View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2727R-Insertion-3 (Length: 811)
Name: NF2727R-Insertion-3
Description: NF2727R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727R-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 42 - 432
Target Start/End: Original strand, 46726001 - 46726391
Alignment:
| Q |
42 |
aaatcaaaatggtggcaaaagcatcatcatacgaagagagtcgccgcaagagaatggaagagaatcaaaagagaatggaagctctgaatcttaccaagct |
141 |
Q |
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| T |
46726001 |
aaatcaaaatggtggcaaaagcatcatcatacgaagagagtcgccgcaagagaatggaagagaatcaaaagagaatggaagctctgagtcttaccaagct |
46726100 |
T |
|
| Q |
142 |
ctctcaatctcttcacaaatcatcttcccccatttcaaaaccctcaccttccaaacctcgcactcctatcaagaaagagctcgttgttgttcgaagatcc |
241 |
Q |
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| T |
46726101 |
ctctcaatctcttcacaaatcatcttcccccatttcaaaaccctcaccttccaaacctcgcactcctatcaagaaagagctcgttgttgttcgaagatcc |
46726200 |
T |
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| Q |
242 |
ggccgtgtcgccaatatgcctgctcctgtttacaaagaagtctgtaactgtaaaccctaacccacattcaccatttcatctttctctctctaactttatt |
341 |
Q |
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| T |
46726201 |
ggccgtgtcgccaatatgcctgctcctgtttacaaagaagtctgtaactgtaaaccctaacccacattcaccatttcatctttctctctctaactttatt |
46726300 |
T |
|
| Q |
342 |
tcnnnnnnncacagattcttattgattccgttaaaatacctaggaatagaatttcaaggtttgttcattcttctgtggaatcacatttgta |
432 |
Q |
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| T |
46726301 |
tctttttttcacagattcttattgattccgttaagatacctagaaatagaatttcaaggtttgttctttcttctgtggaatcacatttgta |
46726391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 473 - 677
Target Start/End: Original strand, 46726434 - 46726638
Alignment:
| Q |
473 |
gtgagtagatgtggtggatatgataagtacagggattattcgaagcgggtgtatgcgtcggacgaagctagaatcgaagcaatggagaatgctgataagt |
572 |
Q |
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| T |
46726434 |
gtgagtagatgtggtggatatgataagtacagggattattcgaagcgggtgtatgcgtcggacgaagctagaatggaagcaatggagaaggctgataagt |
46726533 |
T |
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| Q |
573 |
tgctgtccgatttagattctgatcatccaacttttgtcaagtcaatgctccaatctcatgtcactggtggattctggctggtataatttctattctatta |
672 |
Q |
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| T |
46726534 |
tgctgtccgatttagattctgatcatccaacttttgtcaagtcaatgctccaatctcatgtcactggtggattctggctggtataatttctattctagta |
46726633 |
T |
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| Q |
673 |
agcac |
677 |
Q |
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| T |
46726634 |
agcac |
46726638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 751 - 811
Target Start/End: Original strand, 46726713 - 46726773
Alignment:
| Q |
751 |
atgaagcttactttgcatcactgaaagtttacaatttattacaaggttgttaaaaaatggg |
811 |
Q |
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| T |
46726713 |
atgaagctcactttgcatcactgaaagtttacaattttttataaggttgttaaaaaatggg |
46726773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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