View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2726_low_28 (Length: 262)

Name: NF2726_low_28
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2726_low_28
NF2726_low_28
[»] chr8 (2 HSPs)
chr8 (24-244)||(9003227-9003447)
chr8 (27-104)||(32225528-32225605)
[»] chr4 (2 HSPs)
chr4 (1-102)||(42048486-42048587)
chr4 (18-103)||(12276670-12276755)
[»] chr5 (3 HSPs)
chr5 (24-104)||(3575526-3575606)
chr5 (27-103)||(8450197-8450273)
chr5 (174-236)||(8450064-8450126)
[»] chr2 (1 HSPs)
chr2 (15-109)||(26496886-26496980)
[»] chr1 (1 HSPs)
chr1 (144-235)||(43438655-43438746)


Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 24 - 244
Target Start/End: Complemental strand, 9003447 - 9003227
Alignment:
Q  24 tactcatgcatgatccaatcagatttttggccatgaggagcacgacctttgtagaaaacaagagtctttctcattccaatcctttttccattactatata 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9003447 tactcatgcatgatccaatcagatttttggccatgaggagcacgacctttgtagaaaacaagagtctttctcattccaatcctttttccattactatata 9003348  T
Q  124 taactttgtcacgaccggtggctttccagaaccctgcagccgtagcgcgattggttcttgttccggttggatacttcttgtctttatggctgaagaagta 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9003347 taactttgtcacgaccggtggctttccagaaccctgcagccgtagcgcgattggttcttgttccggttggatacttcttgtctttatggctgaagaagta 9003248  T
Q  224 ccaatcattctgcggagtcgt 244  Q
    |||||||||||||||||||||    
T  9003247 ccaatcattctgcggagtcgt 9003227  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 32225528 - 32225605
Alignment:
Q  27 tcatgcatgatccaatcagatttttggccatgaggagcacgacctttgtagaaaacaagagtctttctcattccaatc 104  Q
    ||||||||||||||||||| ||| || |||| ||| || |  |||||||||||||| || ||||| ||||||||||||    
T  32225528 tcatgcatgatccaatcagttttctgtccattaggtgctcttcctttgtagaaaacgagtgtcttcctcattccaatc 32225605  T

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Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 42048486 - 42048587
Alignment:
Q  1 cattttgattagtttcaagacggtactcatgcatgatccaatcagatttttggccatgaggagcacgacctttgtagaaaacaagagtctttctcattcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||  || ||||| |||||||| || || |||||||||||||| ||    
T  42048486 cattttgattagtttcaagacggtactcatgcatgatccaatcagatttctgtccatttggggcacgtcctttgtaaaacactagagtctttctcatccc 42048585  T
Q  101 aa 102  Q
    ||    
T  42048586 aa 42048587  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 12276755 - 12276670
Alignment:
Q  18 agacggtactcatgcatgatccaatcagatttttggccatgaggagcacgacctttgtagaaaacaagagtctttctcattccaat 103  Q
    |||||||| |||||||| ||||||||||  ||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||    
T  12276755 agacggtattcatgcataatccaatcagtcttttgtccatgaggagctctacctttgtagaacacaagagtctttctcattccaat 12276670  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 3575606 - 3575526
Alignment:
Q  24 tactcatgcatgatccaatcagatttttggccatgaggagcacgacctttgtagaaaacaagagtctttctcattccaatc 104  Q
    ||||||||||||||||||||||||||||| |||| ||| || |  ||||| ||||| ||||||||||||||||||||||||    
T  3575606 tactcatgcatgatccaatcagatttttgaccattaggtgctcttcctttatagaagacaagagtctttctcattccaatc 3575526  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 8450273 - 8450197
Alignment:
Q  27 tcatgcatgatccaatcagatttttggccatgaggagcacgacctttgtagaaaacaagagtctttctcattccaat 103  Q
    ||||||||||||||||||||||| || |||| ||| || |  ||||||||||||||||| ||||| ||||| |||||    
T  8450273 tcatgcatgatccaatcagatttctgtccattaggggctcttcctttgtagaaaacaagggtcttcctcatcccaat 8450197  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 8450126 - 8450064
Alignment:
Q  174 ttggttcttgttccggttggatacttcttgtctttatggctgaagaagtaccaatcattctgc 236  Q
    ||||||||||| || ||||||||||| || |||||||||||||| || ||||| |||||||||    
T  8450126 ttggttcttgtccctgttggatactttttatctttatggctgaaaaaataccactcattctgc 8450064  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 26496980 - 26496886
Alignment:
Q  15 tcaagacggtactcatgcatgatccaatcagatttttggccatgaggagcacgacctttgtagaaaacaagagtctttctcattccaatcctttt 109  Q
    |||||||| |||||||||||||||||||||| ||| || |||||||||||||| ||  ||||||| || |  || || |||||||||||||||||    
T  26496980 tcaagacgatactcatgcatgatccaatcagttttgtgaccatgaggagcacgtccagtgtagaacactaaggttttcctcattccaatcctttt 26496886  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 43438746 - 43438655
Alignment:
Q  144 gctttccagaaccctgcagccgtagcgcgattggttcttgttccggttggatacttcttgtctttatggctgaagaagtaccaatcattctg 235  Q
    ||||||||||| || ||||| || || | ||| ||||||||||| || ||||||||||| ||||| |||||||| |||||||| ||||||||    
T  43438746 gctttccagaatccagcagcagtggctctattagttcttgttcctgtaggatacttcttatctttgtggctgaaaaagtaccactcattctg 43438655  T

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