View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2726_low_31 (Length: 241)
Name: NF2726_low_31
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2726_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 32309764 - 32309532
Alignment:
| Q |
1 |
tgcttgttccacctcctccttaatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcataggaaccatttctatcacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32309764 |
tgcttgttccacctcctccttaatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcataggaaccatttctatcacca |
32309665 |
T |
|
| Q |
101 |
ttgtcttccaatagcaaggaagcatcacatccctgatttcgtaacacctcaagtagttagaacagcaaatcaaaaccattatgaaagcaagaagatgatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
32309664 |
ttgtcttccaatagcaaggaagcatcacatccctgatttcgtaacaccacaagtagttagaacaacaaatcaaaaccattatgaaagcaagaagatgatt |
32309565 |
T |
|
| Q |
201 |
tagtaaacatagataaaatcattatgaaacaaa |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
32309564 |
tagtaaacatagataaaatcattatgaaacaaa |
32309532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 32565070 - 32565302
Alignment:
| Q |
1 |
tgcttgttccacctcctccttaatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcataggaaccatttctatcacca |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32565070 |
tgcttgttccacctcctccttgatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcataggaaccgtttctatcacca |
32565169 |
T |
|
| Q |
101 |
ttgtcttccaatagcaaggaagcatcacatccctgatttcgtaacacctcaagtagttagaacagcaaatcaaaaccattatgaaagcaagaagatgatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
32565170 |
ttgtcttccaatagcaaggaagcatcacaaccctgatttagaaacaccacaagtagttagaacagcaaatcaaaaccattatgaaatcaagaagatgatt |
32565269 |
T |
|
| Q |
201 |
tagtaaacatagataaaatcattatgaaacaaa |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
32565270 |
tagtaaacatagataaaatcattatgaaacaaa |
32565302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 32814693 - 32814925
Alignment:
| Q |
1 |
tgcttgttccacctcctccttaatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcataggaaccatttctatcacca |
100 |
Q |
| |
|
|||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
32814693 |
tgcttgctccacctcttccttgatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcataggaaccgtttctatcacca |
32814792 |
T |
|
| Q |
101 |
ttgtcttccaatagcaaggaagcatcacatccctgatttcgtaacacctcaagtagttagaacagcaaatcaaaaccattatgaaagcaagaagatgatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
32814793 |
ttgtcttccaatagcaaggaagcatcacatccctgatttcgtaacaccacaagtagttagaacagcaaatcaaaaccattatgaaatcaagaagatgatt |
32814892 |
T |
|
| Q |
201 |
tagtaaacatagataaaatcattatgaaacaaa |
233 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
32814893 |
tagtaaacatagataaaatcactatgaaacaaa |
32814925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 32305631 - 32305422
Alignment:
| Q |
1 |
tgcttgttccacctcctccttaatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcataggaaccatttctatcacca |
100 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
32305631 |
tgcttgatccacctcctccttgatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcataggaaccgtttctatcacca |
32305532 |
T |
|
| Q |
101 |
ttgtcttccaatagcaaggaagcatcacatccctgatttcgtaa---cacctcaagtagttagaacagcaaatcaaaaccattatgaaagcaagaagatg |
197 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| | || |||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
32305531 |
tagtcttccaatagcaaggaagcatcacatccctgatttggcaacaccaccacaagtagttagaacagcaaatcaaagccattatgaaagcaagaagatg |
32305432 |
T |
|
| Q |
198 |
atttagtaaa |
207 |
Q |
| |
|
||||| |||| |
|
|
| T |
32305431 |
atttaataaa |
32305422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 28220975 - 28220815
Alignment:
| Q |
1 |
tgcttgttccacctcctccttaatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcataggaaccatttctatcacca |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
28220975 |
tgcttgttcgacctcctccttaatcaagtcaactttgtcattacctttcaatgtttgatttggaatagcttgcttctcataggaactgtttctatcacca |
28220876 |
T |
|
| Q |
101 |
ttgtcttccaatagcaaggaagcatcacatccctgatttcgtaacacctcaagtagttaga |
161 |
Q |
| |
|
||||| ||||| | ||||||||||||||| |||||||| | |||||| |||||||||||| |
|
|
| T |
28220875 |
ttgtcctccaacaacaaggaagcatcacaaccctgattcagcaacaccacaagtagttaga |
28220815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 28215281 - 28215365
Alignment:
| Q |
1 |
tgcttgttccacctcctccttaatcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcataggaa |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28215281 |
tgcttgttccacctcctccttaatcaagtcaactttgtcaaaaccttttaatgtttgatttggaatagcctgcttctcataggaa |
28215365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 302008 - 301930
Alignment:
| Q |
133 |
ctgatttcgtaacacctcaagtagttagaacagcaaatcaaaaccattatgaaagcaagaagatgatttagtaaacata |
211 |
Q |
| |
|
||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
302008 |
ctgatttcgcaacaccacaagttgttagaaaagcaaatcaaaaccattatgaaagcaagaagatgattcggtaaacata |
301930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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