View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2726_low_6 (Length: 507)
Name: NF2726_low_6
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2726_low_6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 9 - 476
Target Start/End: Original strand, 32731062 - 32731534
Alignment:
| Q |
9 |
attatacttaaagatattgacatagttgatcttgatggaaagaaagcatctgcatcatgcaatagtgtacaagggtcatgctcttcttgtaatccacaag |
108 |
Q |
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| T |
32731062 |
attatacttgaagatatcgacatagttgatcttgatggaaagaaagcatctgcatcatgcaatagtgtacaagggtcatgctcttcttgtaatccacaag |
32731161 |
T |
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| Q |
109 |
tatcgtgtctttaggttttgatcttttagaaagttgcaaaatttatgaaggaaaataaacaatttggttgagattcttaggaaatgaattgttaagtttt |
208 |
Q |
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| T |
32731162 |
tatcgtgtctttaggttttgatcttttagaaagttgcaaaatttatgaaggaaaataaacaatttggttgagattcttaggaaatgaattcttaagtttt |
32731261 |
T |
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| Q |
209 |
gtttcttaagagattaaatatgtccacggcttagttagtgggaatggtaattagaccttccttttttctcttttggttgagaatgagccccttttattta |
308 |
Q |
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| T |
32731262 |
gtttcttaagagattaaataggtccacgccttagttagtgggaatggtaattagaccttccttttttctcttttggttgagaatgagccccttttattta |
32731361 |
T |
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| Q |
309 |
tgctctatcaataatacttccttcttttgttctag------tttatatttatannnnnnncacaaatcaaaatgatatattaagaacaacgatgcaaatc |
402 |
Q |
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| T |
32731362 |
tgctctatcaataata-tttcttcttttgttctagtttatatttatatttatatttttttcacaaaccaaaatgatatactaacaacaacgatgcaaatc |
32731460 |
T |
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| Q |
403 |
tccacacaaggtgtgctaaagagaagcaccgctcaatgtttacagaaacaaggtgccatcatacaaaagcatca |
476 |
Q |
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| T |
32731461 |
ttcgcacaaggtgtgctaaagagaagcaccgctcaatgtttacagaaacaaggtgtcatcagacaaaagcatca |
32731534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 371 - 507
Target Start/End: Complemental strand, 16177091 - 16176955
Alignment:
| Q |
371 |
aaaatgatatattaagaacaacgatgcaaatctccacacaaggtgtgctaaagagaagcaccgctcaatgtttacagaaacaaggtgccatcatacaaaa |
470 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| ||||||||||| || | |||||| |
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| T |
16177091 |
aaaatgatatattaacaacaacgatgcaaatctccgcacaaggtgtgctacagagaagcaccgctcaaagtttacacaaacaaggtgctattagacaaaa |
16176992 |
T |
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| Q |
471 |
gcatcacctgaacaaaattaattacaagtaaacaccc |
507 |
Q |
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| T |
16176991 |
gcaccacccaaacaaaataaattacaagcatacaccc |
16176955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 38090935 - 38091011
Alignment:
| Q |
28 |
acatagttgatcttgatggaaagaaagcatctgcatcatgcaatagtgtacaagggtcatgctcttcttgtaatcca |
104 |
Q |
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| T |
38090935 |
acatagctggtcttggtggagagaagccatctgcatcgtgcaataatgtacaagggtcatgctcttcttgcaatcca |
38091011 |
T |
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