View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2727-Insertion-5 (Length: 129)

Name: NF2727-Insertion-5
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2727-Insertion-5
NF2727-Insertion-5
[»] chr6 (2 HSPs)
chr6 (8-129)||(22611472-22611593)
chr6 (8-129)||(5652862-5652983)
[»] chr1 (1 HSPs)
chr1 (8-108)||(46039632-46039732)
[»] chr8 (3 HSPs)
chr8 (30-79)||(12772269-12772318)
chr8 (30-79)||(12791129-12791178)
chr8 (8-129)||(12811969-12812090)
[»] chr7 (1 HSPs)
chr7 (8-79)||(28500203-28500274)
[»] scaffold0003 (1 HSPs)
scaffold0003 (36-79)||(334587-334630)
[»] chr3 (1 HSPs)
chr3 (75-129)||(38396689-38396743)
[»] chr2 (2 HSPs)
chr2 (36-82)||(2115268-2115314)
chr2 (56-97)||(25524827-25524868)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 1e-60; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 22611593 - 22611472
Alignment:
Q  8 agcatcacatagaacacatagctcaaaggctttcttcaacaatccacttcttctctttgagaatgttacttgcctattgatcttattctctattctctcc 107  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22611593 agcatcacatagaacacaaagctcaaaggctttcttcaacaatccacttcttctctttgagaatgttacttgcctattgatcttattctctattctctcc 22611494  T
Q  108 aacactactcttcctcttccca 129  Q
    ||||||||||||||||||||||    
T  22611493 aacactactcttcctcttccca 22611472  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 5652983 - 5652862
Alignment:
Q  8 agcatcacatagaacacatagctcaaaggctttcttcaacaatccacttcttctctttgagaatgttacttgcctattgatcttattctctattctctcc 107  Q
    ||||||||| |||||| |||  ||| | |||||||| |  | |||| ||||||||||||  ||||||||||| || || |||||||||||||| || | |    
T  5652983 agcatcacaaagaacagataattcataagctttcttaagaagtccatttcttctctttgcaaatgttacttgtctgtttatcttattctctatccttttc 5652884  T
Q  108 aacactactcttcctcttccca 129  Q
    ||  | ||||||||||||||||    
T  5652883 aattccactcttcctcttccca 5652862  T

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Target: chr1 (Bit Score: 53; Significance: 8e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 46039632 - 46039732
Alignment:
Q  8 agcatcacatagaacacatagctcaaaggctttcttcaacaatccacttcttctctttgagaatgttacttgcctattgatcttattctctattctctcc 107  Q
    |||||||||||  ||| | || ||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| || | ||||||||||    
T  46039632 agcatcacataacacagaaagttcaaaagctttcttcaacaaaccacttcttctctttgaaaatgttacttgtctattgatcttgttatgtattctctcc 46039731  T
Q  108 a 108  Q
    |    
T  46039732 a 46039732  T

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Target: chr8 (Bit Score: 38; Significance: 0.0000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 12772318 - 12772269
Alignment:
Q  30 tcaaaggctttcttcaacaatccacttcttctctttgagaatgttacttg 79  Q
    |||||||| ||||||||||| ||| |||||||||||||||||||||||||    
T  12772318 tcaaaggccttcttcaacaaaccatttcttctctttgagaatgttacttg 12772269  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 12791178 - 12791129
Alignment:
Q  30 tcaaaggctttcttcaacaatccacttcttctctttgagaatgttacttg 79  Q
    |||||||| ||||||||||| ||| |||||||||||||||||||||||||    
T  12791178 tcaaaggccttcttcaacaaaccatttcttctctttgagaatgttacttg 12791129  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 12811969 - 12812090
Alignment:
Q  8 agcatcacatagaacacatagctcaaaggctttcttcaacaatccacttcttctctttgagaatgttacttgcctattgatcttattctctattctctcc 107  Q
    ||||||||| |||||| | || ||| | |||||||| | ||| ||| ||||||| |||||||| ||||| ||||  || || || ||||||||||||| |    
T  12811969 agcatcacagagaacagacagttcataagctttcttgagcaaaccatttcttctttttgagaaagttacctgccggtttattttgttctctattctcttc 12812068  T
Q  108 aacactactcttcctcttccca 129  Q
    ||  | ||||||||||||||||    
T  12812069 aattcaactcttcctcttccca 12812090  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 28500203 - 28500274
Alignment:
Q  8 agcatcacatagaacacatagctcaaaggctttcttcaacaatccacttcttctctttgagaatgttacttg 79  Q
    ||||||||| |||||| |||||||||| |||||||||||||| ||| | |  |||||||||||||| |||||    
T  28500203 agcatcacagagaacagatagctcaaatgctttcttcaacaaaccattacgcctctttgagaatgtcacttg 28500274  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 334587 - 334630
Alignment:
Q  36 gctttcttcaacaatccacttcttctctttgagaatgttacttg 79  Q
    |||||||||||||| ||||||||||||||||| ||||| |||||    
T  334587 gctttcttcaacaacccacttcttctctttgaaaatgtaacttg 334630  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 38396743 - 38396689
Alignment:
Q  75 acttgcctattgatcttattctctattctctccaacactactcttcctcttccca 129  Q
    ||||| || |||||||| ||||| ||||||| |||| ||||||||||||||||||    
T  38396743 acttgtctgttgatcttgttctcaattctcttcaactctactcttcctcttccca 38396689  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 2115314 - 2115268
Alignment:
Q  36 gctttcttcaacaatccacttcttctctttgagaatgttacttgcct 82  Q
    |||||||||||||||||| ||||||| |||||||| || ||||||||    
T  2115314 gctttcttcaacaatccatttcttctttttgagaaagtcacttgcct 2115268  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 25524868 - 25524827
Alignment:
Q  56 tcttctctttgagaatgttacttgcctattgatcttattctc 97  Q
    |||||||||||| || |||||||||||||||||||| |||||    
T  25524868 tcttctctttgaaaaagttacttgcctattgatcttgttctc 25524827  T

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