View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2726_low_32 (Length: 230)
Name: NF2726_low_32
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2726_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 32305726 - 32305926
Alignment:
| Q |
21 |
tatattttctgttgaaagctcttaattctgatgcattttcactttatttatgcacctatgatttatttatcgacatggccatcgcagggtggtgggcctt |
120 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
32305726 |
tatatcttctgttgaaatctcttaattctgatgcattttcactttatttatgcacctatgatttatttatggacatggtcatcgcagggtggtgggcctt |
32305825 |
T |
|
| Q |
121 |
tctatccagttaaaacaggcagacgagatagcctgcaatcatttttccaggaggcaactgatcagattccaaggcctgatgataacattacgcgcacact |
220 |
Q |
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|||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
32305826 |
tctatctagttttaacaggcagacgagatagcctgcaatcgtttttccaggaggcaactgatcagattccaaggcctgacgataacattacgcgcgcact |
32305925 |
T |
|
| Q |
221 |
g |
221 |
Q |
| |
|
| |
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|
| T |
32305926 |
g |
32305926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 32309859 - 32310059
Alignment:
| Q |
21 |
tatattttctgttgaaagctcttaattctgatgcattttcactttatttatgcacctatgatttatttatcgacatggccatcgcagggtggtgggcctt |
120 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
32309859 |
tatatcttctgttgaaatctcttaattctgatgcattttcactttatttatgcacctatgatttatttatggacatggccattgcagggtggtgggcctt |
32309958 |
T |
|
| Q |
121 |
tctatccagttaaaacaggcagacgagatagcctgcaatcatttttccaggaggcaactgatcagattccaaggcctgatgataacattacgcgcacact |
220 |
Q |
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| T |
32309959 |
tctatccagttttaacaggcagacgagatagcctgcaatcgtttttccacgaggcaactgatcaaattccaaggcctgacgataaccttatgcgcacact |
32310058 |
T |
|
| Q |
221 |
g |
221 |
Q |
| |
|
| |
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| T |
32310059 |
g |
32310059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 21 - 221
Target Start/End: Complemental strand, 32787417 - 32787217
Alignment:
| Q |
21 |
tatattttctgttgaaagctcttaattctgatgcattttcactttatttatgcacctatgatttatttatcgacatggccatcgcagggtggtgggcctt |
120 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||||||||||||||| ||||||||| | |
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| T |
32787417 |
tatatcttctgttgaaagctcttaattctgatgcattttcactttatttatgaacgtatgatttattaattgacatggccatcgcaggctggtgggccat |
32787318 |
T |
|
| Q |
121 |
tctatccagttaaaacaggcagacgagatagcctgcaatcatttttccaggaggcaactgatcagattccaaggcctgatgataacattacgcgcacact |
220 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| || |||||| |
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| T |
32787317 |
tctatccagttttaacaggcagacgagatagcctgcaatcgtttttccaggaggcaactgatcagattccaaggcctgacgataacattatgcacacact |
32787218 |
T |
|
| Q |
221 |
g |
221 |
Q |
| |
|
| |
|
|
| T |
32787217 |
g |
32787217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 40 - 220
Target Start/End: Complemental strand, 32814610 - 32814430
Alignment:
| Q |
40 |
tcttaattctgatgcattttcactttatttatgcacctatgatttatttatcgacatggccatcgcagggtggtgggcctttctatccagttaaaacagg |
139 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32814610 |
tcttaattatgatgcattttcactttatttatgcacctatgatttatttatggacatggccatcgcagggtggtgggcctttctatccagttttaacagg |
32814511 |
T |
|
| Q |
140 |
cagacgagatagcctgcaatcatttttccaggaggcaactgatcagattccaaggcctgatgataacattacgcgcacact |
220 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| |
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| T |
32814510 |
cagacgagatagcctgcaatcgtttttccaggaggcaactgatcagattccaaggcctgacgatagcattatgcgcacact |
32814430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 64 - 221
Target Start/End: Complemental strand, 28214953 - 28214796
Alignment:
| Q |
64 |
ttatttatgcacctatgatttatttatcgacatggccatcgcagggtggtgggcctttctatccagttaaaacaggcagacgagatagcctgcaatcatt |
163 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
28214953 |
ttatttttgcacctatgatttatttatcgacatggccatggcagggtgggggacctttctatccagttttaacaggcagacgagatagcctgcaatcgtt |
28214854 |
T |
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| Q |
164 |
tttccaggaggcaactgatcagattccaaggcctgatgataacattacgcgcacactg |
221 |
Q |
| |
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||||||||||||| ||||||| |||||||||||||| |||||||| |||||||||||| |
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|
| T |
28214853 |
tttccaggaggcagctgatcaaattccaaggcctgacgataacatcacgcgcacactg |
28214796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 66 - 221
Target Start/End: Original strand, 28221333 - 28221488
Alignment:
| Q |
66 |
atttatgcacctatgatttatttatcgacatggccatcgcagggtggtgggcctttctatccagttaaaacaggcagacgagatagcctgcaatcatttt |
165 |
Q |
| |
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|||| ||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
28221333 |
atttttgcacttatgatttatttatggacatggccatggcagggtggtggtcctttctatccagttttaacaggcagacgagatagcctgcaatcgtttt |
28221432 |
T |
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| Q |
166 |
tccaggaggcaactgatcagattccaaggcctgatgataacattacgcgcacactg |
221 |
Q |
| |
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||||||||||| ||||||| |||||||||||||| |||||||| |||||||||||| |
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|
| T |
28221433 |
tccaggaggcatctgatcaaattccaaggcctgacgataacatcacgcgcacactg |
28221488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 103 - 221
Target Start/End: Complemental strand, 32564879 - 32564761
Alignment:
| Q |
103 |
cgcagggtggtgggcctttctatccagttaaaacaggcagacgagatagcctgcaatcatttttccaggaggcaactgatcagattccaaggcctgatga |
202 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| || |
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| T |
32564879 |
cgcagggtggtgggcctttctatccagttttaacaggcagacgagatagcctgcaatcgtttttccacgaggcaactgatcaaattccaaggcctgacga |
32564780 |
T |
|
| Q |
203 |
taacattacgcgcacactg |
221 |
Q |
| |
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|||| ||| |||||||||| |
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|
| T |
32564779 |
taaccttatgcgcacactg |
32564761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 32564975 - 32564930
Alignment:
| Q |
21 |
tatattttctgttgaaagctcttaattctgatgcattttcacttta |
66 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
32564975 |
tatatcttctgttgaatgctcttaattctgatgcattttcacttta |
32564930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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