View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2726_low_3 (Length: 624)
Name: NF2726_low_3
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2726_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 21 - 618
Target Start/End: Complemental strand, 48237554 - 48236960
Alignment:
| Q |
21 |
atccaacctcgcacacctcggtaagtggaaaagaaagataagtttctgatggccaagtgttatattagattttaaattgaactgtctttcttgtagaaca |
120 |
Q |
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| T |
48237554 |
atccaacctcgcacacctcggtaagtggaaaagaaagataagtttctgatggccaagtgttatattagattttaaattgaactgtctttcttgtagaaca |
48237455 |
T |
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| Q |
121 |
agaaacattctttgaccaaatgaagacaattaaaaaagtaatgaagaatttgacaattgaatgtttaattcaatacagaaagaacttgaagctgagatga |
220 |
Q |
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| T |
48237454 |
agaaacattctttgaccaaatgaagacaattaaaaaagtaatgaagaatttgacaattgaatgtttaattcaatacagaaagaacttgaagctgagatga |
48237355 |
T |
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| Q |
221 |
aaagattgaggcttgaattgaagcaaactatggacatgtacagctcagcttgcaaacaagcaatatcagcaaaaaatcaggtgatgtgaattatgcaata |
320 |
Q |
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| T |
48237354 |
aaagattgaggcttgaattgaagcaaactatggacatgtacagctcagcttgcaaacaagcaatatcagcaaaaaatcaggtgatgtgaattatgcaata |
48237255 |
T |
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| Q |
321 |
ggaacaaagtgctagtaacaattactaaacaaaataccaagtaattataaaaatcataaataagtttcattattgatcatgatgctttaaattaagtgat |
420 |
Q |
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| T |
48237254 |
ggaacaaagtgctagtaacaattactaaacaaaatactaagtaattataaaaatcataaataagtttcattattgatcatgatgctttaaattaagtgat |
48237155 |
T |
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| Q |
421 |
ggtaggaaagaatgaactcttaagtttgtcaaatgaaaattatgaaacgactctaaaatgtgtgataaacaggtgtgttgtacgaacatcaaaatacaga |
520 |
Q |
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| T |
48237154 |
ggtaggaaagaatgaactcttaagtttgtcaaatgaaaattatgaaacgactctaaaatgtgtgataaacaggtgtgttgtacgaacatcaaaatacaga |
48237055 |
T |
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| Q |
521 |
cactgtacgtgaaaccatatgttttatctctatatcttcttcttcaacttgcacagatttgaaaaataaatacaaaaagcaaatgacatattcttcga |
618 |
Q |
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| T |
48237054 |
cactgtacgtgaaaccatatgttttatctctatatctt---cttcaacttgcacagatttgaaaaataaatacaaaaagcaaatgacatttttttcga |
48236960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 38612923 - 38612830
Alignment:
| Q |
88 |
gattttaaattgaactgtctttcttgtagaacaagaaacattctttgaccaaatgaagacaat-taaaaaagtaatgaagaatttgacaattga |
180 |
Q |
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| T |
38612923 |
gatttttaattgaattgtctttcttgtcgaacaagaaacattatttgaccaaacgatgatagtaaaaaaaagtaattaagaatgtgacaattga |
38612830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 39117393 - 39117443
Alignment:
| Q |
90 |
ttttaaattgaactgtctttcttgtagaacaagaaacattctttgaccaaa |
140 |
Q |
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| T |
39117393 |
tttttaattgaattttctttcttgtagaacaagaaacaatatttgaccaaa |
39117443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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