View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2726_low_4 (Length: 587)
Name: NF2726_low_4
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2726_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 24 - 423
Target Start/End: Complemental strand, 41896397 - 41895998
Alignment:
| Q |
24 |
gaaccctcttgattattaatcccttgtaaaccaccataaccattctcaaacccttctaagccaaaattgaccccaagcttaaaatcttgcaaagcaaagc |
123 |
Q |
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| T |
41896397 |
gaaccctcttgattattaatcccttgtaaaccaccataaccattctcaaacccttctaagccaaaattgaccccaagcttaaaatcttgcaaagcaaagc |
41896298 |
T |
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| Q |
124 |
cacttgaattatacattgcactagactcagacaaagtcataggcataaaagaattcaaaccccttgatgaagaagcagttttcagaagctccatagcact |
223 |
Q |
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| T |
41896297 |
cacttgaattatacattgcactagactcagacaaagtcataggcataaaagaattcaaaccccttgatgaagaagcagttttcagaagctccatagcact |
41896198 |
T |
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| Q |
224 |
tgtagttttgtcttgatgatcagttgtgtaaggaagctcaatgaatttagatatggtgttataattatcctcagttgtttgtggtggataagctaggtta |
323 |
Q |
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| T |
41896197 |
tgtagttttgtcttgatgatcagttgtgtaaggaagctcaatgaatttagatatggtgttataattatcctcagttgtttgtggtggataagctaggtta |
41896098 |
T |
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| Q |
324 |
agatcttgtccttgatggatcttagggttttgagaagcagattgagggaaattattttgtgctgtagcaagatcaggattaatgataatattttttgtta |
423 |
Q |
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| T |
41896097 |
agatcttgtccttgatggatcttagggttttgagaagcagattgagggaaattattttgtgttgtagcaagatcaggattaatgataatattttttgtta |
41895998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 497 - 571
Target Start/End: Complemental strand, 41895927 - 41895853
Alignment:
| Q |
497 |
accaccacctacaggaacatttcttaaagaaccaccttcagtccaataccttctacaggttttgcaaaagtacct |
571 |
Q |
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| T |
41895927 |
accaccacctacaggaacatttcttaaagaaccaccttcagtccaataccttctacaggttttgcaaaagtacct |
41895853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 497 - 568
Target Start/End: Original strand, 9593552 - 9593623
Alignment:
| Q |
497 |
accaccacctacaggaacatttcttaaagaaccaccttcagtccaataccttctacaggttttgcaaaagta |
568 |
Q |
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| T |
9593552 |
accacctccaactggaacatttcttagagatcctccttcagtccaataccttctacatgtcttgcaaaagta |
9593623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 562
Target Start/End: Complemental strand, 34646117 - 34646052
Alignment:
| Q |
497 |
accaccacctacaggaacatttcttaaagaaccaccttcagtccaataccttctacaggttttgca |
562 |
Q |
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| T |
34646117 |
accaccaccaacaggaatgtttctaatggatccaccttgagtccaataccttctacatgttttgca |
34646052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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