View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2726_low_35 (Length: 221)

Name: NF2726_low_35
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2726_low_35
NF2726_low_35
[»] chr5 (2 HSPs)
chr5 (14-204)||(37894386-37894576)
chr5 (77-174)||(28521356-28521453)
[»] chr6 (1 HSPs)
chr6 (80-148)||(9729813-9729881)
[»] chr8 (2 HSPs)
chr8 (72-174)||(35861069-35861169)
chr8 (77-148)||(5099808-5099879)
[»] chr7 (2 HSPs)
chr7 (80-143)||(15011366-15011429)
chr7 (80-141)||(36801163-36801224)
[»] chr2 (2 HSPs)
chr2 (80-148)||(42428168-42428236)
chr2 (80-148)||(41993462-41993530)
[»] chr4 (1 HSPs)
chr4 (70-143)||(23860498-23860571)


Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 37894576 - 37894386
Alignment:
Q  14 aatatgaattacgcatattgcactcacgatgacttttttagatcaaatcggtcgatcactaaatgtgtgtttggattagtttttggaggctcatttccac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37894576 aatatgaattacgcatattgcactcacgatgacttttttagatcaaatcggtccatcactaaatgtgtgtttggattagtttttggaggctcatttccac 37894477  T
Q  114 ttcccaatgcactttaaacgtgaaaattgtgaagccactattgctagcttctactttaaacacgtgtatgttgtcaatttgccgtaaaaac 204  Q
    |||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37894476 ttcccaatgcactttaaacgtgaaaattatgaaaccactgttgctagcttctactttaaacgcgtgtatgttgtcaatttgccgtaaaaac 37894386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 28521453 - 28521356
Alignment:
Q  77 tgtgtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaattgtgaagccactattgctagcttctactttaaac 174  Q
    ||||| ||| |||||| || | || |||||||||||||| ||||| |||||||||| |||||||| |||||  || |||  |||||||||||||||||    
T  28521453 tgtgtatttagattagcttatagaagctcatttccactttccaattcactttaaacatgaaaattatgaagttacaattaatagcttctactttaaac 28521356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 9729881 - 9729813
Alignment:
Q  80 gtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaattgtgaagc 148  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9729881 gtgtttggattagcttttggaggctcatctccacttcccaatgcactttaaacgtgaaaattgtgaagc 9729813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 35861169 - 35861069
Alignment:
Q  72 ctaaatgtgtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaattgtgaagccactattgctagcttctacttta 171  Q
    |||| ||||| |||||||||| |||||||||||||||||||||||||| ||||  ||||| ||||||||| ||||||||| |||  ||| |||||| |||    
T  35861169 ctaagtgtgtatttggattagcttttggaggctcatttccacttcccagtgca--ttaaatgtgaaaattatgaagccacaattagtagtttctacctta 35861072  T
Q  172 aac 174  Q
    |||    
T  35861071 aac 35861069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 5099808 - 5099879
Alignment:
Q  77 tgtgtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaattgtgaagc 148  Q
    |||||||||||||||| |||||||| ||||||| |||||    |||||||||||| ||||||||| ||||||    
T  5099808 tgtgtgtttggattagcttttggagactcattttcacttttagatgcactttaaaagtgaaaattatgaagc 5099879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 143
Target Start/End: Original strand, 15011366 - 15011429
Alignment:
Q  80 gtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaattgt 143  Q
    ||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||    
T  15011366 gtgtttggattagcttttggaggctcatttcaacttctcaatgcactttaaatgtgaaaattgt 15011429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 36801163 - 36801224
Alignment:
Q  80 gtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaatt 141  Q
    |||||| |||| ||||||  ||| | ||||| ||||||||||||||||||||| ||||||||    
T  36801163 gtgtttcgatttgtttttataggtttatttctacttcccaatgcactttaaacatgaaaatt 36801224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 42428236 - 42428168
Alignment:
Q  80 gtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaattgtgaagc 148  Q
    ||||||||||||  |||||||| ||||||||||||| ||||||||||||||| ||||||| ||||||||    
T  42428236 gtgtttggattaacttttggagcctcatttccactttccaatgcactttaaatgtgaaaaatgtgaagc 42428168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 41993462 - 41993530
Alignment:
Q  80 gtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaattgtgaagc 148  Q
    ||||||||||| | ||||| |||||||||| |||||  ||||  |||||||||| ||||||||||||||    
T  41993462 gtgtttggatttgcttttgaaggctcattttcacttttcaatatactttaaacgcgaaaattgtgaagc 41993530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 143
Target Start/End: Original strand, 23860498 - 23860571
Alignment:
Q  70 cactaaatgtgtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaacgtgaaaattgt 143  Q
    |||||| || |||||||||||||||||| |||| |||||| |||||  ||||||| |||||||| |||||||||    
T  23860498 cactaagtgggtgtttggattagtttttagaggttcattttcacttttcaatgcattttaaacgcgaaaattgt 23860571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University