View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2726_low_34 (Length: 223)
Name: NF2726_low_34
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2726_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 38243604 - 38243413
Alignment:
| Q |
15 |
gatgaatatggaaggtctataaggccagattataaaggaggttggttatgttgttatgattgtacacagtgcaagttgaaggaaggttttgagggtccaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38243604 |
gatgaatatggaaggtctataaggccagattataaaggaggttggttatgttgttatgattgtacacagtgcaagttgaaggaaggttttgagggtccaa |
38243505 |
T |
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| Q |
115 |
agagaagcctctacttaagatacactgttaaatgggttgattgggatgattttatagtgcctcttaagatatatgtaattgatgttaccgat |
206 |
Q |
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| T |
38243504 |
agagaagcctctacttaagatacactgttaaatgggttgattgggatgattttatagtgcctcttaagatatatgtaattgatgttaccgat |
38243413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 38238666 - 38238479
Alignment:
| Q |
15 |
gatgaatatggaaggtctataaggccagattataaaggaggttggttatgttgttatgattgtacacagtgcaagttgaaggaaggttttgagggtccaa |
114 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
38238666 |
gatgaatatggaaggtctattaggccagattataaaggaggtttgttatgttgttatgattctaaacagtgcaagttgaaggaaggttttgagggtccaa |
38238567 |
T |
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| Q |
115 |
agagaagcctctacttaagatacactgttaaatgggttgattgggatgattttatagtgcctcttaagatatatgtaattgatgttac |
202 |
Q |
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| T |
38238566 |
agagaagcctctacttaagatacactgttaaatgggttgattgggatgattttatagtgcctgttaagatatatatacttgatgttac |
38238479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 38220756 - 38220569
Alignment:
| Q |
15 |
gatgaatatggaaggtctataaggccagattataaaggaggttggttatgttgttatgattgtacacagtgcaagttgaaggaaggttttgagggtccaa |
114 |
Q |
| |
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||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||| | || |||||||||||||||||||||||||||| |||||| |
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| T |
38220756 |
gatgaatatggaaggtcaataaggtcagattataaaggaggtttcttatgttgttatgactctaaacagtgcaagttgaaggaaggttttgagcgtccaa |
38220657 |
T |
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| Q |
115 |
agagaagcctctacttaagatacactgttaaatgggttgattgggatgattttatagtgcctcttaagatatatgtaattgatgttac |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||| |
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| T |
38220656 |
agagaagcctctacttaagatacactgttaaatgggttgattgggatgattttatagtgcctgctaagatatatatacttgatgttac |
38220569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 38227137 - 38226950
Alignment:
| Q |
15 |
gatgaatatggaaggtctataaggccagattataaaggaggttggttatgttgttatgattgtacacagtgcaagttgaaggaaggttttgagggtccaa |
114 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
38227137 |
gatgaatatggaaggtctattgggccagattataaaggaggtttgttatgttgttatgaccatacacaatgcaagttgaaggaaggttttgagggtccaa |
38227038 |
T |
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| Q |
115 |
agagaagcctctacttaagatacactgttaaatgggttgattgggatgattttatagtgcctcttaagatatatgtaattgatgttac |
202 |
Q |
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||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| |
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| T |
38227037 |
agagaagtctctacctaagatacactgtaaaatgggttgattgggatgattttatagtgcctgttaagatatatatacttgatgttac |
38226950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 38253867 - 38253680
Alignment:
| Q |
15 |
gatgaatatggaaggtctataaggccagattataaaggaggttggttatgttgttatgattgtacacagtgcaagttgaaggaaggttttgagggtccaa |
114 |
Q |
| |
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||||| || ||||||||| ||||||| ||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
38253867 |
gatgagtacggaaggtctgtaaggcctgattataaaggaggtatgttatgttgttatgatcatacacggtgcaagttgaaggaaggttttgagggtccaa |
38253768 |
T |
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| Q |
115 |
agagaagcctctacttaagatacactgttaaatgggttgattgggatgattttatagtgcctcttaagatatatgtaattgatgttac |
202 |
Q |
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|||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
38253767 |
agagaaacctctacttaagatacacagtgaaatgggttgattgggatgattttatagtgcctgttaagatatatataattgatgttac |
38253680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 38214714 - 38214527
Alignment:
| Q |
15 |
gatgaatatggaaggtctataaggccagattataaaggaggttggttatgttgttatgattgtacacagtgcaagttgaaggaaggttttgagggtccaa |
114 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| ||||||||| ||||||||||||||||| ||||||||| || |||||||||||||||||||| |||| |
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| T |
38214714 |
gatgaatatggaaggtctattaggtcagattatgaaggaggtttgttatgttgttatgattatacacagtgtaaattgaaggaaggttttgaggggccaa |
38214615 |
T |
|
| Q |
115 |
agagaagcctctacttaagatacactgttaaatgggttgattgggatgattttatagtgcctcttaagatatatgtaattgatgttac |
202 |
Q |
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||||||| ||||| ||||||||||||| |||||||| ||||||||||||||||| |||||| | ||||||||| ||||||||||||| |
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| T |
38214614 |
agagaagtctctatctaagatacactgtaaaatgggtcgattgggatgattttattgtgcctgtgaagatatatataattgatgttac |
38214527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 38248752 - 38248568
Alignment:
| Q |
15 |
gatgaatatggaaggtctataaggccagattataaaggaggttggttatgttgttatgattgtacacagtgcaagttgaaggaaggttttgagggtccaa |
114 |
Q |
| |
|
||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| || || || | |
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| T |
38248752 |
gatgagtatggaaaatctattaggccagattataaaggaggtttgttatgttgttatgattctacacggtgcaagttgaaggaaggtttcgaaggaccta |
38248653 |
T |
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| Q |
115 |
agagaagcctctacttaagatacactgttaaatgggttgattgggatgattttatagtgcctcttaagatatatgtaattgatgt |
199 |
Q |
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|||||||||| |||||||||| ||| || || ||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
38248652 |
agagaagcctttacttaagatgcacagtaaagtgggttgattgggatgattttatagtgcccgttaagatatatataattgatgt |
38248568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 17455367 - 17455180
Alignment:
| Q |
15 |
gatgaatatggaaggtctataaggccagattataaaggaggttggttatgttgttatgattgtacacagtgcaagttgaaggaaggttttgagggtccaa |
114 |
Q |
| |
|
||||||||||||||| || ||| | | |||||||||||||||| || ||||||||||||| |||||| ||||||||||||||||||||| |||| |||| |
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| T |
17455367 |
gatgaatatggaaggcctttaatgtctgattataaaggaggtttgtcatgttgttatgataatacacaatgcaagttgaaggaaggttttaagggaccaa |
17455268 |
T |
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| Q |
115 |
agagaagcctctacttaagatacactgttaaatgggttgattgggatgattttatagtgcctcttaagatatatgtaattgatgttac |
202 |
Q |
| |
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||||||| || || | | ||||| | |||||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||| |
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| T |
17455267 |
agagaagtctttatctgaaatacaaaatcaaatgggttgattgggatgaatttatagttcctcttaagacatacataattgatgttac |
17455180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 17434267 - 17434080
Alignment:
| Q |
15 |
gatgaatatggaaggtctataaggccagattataaaggaggttggttatgttgttatgattgtacacagtgcaagttgaaggaaggttttgagggtccaa |
114 |
Q |
| |
|
|||||||||||||| || |||| |||||||||||| ||| | ||||||| ||||| |||||| ||||||||||||| |||||||||||| |||| |
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| T |
17434267 |
gatgaatatggaagacctttaagtttagattataaagggggtatgaaatgttgtcatgataatacacaatgcaagttgaaggtaggttttgagggaccaa |
17434168 |
T |
|
| Q |
115 |
agagaagcctctacttaagatacactgttaaatgggttgattgggatgattttatagtgcctcttaagatatatgtaattgatgttac |
202 |
Q |
| |
|
||||||| ||||| | | ||||| | |||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||| |
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| T |
17434167 |
agagaagtctctatctgaaatacaaaatcaaatggattgattgggatgattttatagtgcctgttaaggcatacataattgatgttac |
17434080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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