View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2727-Insertion-2 (Length: 782)

Name: NF2727-Insertion-2
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2727-Insertion-2
NF2727-Insertion-2
[»] chr3 (9 HSPs)
chr3 (10-782)||(2821100-2821871)
chr3 (234-444)||(2834828-2835031)
chr3 (119-212)||(2809970-2810063)
chr3 (646-731)||(48196786-48196871)
chr3 (268-407)||(2771858-2771991)
chr3 (121-220)||(2800402-2800501)
chr3 (186-220)||(2771782-2771816)
chr3 (673-763)||(46574483-46574573)
chr3 (126-203)||(2835080-2835157)
[»] chr1 (4 HSPs)
chr1 (646-731)||(23539739-23539823)
chr1 (118-220)||(11114761-11114863)
chr1 (354-405)||(11114579-11114630)
chr1 (601-730)||(40569674-40569804)
[»] chr5 (1 HSPs)
chr5 (646-731)||(16397967-16398052)
[»] chr8 (1 HSPs)
chr8 (686-764)||(10723775-10723853)
[»] chr2 (1 HSPs)
chr2 (502-606)||(15999232-15999333)


Alignment Details
Target: chr3 (Bit Score: 681; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 10 - 782
Target Start/End: Original strand, 2821100 - 2821871
Alignment:
Q  10 ttggttctccacgatacagctcaaagtaaaatatttccactcatcctgcaataatcagcaaaaagtggatcccgttcactgagcgactctggcttcnnnn 109  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||        
T  2821100 ttggttctccacgatacagctcaaagtaaaatatttcctctcatcctgcaataatcagcaaaaagtggatcccattcactgagcgactgtggcttctttt 2821199  T
Q  110 nnnnnnnngtcatttgtggtgttgtataatttggttggagaagctttgactcaaaatcttgtaatcagggggtatttctggactccattcagacgtcttt 209  Q
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2821200 ttctttttgtcatttgtggtgttgtataatttggttggagaagctttgactcaaaatcttgtaatc-gggggtatttctggactccattcagacgtcttt 2821298  T
Q  210 ttgatatttctgttctttactgtttttaagattggtgagaactttacttcatctcttgtaataataatcaaaaccatttcatttgaatgaatttgtttat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821299 ttgatatttctgttctttactgtttttaagattggtgagaactttacttcatctcttgtaataataatcaaaaccatttcatttgaatgaatttgtttat 2821398  T
Q  310 tcggctaatcaagattgatgcaaatgctgctatcattacccagctgtaaatttatatgcctagttgatttgaagttaatcaggaggacatgtatgtatgt 409  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821399 tcggctaatcaagattgatgctaatgctgctatcattacccagctgtaaatttatatgcctagttgatttgaagttaatcaggaggacatgtatgtatgt 2821498  T
Q  410 gtctcagccaaccggtttcatccacccatcatttcttgattatttttgaaagctgaaaaaggaagtgtaagaatcatagaatatatcttatgatatcttt 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2821499 gtctcagccaaccggtttcatccacccatcatttcttgattatttttgaaagctgaaaaaggaagtgtaagaatcatagaatatatcttataatatcttt 2821598  T
Q  510 aatattgtattagagtatcggaagttatttcctgtgattagtttataaccttataagagtatctcttaggattagagtttatatatcttaatattatgat 609  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2821599 aatattgtattagagtatcggaagttatttcctgcaattagtttataaccttataagagcatctcttaggattagagtttatatatcttaatattatgat 2821698  T
Q  610 ttgttcttgatttaaggttgaatttgtctgtccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattc 709  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821699 ttgttcttgatttaaggttgaatttgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattc 2821798  T
Q  710 aaggttcttattattttctctcattattttctttaaaattccacaacttcaacaaaggtcttgtatagtttca 782  Q
    ||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||    
T  2821799 aaggttcttattattttctctcattcttatctttaaaatcccacaacttcaacaaaggtcttgtatagtttca 2821871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 234 - 444
Target Start/End: Complemental strand, 2835031 - 2834828
Alignment:
Q  234 tttaagattggtgagaactttacttcatctcttgtaataataat---caaaaccatttcatttgaatgaatttgtttattcggctaatcaagattgatgc 330  Q
    ||||||||||||| || |||| ||||| | ||||||||||||||   |||||||| ||||| ||||||||| | ||||||  ||||| || ||| |||||    
T  2835031 tttaagattggtgggagctttccttcaacccttgtaataataataatcaaaaccacttcatatgaatgaatatttttattttgctaaccacgatcgatgc 2834932  T
Q  331 aaatgctgctatcattacccagctgtaaatttatatgcctagttgatttgaagttaatcaggaggacatgtatgtatgtgtctcagccaaccggtttcat 430  Q
     |      ||||| |||   ||||||||||||| | ||||||||||||| |||| |||| ||| ||    |||||||| |||||||||||||||||||||    
T  2834931 ta------ctatcgttatgtagctgtaaatttaaacgcctagttgatttaaagtaaatctggacga----tatgtatgcgtctcagccaaccggtttcat 2834842  T
Q  431 ccacccatcatttc 444  Q
    ||| ||||||||||    
T  2834841 ccatccatcatttc 2834828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 212
Target Start/End: Original strand, 2809970 - 2810063
Alignment:
Q  119 tcatttgtggtgttgtataatttggttggagaagctttgactcaaaatcttgtaatcagggggtatttctggactccattcagacgtctttttg 212  Q
    ||||||| |||||| ||||||||| |||  |||| ||||| ||||||||||||||||| |  |||| ||| |||||||||| |||||| |||||    
T  2809970 tcatttgaggtgttttataatttgattgtggaagttttgattcaaaatcttgtaatcaagacgtatatctagactccattcggacgtcattttg 2810063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 646 - 731
Target Start/End: Original strand, 48196786 - 48196871
Alignment:
Q  646 taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc 731  Q
    |||| ||||||| | |||||| |||| ||||||| |||| ||| ||||| ||| ||||| |||| |||||||||||||||||||||    
T  48196786 taaacagggattagggtttagtcttttgtatcaacctactatcgagtcaatataaataatattccaggttcttattattttctctc 48196871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 268 - 407
Target Start/End: Original strand, 2771858 - 2771991
Alignment:
Q  268 taataataatcaaaaccatttcatttgaatgaatttgtttattcggctaatcaagattgatgcaaatgctgctatcattacccagctgtaaatttatatg 367  Q
    |||||||||||||||| | ||||||  ||||||| ||||||||  ||||| |||| ||||||| |      ||||||| | | |||||||| | || | |    
T  2771858 taataataatcaaaactacttcattcaaatgaatatgtttattttgctaaccaagcttgatgcta------ctatcataatctagctgtaactataaagg 2771951  T
Q  368 cctagttgatttgaagttaatcaggaggacatgtatgtat 407  Q
    ||||||||||||||||||||||  ||||| ||||||||||    
T  2771952 cctagttgatttgaagttaatcgagaggatatgtatgtat 2771991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 220
Target Start/End: Original strand, 2800402 - 2800501
Alignment:
Q  121 atttgtggtgttgtataatttggttggagaagctttgactcaaaatcttgtaatcagggggtatttctggactccattcagacgtctttttgatatttct 220  Q
    |||||||||||| |||||||| |||   |||||||||| |||||| |||||||||| |   ||| | |||||||||||||||| || ||| || ||||||    
T  2800402 atttgtggtgttttataatttagttttggaagctttgattcaaaaccttgtaatcaagacctatatttggactccattcagacatcatttggacatttct 2800501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 2771782 - 2771816
Alignment:
Q  186 tctggactccattcagacgtctttttgatatttct 220  Q
    ||||||||||||||||||||| |||||||||||||    
T  2771782 tctggactccattcagacgtcgttttgatatttct 2771816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 673 - 763
Target Start/End: Original strand, 46574483 - 46574573
Alignment:
Q  673 gtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctcattattttctttaaaattccacaacttcaaca 763  Q
    |||||||| ||| ||  ||||||||||||||  ||||||||||||||||||  ||||| ||| |||| | |||| |  |||||||||||||    
T  46574483 gtatcaaagtactattcagtcagtatcaatactattcaaggttcttattatcatctcttattcttttatctaaattctcacaacttcaaca 46574573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 2835157 - 2835080
Alignment:
Q  126 tggtgttgtataatttggttggagaagctttgactcaaaatcttgtaatcagggggtatttctggactccattcagac 203  Q
    ||||||| ||||||||||||   |||||||||| |||||| ||||||| || |   ||| ||||||||||||||||||    
T  2835157 tggtgttttataatttggttctggaagctttgattcaaaaccttgtaaccaagacctatatctggactccattcagac 2835080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 646 - 731
Target Start/End: Original strand, 23539739 - 23539823
Alignment:
Q  646 taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc 731  Q
    |||||||||||| | ||||||||||| | ||||| |||| ||||||||| ||||||||| |||||| | |||||||||||||||||    
T  23539739 taaatagggattagggtttagccttttggatcaagctactatcaagtca-tatcaataatattcaaaggtcttattattttctctc 23539823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 220
Target Start/End: Complemental strand, 11114863 - 11114761
Alignment:
Q  118 gtcatttgtggtgttgtataatttggttggagaagctttgactcaaaatcttgtaatcagggggtatttctggactccattcagacgtctttttgatatt 217  Q
    ||||||||||||||| |||||||||||||  ||| ||| || |||||| |||||||||| |   |||||||||| |||||||| | ||| |||||| |||    
T  11114863 gtcatttgtggtgttttataatttggttgtggaaacttcgattcaaaaccttgtaatcaagacctatttctggattccattcacatgtcattttgacatt 11114764  T
Q  218 tct 220  Q
    |||    
T  11114763 tct 11114761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 405
Target Start/End: Complemental strand, 11114630 - 11114579
Alignment:
Q  354 tgtaaatttatatgcctagttgatttgaagttaatcaggaggacatgtatgt 405  Q
    |||||||||| |||  | |||||||||||||||||||| |||||||||||||    
T  11114630 tgtaaatttagatgtgtggttgatttgaagttaatcagaaggacatgtatgt 11114579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 601 - 730
Target Start/End: Original strand, 40569674 - 40569804
Alignment:
Q  601 tattatgatttgttcttgatttaaggttgaatttgtctgtccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatca 700  Q
    |||| |||||||||||||||||| | |||| |  || | || || |||||||||||| |  || ||  ||| ||||||| |||| ||  || ||||||||    
T  40569674 tattttgatttgttcttgatttaggattgagtccgtgtatcgctataaatagggattagaattgagttttttgtatcaagctactattcagccagtatca 40569773  T
Q  701 ataacattca-aggttcttattattttctct 730  Q
    |||||||||  ||||||||||||||||||||    
T  40569774 ataacattccgaggttcttattattttctct 40569804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 646 - 731
Target Start/End: Complemental strand, 16398052 - 16397967
Alignment:
Q  646 taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc 731  Q
    |||||||||||| || ||||| |||||| ||||| |||| ||  | | |||||||| || |||||||||| |||||||||||||||    
T  16398052 taaatagggattagtatttagtctttgggatcaagctactattcaattagtatcaacaatattcaaggtttttattattttctctc 16397967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 686 - 764
Target Start/End: Complemental strand, 10723853 - 10723775
Alignment:
Q  686 atcaagtcagtatcaataacattcaaggttcttattattttctctcattattttctttaaaattccacaacttcaacaa 764  Q
    ||||||| | ||||||||| |||||| ||||||||||||||||||| |   ||| | ||||||| ||||| ||||||||    
T  10723853 atcaagttattatcaataatattcaaagttcttattattttctctcgtccatttatctaaaattgcacaatttcaacaa 10723775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 606
Target Start/End: Complemental strand, 15999333 - 15999232
Alignment:
Q  502 atatctttaatattgtattagagtatcggaagttatttcctgtgattagtttataaccttataagagtatctcttaggattagagtttatatatcttaat 601  Q
    |||||||  ||||| ||||| ||||||  ||||||| || | |||||||||||||| ||||   ||||||||||||||||| || |||||||  |||| |    
T  15999333 atatcttcgatattatattaaagtatcttaagttatgtcatatgattagtttataatctta---gagtatctcttaggatttgattttatattacttatt 15999237  T
Q  602 attat 606  Q
    |||||    
T  15999236 attat 15999232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University