggat |
7317540 |
T |
|
| Q |
101 |
gcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaactttacacaattcacatgattcattcatatat |
200 |
Q |
| |
|
| |||||||||||||||| |||| ||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7317539 |
gtttatgactttgtccaacatgttaccctactactcaaaattcctgtcattagtaagaatttcttcaactttacacaattcacatgattcattcatatat |
7317440 |
T |
|
| Q |
201 |
atgtacctcataagtgtgaacttacattattatttct |
237 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||| |
|
|
| T |
7317439 |
atgtacttaataagtgtgaacttacattattatttct |
7317403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 7243930 - 7244105
Alignment:
| Q |
1 |
agttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgccaaacatggat |
100 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7243930 |
agttaccaaatgtaacacagcttctgatgccttgaacttgttggaaagaaaggactgtttcgatgtaatgttgattgatcctcatatgccaaacatggat |
7244029 |
T |
|
| Q |
101 |
gcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaactttacac |
176 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7244030 |
gcttatgactttgtccaacatgttaccctacaactcaacattcctgtcattagtaagaatttattcaactttacac |
7244105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 7324409 - 7324256
Alignment:
| Q |
20 |
gcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgccaaacatggatgcttatgactttgtccaaa |
119 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
7324409 |
gcttctgatgctttgtacttgttggaaagaaaggactgttatgatgtaatgttgattgatgctcatatgccgaacatggatgtctatgactttgtccaaa |
7324310 |
T |
|
| Q |
120 |
gtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaacttta |
173 |
Q |
| |
|
|| | ||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
7324309 |
atgctaccctacaactcaacattcctgttattagtaagaatttcttcaacttta |
7324256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 8162139 - 8162314
Alignment:
| Q |
1 |
agttaccaaatgtagtatggcttctgatgccttcaacatgttgga-aagaaaggactgtttcgatgtaatgttgattgatactcatatgccaaacatgga |
99 |
Q |
| |
|
|||||||||||||| | ||||||||||||| || | ||||||| || |||| ||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
8162139 |
agttaccaaatgtaatgtggcttctgatgcattggatttgttggacaaaaaagtgctgtttcgatgtaatgttgattgatgctcgtatgccaaacatgga |
8162238 |
T |
|
| Q |
100 |
tgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaactttaca |
175 |
Q |
| |
|
||| | ||||||||||||| |||| ||||||||| | ||||||| || |||||||||||||| ||||||||| |
|
|
| T |
8162239 |
tgcctgtgactttgtccaacatgtttccctacaacttcagattcctgctatcagtaagaatttatttaactttaca |
8162314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 7244127 - 7244204
Alignment:
| Q |
179 |
ttcacatgattcattcatatatat---gtacctcataagtgtgaacttacattattatttcttttttgtagtgatggc |
253 |
Q |
| |
|
|||| ||||||||||||||||||| || |||| ||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
7244127 |
ttcatatgattcattcatatatatattgttactcagaagtgtggactgacattattatttcttttttgtagtgatggc |
7244204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 7324222 - 7324158
Alignment:
| Q |
189 |
tcattcatatatatgtacctcataagtgtgaacttacattattatttcttttttgtagtgatggc |
253 |
Q |
| |
|
|||||||||| ||||||| | | ||| ||||||| ||||||||||||||| ||| |||||||||| |
|
|
| T |
7324222 |
tcattcatatttatgtacttaagaagcgtgaactgacattattatttcttatttttagtgatggc |
7324158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 8162379 - 8162417
Alignment:
| Q |
215 |
tgtgaacttacattattatttcttttttgtagtgatggc |
253 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
8162379 |
tgtgaactcacattattatttgttttttgtagtgatggc |
8162417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 22766467 - 22766295
Alignment:
| Q |
1 |
agttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgccaaacatggat |
100 |
Q |
| |
|
|||||||||||| | || |||||||| ||||| ||| |||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
22766467 |
agttaccaaatgcaatacagcttctgaagccttgaacttgttggaaagaaaggactgttttgatgtaatgttaattgatgctcatatgccaaacatggat |
22766368 |
T |
|
| Q |
101 |
gcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaacttta |
173 |
Q |
| |
|
|| ||||| ||||| ||| || | | |||||||| |||||||| ||||||||| |||| |||||||||| |
|
|
| T |
22766367 |
gcctatgattttgttcaacatgctaccggtcaactcaatattcctgttattagtaagtatttcttcaacttta |
22766295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University