View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2726_low_8 (Length: 443)

Name: NF2726_low_8
Description: NF2726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2726_low_8
NF2726_low_8
[»] chr4 (5 HSPs)
chr4 (1-417)||(7217995-7218408)
chr4 (4-259)||(8161866-8162120)
chr4 (101-184)||(7317778-7317861)
chr4 (83-184)||(7243708-7243809)
chr4 (277-321)||(8161793-8161837)
[»] chr5 (1 HSPs)
chr5 (79-184)||(22766557-22766662)


Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 7218408 - 7217995
Alignment:
Q  1 agaataaagaaacatgaaaacatataaaagtaagaatttttaccaaaaaagatgaaaacattgaataaggtgtgattcagtaactaacccttataattgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7218408 agaataaagaaacatgaaaacatataaaagtaagaatttttaccaaaaaagatgaaaacattgaataaggtgtgattcagtaactaacccttataattgc 7218309  T
Q  101 atcgattacacatctcctcgatggaattcaggagagtgatgtcatgatcaattgcaagaaccttgagaccttctgggaatgatgcaggtttctcggtgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7218308 atcgattacacatctcctcgatggaattcaggagagtgatgtcatgatcaattgcaagaaccttgagaccttctgggaatgatgcaggtttgtcggtgaa 7218209  T
Q  201 aagggccattgcaattttgtcaagaaagtaacggaattagtttcttagggtagaagaatcttcaacacagtgtaatgttgagggaagaaaaagaatgagt 300  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7218208 aagggccattgcaattttgtcaagaaagtaacggaatgagtttcttagggtagaagaatcttcaacacagtgtaatgttgagggaagaaaaagaatgagt 7218109  T
Q  301 aaatcttgttcttcttggagaatgaatgtgctctgaacaagaaagtgatcaatgaaacttagggtttccttcaagaatagtatgagcgagtgatcctttg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||    
T  7218108 aaatcttgttcttcttggagaatgaatgtgctctgaacaagaaagtgatcaatgaaacttagggtttccttcaagaatagtatgagcgag---tcctttg 7218012  T
Q  401 aagagaactaaacacat 417  Q
    |||||||||||||||||    
T  7218011 aagagaactaaacacat 7217995  T

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Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 4 - 259
Target Start/End: Complemental strand, 8162120 - 8161866
Alignment:
Q  4 ataaagaaacatgaaaacatataaaagtaaga-atttttaccaaaaaagatgaaaacattgaataaggtgtgattcagtaactaacccttataattgcat 102  Q
    ||||| ||||||||||||| || ||||||||| ||||||||||||||||||| | || || |||||||| |||||||||| |||||| | ||||||||||    
T  8162120 ataaacaaacatgaaaacaaattaaagtaagatatttttaccaaaaaagatggatactttaaataaggtatgattcagtacctaaccttgataattgcat 8162021  T
Q  103 cgattacacatctcctcgatggaattcaggagagtgatgtcatgatcaattgcaagaaccttgagaccttctgggaatgatgcaggtttctcggtgaaaa 202  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||   ||||| ||  ||||||    
T  8162020 cgattacacatctcctcgatggaattaaggagagtgatgtcatgatcaattgcaaggacctagagaccttctgggaatgat---ggtttgtcaatgaaaa 8161924  T
Q  203 gggccattgcaattttgtcaagaaagtaacgga-attagtttcttagggtagaagaat 259  Q
    ||| |||||||||||||||| ||||| |||||| | ||  ||||||||||| ||||||    
T  8161923 gggtcattgcaattttgtcaggaaagaaacggatagtaagttcttagggtacaagaat 8161866  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 184
Target Start/End: Original strand, 7317778 - 7317861
Alignment:
Q  101 atcgattacacatctcctcgatggaattcaggagagtgatgtcatgatcaattgcaagaaccttgagaccttctgggaatgatg 184  Q
    ||||||||||||||||||| || || || |||| ||||||||||||||||||||||| ||||||||||||  ||||||||||||    
T  7317778 atcgattacacatctcctcaatagagttgaggaaagtgatgtcatgatcaattgcaataaccttgagaccggctgggaatgatg 7317861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 184
Target Start/End: Complemental strand, 7243809 - 7243708
Alignment:
Q  83 actaacccttataattgcatcgattacacatctcctcgatggaattcaggagagtgatgtcatgatcaattgcaagaaccttgagaccttctgggaatga 182  Q
    ||||||| | ||||| | ||||||||||||| ||||| || |  || || | |||||||||||||||||| |||| ||||||||||||  | ||||||||    
T  7243809 actaaccttgataatggaatcgattacacatatcctcaatagtgttaagaacagtgatgtcatgatcaatagcaataaccttgagaccagcagggaatga 7243710  T
Q  183 tg 184  Q
    ||    
T  7243709 tg 7243708  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 8161837 - 8161793
Alignment:
Q  277 gttgagggaagaaaaagaatgagtaaatcttgttcttcttggaga 321  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||||    
T  8161837 gttgaaggaagaaaaagaatgagcaaatcttattcttcttggaga 8161793  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 22766557 - 22766662
Alignment:
Q  79 agtaactaacccttataattgcatcgattacacatctcctcgatggaattcaggagagtgatgtcatgatcaattgcaagaaccttgagaccttctggga 178  Q
    ||||||||||| | |||||  |||||||||||||||||||| ||||  || |||| |||| |||||||||||||||||| ||| |||||||| || ||||    
T  22766557 agtaactaaccttgataatgacatcgattacacatctcctcaatggtgttaaggaaagtggtgtcatgatcaattgcaataacgttgagaccatcaggga 22766656  T
Q  179 atgatg 184  Q
    ||||||    
T  22766657 atgatg 22766662  T

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