View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2727R-Insertion-1 (Length: 904)
Name: NF2727R-Insertion-1
Description: NF2727R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727R-Insertion-1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 8 - 838
Target Start/End: Original strand, 28102118 - 28102944
Alignment:
| Q |
8 |
agtaacaacagcatcaagacgcttatgaactggaatacgtgtgagtagtttagcagcattgctagcaccaaaaaccttatgaactgcagcaaaatgagca |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28102118 |
agtaacaacagcatcaagacgcttatgaactggaatacgtgtgagtagtttagcagcattgctagcaccaaaaaccttatgaactgcagcaaaatgagca |
28102217 |
T |
|
| Q |
108 |
cttccttgacctgatgactcaaaatatggtgcaaatatgcaacaacctttcacacactttcttctcaaaaacttgcaggctccacaaggtccaccaccct |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28102218 |
cttccttgacctgatgactcaaaatatggtgcaaatatgcaacaacctttcacacactttctcctcaaaaacttgcaggctccacaaggtccaccaccct |
28102317 |
T |
|
| Q |
208 |
catcaccacatcccaaattcannnnnnnnnnnnnnnnnaaactctgctgacagattttcttgtgtccccctctcttattcaagatcaaccaagttttgtg |
307 |
Q |
| |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28102318 |
catcaccacatcccaaatccatctctctctctctct--aaactctgctgacagattttcttgtgtccccctctcttattcaagatcaaccaagttttgtg |
28102415 |
T |
|
| Q |
308 |
gacatgccctttataaaatatataagtctagtcatgtcatgagaaggttacttgtactgcatnnnnnnntaaaagatattcatagtagttacctatttta |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28102416 |
gacatgccctttataaaatatataagtctagtcatgtcatgagaaggttacttgtactgcataaaaaaataaaagatattcatagtagttacctatttta |
28102515 |
T |
|
| Q |
408 |
tttcnnnnnnnnn-cttcaaattcttatgagaaaaataaagtttgatcaatcttattgtctcactaaaaattcaatcaaacttttatcctctcaaacaat |
506 |
Q |
| |
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|||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28102516 |
tttcttttttttttcttcaaattcttatgagataa-----gtttgatcaatcttattgtctcactaaaaattcaatcaaacttttatcctctcaaacaat |
28102610 |
T |
|
| Q |
507 |
tcattattaattgacgattattaatcacttgagttcaacaatctgattatttaattaagtatatagctatataagcacatgatgtaacatgtttcaacta |
606 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
28102611 |
tcattattaatcgacgattattaatcacttgagttcaacaatctgattatttaactaagtatatagctatataagcacatgaggtaacatgtttcaacta |
28102710 |
T |
|
| Q |
607 |
aaccctcatttcaaatctgtaatgtgtttgccacttcagttagccacaaaaacaaagtaaaacattccttggatgtatcttctatt--aaacacttcaat |
704 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28102711 |
aaccctcatttcaaatgtgtaatgtgtttgccacttcagctagccacaaaaacaaagtaaaacattccttggatgtatcttctattaaaaacacttcaat |
28102810 |
T |
|
| Q |
705 |
tccttccccaaaccatttttgataaaggtgtttatttgatcaatttagttagcgaaatgctaataaatgttttaaaaacacttgttaagaaacttaaaaa |
804 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28102811 |
tccttccccaaaccatttttgataaaggtgtttattttgtcaatttagttagcgaaatgctaataaatgttctaaaaacacttgttaagaaacttaaaaa |
28102910 |
T |
|
| Q |
805 |
agaaagtttatcttattaatgatgcattcaacac |
838 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
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|
| T |
28102911 |
agaaaatttatcttattaatgatgcattcaacac |
28102944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 7e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 13286972 - 13286781
Alignment:
| Q |
8 |
agtaacaacagcatcaagacgcttatgaactggaatacgtgtgagtagtttagcagcattgctagcaccaaaaaccttatgaactgcagcaaaatgagca |
107 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||| |||||| |||| ||||| ||||||||||| || ||||||||||| ||||||||| | |
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| T |
13286972 |
agtaacaacagcatcaagacgtttatgagctggaatacgcatgagtaacttagaggcattactagcaccaaacactttatgaactgctgcaaaatgaacc |
13286873 |
T |
|
| Q |
108 |
cttccttgacctgatgactcaaaatatggtgcaaatatgcaacaacctttcacacactttcttctcaaaaacttgcaggctccacaaggtccaccacc |
205 |
Q |
| |
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||||||| | ||| ||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| || |||||||| |||||||| |
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| T |
13286872 |
gttccttggtc---tgaatcaaaatatggtgcaaatatg---caaccttttacacactttctcctcaaaaacttgcaagcaccacaaggcccaccacc |
13286781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 783 - 838
Target Start/End: Original strand, 9596294 - 9596349
Alignment:
| Q |
783 |
cacttgttaagaaacttaaaaaagaaagtttatcttattaatgatgcattcaacac |
838 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| |||||| ||||||||| |
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| T |
9596294 |
cacttgttaagaagcttaaaaaagaaagtttatcttagagatgatgtattcaacac |
9596349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 767 - 808
Target Start/End: Complemental strand, 29110866 - 29110825
Alignment:
| Q |
767 |
ataaatgttttaaaaacacttgttaagaaacttaaaaaagaa |
808 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||| |
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|
| T |
29110866 |
ataaatgctttaaaaacacttgttaagaaatttaaaaaagaa |
29110825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 783 - 838
Target Start/End: Original strand, 24093783 - 24093838
Alignment:
| Q |
783 |
cacttgttaagaaacttaaaaaagaaagtttatcttattaatgatgcattcaacac |
838 |
Q |
| |
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||||||||||||| ||||||| |||||||||||||| ||||||| ||||||||| |
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| T |
24093783 |
cacttgttaagaagcttaaaagagaaagtttatcttgggaatgatgtattcaacac |
24093838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 786 - 819
Target Start/End: Complemental strand, 6963715 - 6963682
Alignment:
| Q |
786 |
ttgttaagaaacttaaaaaagaaagtttatctta |
819 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |
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| T |
6963715 |
ttgttaagaaacttaaaagagaaagtttatctta |
6963682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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