View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2726_low_29 (Length: 250)
Name: NF2726_low_29
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2726_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 7898785 - 7898574
Alignment:
| Q |
1 |
atttaattttgatggattgttgtcgtaaaaaatttacacggttaacaaaacatatttaattatatatgtgattttagaagtagttataattaatatcaaa |
100 |
Q |
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| T |
7898785 |
atttaattttgatggattgttgtcgtaaaaaatttacacggttaacaaatcatatttaattatatatgtgattttagaagtagttataattaatgtcaaa |
7898686 |
T |
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| Q |
101 |
tatttttaatgatacgacgattataaccgactaatagtatagttggtatattccctaaaaacaaaagtataattggtatatatttaaagtttcccaaggt |
200 |
Q |
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| T |
7898685 |
tatttt-aatgatactacgattataaccgactaatagtatagttggtatattccctaaaaacaaaagtataattggtatatattaaaagtttcccaaggt |
7898587 |
T |
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| Q |
201 |
tccaaatattcct |
213 |
Q |
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| T |
7898586 |
tccaaatattcct |
7898574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 7898565 - 7898468
Alignment:
| Q |
133 |
aatagtatagttggtatattccctaaaaacaaaagtataattggtatatatttaaagtttcccaaggttccaaatattcctcatgtccctttttataa |
230 |
Q |
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| T |
7898565 |
aatagtatagttggtatattccctaaaaacaaaagtataattggtatatattaaaagtttcccaaggttccaaatattccttatatccctttttataa |
7898468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 35056879 - 35056828
Alignment:
| Q |
62 |
atatatgtgattttagaagtagttataattaatatcaaatatttttaatgat |
113 |
Q |
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| T |
35056879 |
atatgtgtgattttagaagtagttataattaaaatcaaatatttttattgat |
35056828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 35035625 - 35035574
Alignment:
| Q |
62 |
atatatgtgattttagaagtagttataattaatatcaaatatttttaatgat |
113 |
Q |
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|||| ||||||||||||||||||||| ||||| |||||||||||||| |||| |
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| T |
35035625 |
atatgtgtgattttagaagtagttatgattaaaatcaaatatttttattgat |
35035574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 36261988 - 36262048
Alignment:
| Q |
63 |
tatatgtgattttagaagtagttataattaatatcaaatatttttaatgatacgacgatta |
123 |
Q |
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| T |
36261988 |
tatatgtgactttagaagtagttatgattaaagccaaatgtttttaatgatccaacgatta |
36262048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 38093909 - 38093854
Alignment:
| Q |
58 |
aattatatatgtgattttagaagtagttataattaatatcaaatatttttaatgat |
113 |
Q |
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| T |
38093909 |
aattatacatgtgattttaaaagtacttaagattaaaatcaaatatttttaatgat |
38093854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 31650348 - 31650295
Alignment:
| Q |
73 |
tttagaagtagttataattaatatcaaatatttttaatgatacgacgattataa |
126 |
Q |
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||||||||||||||| ||||| ||||| |||||||||||| |||| ||||||| |
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| T |
31650348 |
tttagaagtagttatgattaaagtcaaacatttttaatgatccgacaattataa |
31650295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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