View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2726_low_33 (Length: 224)
Name: NF2726_low_33
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2726_low_33 |
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| [»] scaffold0293 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 22 - 210
Target Start/End: Complemental strand, 37596917 - 37596727
Alignment:
| Q |
22 |
tacatgcacaccattcacaccaatgcagccaattatcatctcacgtgcccatcaaattatatgtgagcagtaggggatcttgaannnnnnngttgtt--g |
119 |
Q |
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| T |
37596917 |
tacatgcacaccattcacaccaatgcagccaattatcatctcacgtggccataaaattataaatgagcagtagcggatcttgagttttttttttgttttg |
37596818 |
T |
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| Q |
120 |
ttgttgagggtgccaaataattatggaatatatgttaaatagtttcaaaccggtctaatggttcatttacttgaattaacatgggggatga |
210 |
Q |
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| T |
37596817 |
ttgttgaaggtgccaaataattatggaatatatgttaaatagtttcaaaccgatctagtggttcatttgcttgaattaacatgggggatga |
37596727 |
T |
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Target: scaffold0293 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0293
Description:
Target: scaffold0293; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 1104 - 1063
Alignment:
| Q |
127 |
gggtgccaaataattatggaatatatgttaaatagtttcaaa |
168 |
Q |
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| T |
1104 |
gggtgtcaaataattatggaatatatattaaatagtttcaaa |
1063 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 5232311 - 5232352
Alignment:
| Q |
127 |
gggtgccaaataattatggaatatatgttaaatagtttcaaa |
168 |
Q |
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| T |
5232311 |
gggtgccaaatatttatggaatatatattaaacagtttcaaa |
5232352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 50432613 - 50432565
Alignment:
| Q |
120 |
ttgttgagggtgccaaataattatggaatatatgttaaatagtttcaaa |
168 |
Q |
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| T |
50432613 |
ttgttgggggtgccaaatatatatggaatatatattaaatggtttcaaa |
50432565 |
T |
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