View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2726_low_5 (Length: 515)

Name: NF2726_low_5
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2726_low_5
NF2726_low_5
[»] chr6 (4 HSPs)
chr6 (225-462)||(34353323-34353565)
chr6 (16-142)||(34352680-34352804)
chr6 (142-201)||(33629625-33629684)
chr6 (142-198)||(1682567-1682623)
[»] chr4 (4 HSPs)
chr4 (142-201)||(3130533-3130592)
chr4 (145-201)||(47540455-47540511)
chr4 (152-201)||(5817735-5817784)
chr4 (152-201)||(8655627-8655676)
[»] chr3 (3 HSPs)
chr3 (142-201)||(32004507-32004566)
chr3 (142-200)||(13448006-13448064)
chr3 (142-201)||(49732487-49732546)
[»] chr8 (1 HSPs)
chr8 (142-201)||(19385264-19385323)
[»] chr1 (7 HSPs)
chr1 (152-201)||(14366178-14366227)
chr1 (152-201)||(21527698-21527747)
chr1 (142-201)||(4644539-4644599)
chr1 (152-200)||(48266273-48266321)
chr1 (142-201)||(52336189-52336248)
chr1 (152-201)||(9528307-9528356)
chr1 (142-198)||(47115814-47115871)
[»] chr7 (1 HSPs)
chr7 (152-201)||(9546274-9546323)
[»] chr5 (1 HSPs)
chr5 (155-201)||(10487460-10487506)
[»] scaffold0220 (1 HSPs)
scaffold0220 (152-201)||(22767-22816)


Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-119; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 225 - 462
Target Start/End: Original strand, 34353323 - 34353565
Alignment:
Q  225 agttgatttttgtcattccatataggtgggtcaccaaatgacccattgtattgccaaacatgcaacccaaaatgaggaaataaatgtagg---gataaga 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||    
T  34353323 agttgatttttgtcattccatataggtgggtcaccaaatgacccattgtattgccaaacatgcaacccaaaatgaggaaataaatgtaggatcgataaga 34353422  T
Q  322 aattaccaatgatttggattttggaagtcccgtatttttgtgtgctctcctttgtaagtgacctgactcatttgggtctttaattcttcaaaaatatctt 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34353423 aattaccaatgatttggattttggaagtcccgtatttttgtgtgctctcctttgtaagtgacctgactcatttgggtctttaattcttcaaaaatatctt 34353522  T
Q  422 attttattaacac--aaaaaatactattttaaggaacgtttca 462  Q
    |||||||||||||  ||||||||||||||||||||||||||||    
T  34353523 attttattaacacaaaaaaaatactattttaaggaacgtttca 34353565  T

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Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 34352680 - 34352804
Alignment:
Q  16 tgaagtatgttattttttgtatatatagtatagataatttgtggaaattgctctataaaccgctcatgtttgtttaggaatctctcaatttttctgaacg 115  Q
    |||||||||||||||| | | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  34352680 tgaagtatgttattttctttgtacatagtatagataatttgtggaaattgctctataaaccgctcatgtttgtttaggaa--tctcaatttttctgaacg 34352777  T
Q  116 tatctttcgaggacacaaacatatcgg 142  Q
    ||||||| |||||||||||| ||||||    
T  34352778 tatcttttgaggacacaaacctatcgg 34352804  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 33629625 - 33629684
Alignment:
Q  142 gagactacagcaggaaccaagagttacaacaaaacaaccaatccaacagagctacatcag 201  Q
    ||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||    
T  33629625 gagactacaacaagaaccaagagttacaacaaaacaaccaacccaacagagctacatcag 33629684  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 1682567 - 1682623
Alignment:
Q  142 gagactacagcaggaaccaagagttacaacaaaacaaccaatccaacagagctacat 198  Q
    ||||||||  || ||||||||||||||||||||||||||||||||||||||||||||    
T  1682567 gagactactacaagaaccaagagttacaacaaaacaaccaatccaacagagctacat 1682623  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 3130592 - 3130533
Alignment:
Q  142 gagactacagcaggaaccaagagttacaacaaaacaaccaatccaacagagctacatcag 201  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3130592 gagactacaacaggaaccaagagttacaacaaaacaaccaacccaacagagctacatcag 3130533  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 47540455 - 47540511
Alignment:
Q  145 actacagcaggaaccaagagttacaacaaaacaaccaatccaacagagctacatcag 201  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  47540455 actacaacaggaaccaagagttacaacaaaacaaccaacccaacagagttacatcag 47540511  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 5817784 - 5817735
Alignment:
Q  152 caggaaccaagagttacaacaaaacaaccaatccaacagagctacatcag 201  Q
    |||||||||||| ||| |||||||||| ||| ||||||||||||||||||    
T  5817784 caggaaccaagaattaaaacaaaacaaacaacccaacagagctacatcag 5817735  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 8655676 - 8655627
Alignment:
Q  152 caggaaccaagagttacaacaaaacaaccaatccaacagagctacatcag 201  Q
    ||||||||||||||||||||||||||| ||| |||||| | |||||||||    
T  8655676 caggaaccaagagttacaacaaaacaaacaacccaacataactacatcag 8655627  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 32004507 - 32004566
Alignment:
Q  142 gagactacagcaggaaccaagagttacaacaaaacaaccaatccaacagagctacatcag 201  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32004507 gagactacaacaggaaccaagagttacaacaaaacaaccaacccaacagagctacatcag 32004566  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 13448006 - 13448064
Alignment:
Q  142 gagactacagcaggaaccaagagttacaacaaaacaaccaatccaacagagctacatca 200  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  13448006 gagactacagcaggaaccaagagttacaataaaacaaccaacccaacagagctacatca 13448064  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 49732546 - 49732487
Alignment:
Q  142 gagactacagcaggaaccaagagttacaacaaaacaaccaatccaacagagctacatcag 201  Q
    ||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  49732546 gagactacaacaggaatcaagagttacaacaaaacaaccaacccaacagagctacatcag 49732487  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 19385323 - 19385264
Alignment:
Q  142 gagactacagcaggaaccaagagttacaacaaaacaaccaatccaacagagctacatcag 201  Q
    |||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19385323 gagactacaataggaaccaagagttacaacaaaacaaccaacccaacagagctacatcag 19385264  T

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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 14366227 - 14366178
Alignment:
Q  152 caggaaccaagagttacaacaaaacaaccaatccaacagagctacatcag 201  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14366227 caggaaccaagagttacaacaaaacaaccaacccaacagagctacatcag 14366178  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 21527698 - 21527747
Alignment:
Q  152 caggaaccaagagttacaacaaaacaaccaatccaacagagctacatcag 201  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  21527698 caggaaccaagagttacaacaaaacaaacaacccaacagagctacatcag 21527747  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 4644539 - 4644599
Alignment:
Q  142 gagactacagcaggaaccaagagttacaac-aaaacaaccaatccaacagagctacatcag 201  Q
    ||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  4644539 gagactacaacaagaaccaagagttacaacaaaaacaaccaacccaacagagctacatcag 4644599  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 48266321 - 48266273
Alignment:
Q  152 caggaaccaagagttacaacaaaacaaccaatccaacagagctacatca 200  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  48266321 caggaaccaagagttacaacaaaacaaccaacacaacagagctacatca 48266273  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 52336189 - 52336248
Alignment:
Q  142 gagactacagcaggaaccaagagttacaacaaaacaaccaatccaacagagctacatcag 201  Q
    |||| |||| ||||| ||||||||| ||||||||||||||| ||||||||||||||||||    
T  52336189 gagattacaacaggagccaagagttgcaacaaaacaaccaacccaacagagctacatcag 52336248  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 9528356 - 9528307
Alignment:
Q  152 caggaaccaagagttacaacaaaacaaccaatccaacagagctacatcag 201  Q
    |||||||||||||||||| |||||||| ||| ||||||||| ||||||||    
T  9528356 caggaaccaagagttacaccaaaacaaacaacccaacagagttacatcag 9528307  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 47115814 - 47115871
Alignment:
Q  142 gagactacagcaggaaccaagagttacaacaaa-acaaccaatccaacagagctacat 198  Q
    ||||||||| ||| ||||||||||||||||||| |||||||| |||||| ||||||||    
T  47115814 gagactacaacagaaaccaagagttacaacaaatacaaccaacccaacaaagctacat 47115871  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 9546274 - 9546323
Alignment:
Q  152 caggaaccaagagttacaacaaaacaaccaatccaacagagctacatcag 201  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  9546274 caggaaccaagagttacaacaaaacaaacaacccaacagagctacatcag 9546323  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 10487506 - 10487460
Alignment:
Q  155 gaaccaagagttacaacaaaacaaccaatccaacagagctacatcag 201  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||    
T  10487506 gaaccaagagttacaacaaaacaaacaacccaacagagctacatcag 10487460  T

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Target: scaffold0220 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 22816 - 22767
Alignment:
Q  152 caggaaccaagagttacaacaaaacaaccaatccaacagagctacatcag 201  Q
    ||||||||||||||||||||||||||| ||| |||||||| ||| |||||    
T  22816 caggaaccaagagttacaacaaaacaaacaacccaacagaactatatcag 22767  T

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