View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2727-Insertion-4 (Length: 453)
Name: NF2727-Insertion-4
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727-Insertion-4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 72 - 194
Target Start/End: Complemental strand, 27525382 - 27525265
Alignment:
| Q |
72 |
aacttcaattgtgaacaatgttctcatttctttatttattttttggtacaacaatgttctcatttctatttaagataaagtgtttttcttttaagtattt |
171 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27525382 |
aacttcaattgtgaacaatgttctaattttttt-----ttttttggtacaacaatgttctcatttctatttaagataaagtgtttttcttttaagtattt |
27525288 |
T |
|
| Q |
172 |
ataccatataatgtggatgtttt |
194 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
27525287 |
ataccatatgatgtggatgtttt |
27525265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 27525489 - 27525411
Alignment:
| Q |
8 |
catccatgagtacatttattctgatattattgatattgaacaatgtttgttaaattgagttttcaacttcaattgtgaa |
86 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27525489 |
catccatgagtacatttattctgatattattgatattgaacaatgtttgttaaattgagttttcaacttcaattgtgaa |
27525411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 27525252 - 27525182
Alignment:
| Q |
178 |
tataatgtggatgttttaattatatgctaattaaaatgaaaaaattaacttggaaactccattgtcatttt |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27525252 |
tataatgtggatgttttaattatatgctaattaaaatgaaaaaattaacttggaaactccattgtcatttt |
27525182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University