View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2727-Insertion-3 (Length: 584)

Name: NF2727-Insertion-3
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2727-Insertion-3
NF2727-Insertion-3
[»] chr2 (5 HSPs)
chr2 (222-367)||(33613245-33613390)
chr2 (402-512)||(33613135-33613245)
chr2 (67-143)||(33613494-33613570)
chr2 (545-575)||(33613053-33613083)
chr2 (54-86)||(33613682-33613714)
[»] chr5 (10 HSPs)
chr5 (54-95)||(11539058-11539099)
chr5 (54-95)||(11494903-11494944)
chr5 (62-95)||(322000-322033)
chr5 (54-95)||(11502006-11502047)
chr5 (54-95)||(11509402-11509443)
chr5 (54-95)||(11516775-11516816)
chr5 (54-95)||(11524177-11524218)
chr5 (54-95)||(11531588-11531629)
chr5 (54-95)||(11562540-11562581)
chr5 (107-147)||(14023420-14023460)
[»] chr3 (2 HSPs)
chr3 (54-95)||(27007848-27007889)
chr3 (67-99)||(30807360-30807392)
[»] chr8 (1 HSPs)
chr8 (64-95)||(24546208-24546239)
[»] chr1 (4 HSPs)
chr1 (64-95)||(52293933-52293964)
chr1 (62-95)||(5521953-5521986)
chr1 (108-149)||(26506938-26506979)
chr1 (54-95)||(52293836-52293877)
[»] chr7 (1 HSPs)
chr7 (50-82)||(11274454-11274486)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 4e-67; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 222 - 367
Target Start/End: Complemental strand, 33613390 - 33613245
Alignment:
Q  222 caaaatgcctctcattatttaaaaactcgagataatcattaactaagtgaaaaatatgtgtctaaataattgtcacacaattttgaaaaatcaacagacc 321  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  33613390 caaaatgcctctcattatttaaaaattcgagacaatcattaactaagtgaaaaatatgagtctaaataattgtcacacaattttgaaaaataaacagacc 33613291  T
Q  322 ttatatattgataaatgtaatgtaaacaattaaattagctaatttt 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33613290 ttatatattgataaatgtaatgtaaacaattaaattagctaatttt 33613245  T

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Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 402 - 512
Target Start/End: Complemental strand, 33613245 - 33613135
Alignment:
Q  402 tatagtcagatctagaggtagtatacaatttgaaatttcgttaaaactaagagccacaatctagctctaaataatcaattttatcttacaaaatcaaaat 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33613245 tatagtcagatctagaggtagtatacaatttgaaatttcgttaaaaataagagccacaatctagctctaaataatcaattttatcttacaaaatcaaaat 33613146  T
Q  502 cagcttgtaag 512  Q
    |||||||||||    
T  33613145 cagcttgtaag 33613135  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 33613570 - 33613494
Alignment:
Q  67 aaattaacaacttaaaggatctatttgaagcttnnnnnnncttaaatgactagcttgatatttttgtcaaacttaaa 143  Q
    |||||||||||||||||||||||||||||||||       |||||| |||||||||||| |||||||||||||||||    
T  33613570 aaattaacaacttaaaggatctatttgaagcttaaaaaaacttaaaggactagcttgatgtttttgtcaaacttaaa 33613494  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 545 - 575
Target Start/End: Complemental strand, 33613083 - 33613053
Alignment:
Q  545 gtcgtgccataagggttggttggttagttga 575  Q
    |||||||||||||||||||||||||||||||    
T  33613083 gtcgtgccataagggttggttggttagttga 33613053  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 33613714 - 33613682
Alignment:
Q  54 aaataggagtattaaattaacaacttaaaggat 86  Q
    ||||||| |||||||||||||||||||||||||    
T  33613714 aaataggtgtattaaattaacaacttaaaggat 33613682  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 11539099 - 11539058
Alignment:
Q  54 aaataggagtattaaattaacaacttaaaggatctatttgaa 95  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  11539099 aaataggtgtattaaattaacaacttaaaggatctatttgaa 11539058  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 11494944 - 11494903
Alignment:
Q  54 aaataggagtattaaattaacaacttaaaggatctatttgaa 95  Q
    ||||||| | ||||||||||||||||||||||||||||||||    
T  11494944 aaataggtgcattaaattaacaacttaaaggatctatttgaa 11494903  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 95
Target Start/End: Original strand, 322000 - 322033
Alignment:
Q  62 gtattaaattaacaacttaaaggatctatttgaa 95  Q
    |||||||||||||||||||||||| |||||||||    
T  322000 gtattaaattaacaacttaaaggacctatttgaa 322033  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 11502047 - 11502006
Alignment:
Q  54 aaataggagtattaaattaacaacttaaaggatctatttgaa 95  Q
    ||||||| | |||||||||||||||||||| |||||||||||    
T  11502047 aaataggtgcattaaattaacaacttaaagcatctatttgaa 11502006  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 11509443 - 11509402
Alignment:
Q  54 aaataggagtattaaattaacaacttaaaggatctatttgaa 95  Q
    ||||||| | |||||||||||||||||||| |||||||||||    
T  11509443 aaataggtgcattaaattaacaacttaaagcatctatttgaa 11509402  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 11516816 - 11516775
Alignment:
Q  54 aaataggagtattaaattaacaacttaaaggatctatttgaa 95  Q
    ||||||| | |||||||||||||||||||| |||||||||||    
T  11516816 aaataggtgcattaaattaacaacttaaagcatctatttgaa 11516775  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 11524218 - 11524177
Alignment:
Q  54 aaataggagtattaaattaacaacttaaaggatctatttgaa 95  Q
    ||||||| | |||||||||||||||||||| |||||||||||    
T  11524218 aaataggtgcattaaattaacaacttaaagcatctatttgaa 11524177  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 11531629 - 11531588
Alignment:
Q  54 aaataggagtattaaattaacaacttaaaggatctatttgaa 95  Q
    ||||||| | |||||||||||||||||||| |||||||||||    
T  11531629 aaataggtgcattaaattaacaacttaaagcatctatttgaa 11531588  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 11562581 - 11562540
Alignment:
Q  54 aaataggagtattaaattaacaacttaaaggatctatttgaa 95  Q
    ||||||| | ||||||||||||||||||| ||||||||||||    
T  11562581 aaataggtgcattaaattaacaacttaaatgatctatttgaa 11562540  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 14023420 - 14023460
Alignment:
Q  107 cttaaatgactagcttgatatttttgtcaaacttaaatgac 147  Q
    |||||| |||||| ||||||||||| |||||||||||||||    
T  14023420 cttaaaagactagtttgatatttttatcaaacttaaatgac 14023460  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 27007889 - 27007848
Alignment:
Q  54 aaataggagtattaaattaacaacttaaaggatctatttgaa 95  Q
    ||||||| |||||||||||||||||||||||| |||||||||    
T  27007889 aaataggtgtattaaattaacaacttaaaggacctatttgaa 27007848  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 30807360 - 30807392
Alignment:
Q  67 aaattaacaacttaaaggatctatttgaagctt 99  Q
    ||||||||||||||||||| |||||||||||||    
T  30807360 aaattaacaacttaaaggacctatttgaagctt 30807392  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 95
Target Start/End: Original strand, 24546208 - 24546239
Alignment:
Q  64 attaaattaacaacttaaaggatctatttgaa 95  Q
    ||||||||||||||||||||||||||||||||    
T  24546208 attaaattaacaacttaaaggatctatttgaa 24546239  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 95
Target Start/End: Original strand, 52293933 - 52293964
Alignment:
Q  64 attaaattaacaacttaaaggatctatttgaa 95  Q
    ||||||||||||||||||||||||||||||||    
T  52293933 attaaattaacaacttaaaggatctatttgaa 52293964  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 95
Target Start/End: Complemental strand, 5521986 - 5521953
Alignment:
Q  62 gtattaaattaacaacttaaaggatctatttgaa 95  Q
    |||||||||||||||||||||||| |||||||||    
T  5521986 gtattaaattaacaacttaaaggacctatttgaa 5521953  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 26506979 - 26506938
Alignment:
Q  108 ttaaatgactagcttgatatttttgtcaaacttaaatgacta 149  Q
    |||||| |||| |||||||||||||||||||||||| |||||    
T  26506979 ttaaattactaacttgatatttttgtcaaacttaaaagacta 26506938  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 52293877 - 52293836
Alignment:
Q  54 aaataggagtattaaattaacaacttaaaggatctatttgaa 95  Q
    ||||||| | |||||||||||||||||||||| |||||||||    
T  52293877 aaataggtggattaaattaacaacttaaaggacctatttgaa 52293836  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 11274454 - 11274486
Alignment:
Q  50 cttaaaataggagtattaaattaacaacttaaa 82  Q
    ||||||||||||| |||||||||||||||||||    
T  11274454 cttaaaataggagcattaaattaacaacttaaa 11274486  T

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