View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2727R-Insertion-13 (Length: 132)

Name: NF2727R-Insertion-13

Description: NF2727R

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2727R-Insertion-13

[»] chr7 (5 HSPs)

Alignment Details

Target: chr7 (Bit Score: 116; Significance: 2e-59; HSPs: 5)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 116; E-Value: 2e-59

Query Start/End: Original strand, 9 - 132

Target Start/End: Original strand, 42848880 - 42849002

Alignment:

Q	9	ctatttggtgagtttcaggccattgctgttgtgaaacctctattcttgcattctctatggatataacttgattaggcttataattctttcccttctttac	108	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42848880	ctatttggtgagtttcaggccattgctgttgtgaaacctctattcttgcattctctatggatataactt-attaggcttataattctttcccttctttac	42848978	T

Q	109	taggaattgtcaattcattgcgtg	132	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42848979	taggaattgtcaattcattgcgtg	42849002	T

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Target: chr7; HSP #2

Raw Score: 94; E-Value: 3e-46

Query Start/End: Original strand, 15 - 132

Target Start/End: Original strand, 42855528 - 42855645

Alignment:

Q	15	ggtgagtttcaggccattgctgttgtgaaacctctattcttgcattctctatggatataacttgattaggcttataattctttcccttctttactaggaa	114	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42855528	ggtgaatttcaggccattgctgttgtgaaacctctattcttgcattccccaaagatataacttgattaggcttataactctttcccttctttactaggaa	42855627	T

Q	115	ttgtcaattcattgcgtg	132	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42855628	ttgtcaattcattgcgtg	42855645	T

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Target: chr7; HSP #3

Raw Score: 44; E-Value: 2e-16

Query Start/End: Original strand, 11 - 58

Target Start/End: Original strand, 42857117 - 42857164

Alignment:

Q	11	atttggtgagtttcaggccattgctgttgtgaaacctctattcttgca	58	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42857117	atttggtgaatttcaggccattgctgttgtgaaacctctattcttgca	42857164	T

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Target: chr7; HSP #4

Raw Score: 36; E-Value: 0.00000000001

Query Start/End: Original strand, 95 - 130

Target Start/End: Original strand, 42857184 - 42857219

Alignment:

Q	95	tttcccttctttactaggaattgtcaattcattgcg	130	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42857184	tttcccttctttactaggaattgtcaattcattgcg	42857219	T

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Target: chr7; HSP #5

Raw Score: 29; E-Value: 0.0000002

Query Start/End: Original strand, 84 - 128

Target Start/End: Original strand, 42861513 - 42861557

Alignment:

Q	84	gcttataattctttcccttctttactaggaattgtcaattcattg	128	Q
		\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|
T	42861513	gcttataactatttcccttctttactaggaactgacaattcattg	42861557	T

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