View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2726_low_7 (Length: 476)
Name: NF2726_low_7
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2726_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-110; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 50 - 466
Target Start/End: Complemental strand, 28213630 - 28213199
Alignment:
| Q |
50 |
ccataatgtttaataaatacatactagtaagcagcagtccatcatggacacagttgcatgaatataaggaatcaactttcaccttgaaattaatgtcaaa |
149 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||| ||||||||||||||| | |||||||||||||| |
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| T |
28213630 |
ccataatgtttaataaatacatactagtaagcagaagtccatcatggacacagttgcacggatatatggaatcaactttcacgtcaaaattaatgtcaaa |
28213531 |
T |
|
| Q |
150 |
tgtagatttaaatttaaattatatatgaaaataagaaaacttgaca-------caagtaatcaatatgatagaaagaatagatataatttagcacctaaa |
242 |
Q |
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|||||||| ||||||||| |||| |||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
28213530 |
tgtagattcaaatttaaactataaatgaaaataagaaaacttgacagttgacgcaagtaatcaatataatagaaagaatggatataatttagcacctaaa |
28213431 |
T |
|
| Q |
243 |
ttaataattggctataggttgatatcctcttgcattggtatcgtgatgagtatgaattcctacatcggatttgttccaagtatggtgtgatactcaaaga |
342 |
Q |
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|||||||||||| ||||||||| || ||| |||| |||||| |||||||||||||||||||| | |||||||||| |||| |||||||||||||||| |
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| T |
28213430 |
ctaataattggctgtaggttgatctcttctcgcatcggtatcatgatgagtatgaattcctacgtaggatttgttctaagtgcggtgtgatactcaaagg |
28213331 |
T |
|
| Q |
343 |
actaagagatgtttgaatatacac---------tctactctttgcattttcatccatcttacttgtaatggcagattggaattgagcaagtatttggata |
433 |
Q |
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||| || | | ||| ||||| ||| |||||||||| || |||||||||||||||||| |||| |||||||||| | ||||||| ||||| | |
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| T |
28213330 |
acttagggttatttaaatatccacattggtggttctactcttt-caatttcatccatcttacttgaaatgacagattggaaattagcaagttgttggaga |
28213232 |
T |
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| Q |
434 |
atataatccaacttttcagattgggatcctttg |
466 |
Q |
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|| | |||||||||||||||||||||||||||| |
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| T |
28213231 |
atctcatccaacttttcagattgggatcctttg |
28213199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 274 - 457
Target Start/End: Complemental strand, 32812235 - 32812052
Alignment:
| Q |
274 |
gcattggtatcgtgatgagtatgaattcctacatcggatttgttccaagtatggtgtgatactcaaagaactaagagatgtttgaatatacactctactc |
373 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32812235 |
gcattggtaacgtgatgagtatgaattcctacatcggatttgttccaagtatggtgtgatactcaaagaactaagagatgtttgaatatacactctactc |
32812136 |
T |
|
| Q |
374 |
tttgcattttcatccatcttacttgtaatggcagattggaattgagcaagtatttggataatataatccaacttttcagattgg |
457 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
32812135 |
tttccattttcatccatcttacttgtaatggcagattggaattgagcaagtatttggagaatataatctaacttttcagattgg |
32812052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 50 - 297
Target Start/End: Complemental strand, 32790283 - 32790044
Alignment:
| Q |
50 |
ccataatgtttaataaatacatactagtaagcagcagtccatcatggacacagttgcatgaatataaggaatcaactttcaccttgaaattaatgtcaaa |
149 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||||| |
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| T |
32790283 |
ccataatgtttaatgaatacatactagtaagcagcagtccatcatggacacagttgtgcggatataaggaatcaactttcacgtcgaaattaatgtcaaa |
32790184 |
T |
|
| Q |
150 |
tgtagatttaaatttaaattatatatgaaaataagaaaacttgacacaagtaatcaatatgatagaaagaatagatataatttagcacctaaattaataa |
249 |
Q |
| |
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||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||||||||| |
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| T |
32790183 |
tgtaggtttaaatttaaactatatatgaaaataagaaaacttgacacaagtaa--------ataaaaataatggatataatttagcacctaaattaataa |
32790092 |
T |
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| Q |
250 |
ttggctataggttgatatcctcttgcattggtatcgtgatgagtatga |
297 |
Q |
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|||||||||||||||| |||||| || |||||||| |||||||||||| |
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| T |
32790091 |
ttggctataggttgatctcctctcgcgttggtatcatgatgagtatga |
32790044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 50 - 211
Target Start/End: Complemental strand, 32812420 - 32812260
Alignment:
| Q |
50 |
ccataatgtttaataaatacatactagtaagcagcagtccatcatggacacagttgcatgaatataaggaatcaactttcaccttgaaattaatgtcaaa |
149 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| | | ||||| ||||||||||||||||||||||||||| ||||| |
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| T |
32812420 |
ccataatgtttaatgaatacatactagtaagcagcagtccatcatggacacagttacgcggatata-ggaatcaactttcaccttgaaattaatatcaaa |
32812322 |
T |
|
| Q |
150 |
tgtagatttaaatttaaattatatatgaaaataagaaaacttgacacaagtaatcaatatga |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32812321 |
tgtagatttaaatttaaattatatatgaaaataagaaaacttgacacaggtaatcaatatga |
32812260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 111 - 261
Target Start/End: Original strand, 32311205 - 32311355
Alignment:
| Q |
111 |
atataaggaatcaactttcaccttgaaattaatgtcaaatgtagatttaaatttaaattatatatgaaaataagaaaacttgacacaagtaatcaatatg |
210 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32311205 |
atataaggaatcaactttcatgtcgaaattaatgtcaaatgtaggttttaatttaaactatatatgaaaataagaaaacttgacacaagtaatcaatata |
32311304 |
T |
|
| Q |
211 |
atagaaagaatagatataatttagcacctaaattaataattggctataggt |
261 |
Q |
| |
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||| ||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
32311305 |
ataaaaataacggatataatttagcacctaaattaataattggctataggt |
32311355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 367 - 442
Target Start/End: Original strand, 32311355 - 32311430
Alignment:
| Q |
367 |
tctactctttgcattttcatccatcttacttgtaatggcagattggaattgagcaagtatttggataatataatcc |
442 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||| |
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| T |
32311355 |
tctactctatccattttcatccatcttacttgtattagcagattggaattgagcaagtatttggagaatataatcc |
32311430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 32799183 - 32799083
Alignment:
| Q |
50 |
ccataatgtttaataaatacatactagtaagcagcagtccatcatggacacagttgcatgaatataaggaatcaactttcaccttgaaattaatgtcaaa |
149 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||| | |||||||||||| | ||||||||||||||| ||||| | ||| ||||||| ||| |
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| T |
32799183 |
ccataatgtttgatgaatacatactagtaagcagcagtccattacggacacagttgcgcggatataaggaatcaaccttcacgtcgaacttaatgttaaa |
32799084 |
T |
|
| Q |
150 |
t |
150 |
Q |
| |
|
| |
|
|
| T |
32799083 |
t |
32799083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 367 - 442
Target Start/End: Complemental strand, 32790026 - 32789951
Alignment:
| Q |
367 |
tctactctttgcattttcatccatcttacttgtaatggcagattggaattgagcaagtatttggataatataatcc |
442 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||| ||||| |
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| T |
32790026 |
tctactctatccattttcatccatcttacttgtattggcagattggaattgagcaagtatttgaagaataaaatcc |
32789951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 32306827 - 32306908
Alignment:
| Q |
50 |
ccataatgtttaataaatacatactagtaagcagcagtccatcatggacacagttgcatgaatataaggaatcaactttcac |
131 |
Q |
| |
|
||||||||||| || ||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||| ||||| |
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|
| T |
32306827 |
ccataatgtttgatgaatacatactagtaagctacagtccatcatggacagagttgcgcagatataaggaatcaaccttcac |
32306908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 31783696 - 31783757
Alignment:
| Q |
70 |
atactagtaagcagcagtccatcatggacacagttgcatgaatataaggaatcaactttcac |
131 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
31783696 |
atactagtaagcagcagtccatcatggacacagttgcacggatataaggaatcaactttcac |
31783757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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