View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2727R-Insertion-4 (Length: 757)
Name: NF2727R-Insertion-4
Description: NF2727R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727R-Insertion-4 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 725; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 725; E-Value: 0
Query Start/End: Original strand, 9 - 757
Target Start/End: Original strand, 9833582 - 9834330
Alignment:
| Q |
9 |
ttgattaagggtggattccctagtggaaaatacttgttcgctggagtagttgatggaaggaacatttgggctaatgatcttacttcgtctctgattacat |
108 |
Q |
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| T |
9833582 |
ttgattaaggggggattccctagtggaaaatacttgttcgctggagtagttgatggaaggaacatttgggctaatgatcttacttcttctctgattacat |
9833681 |
T |
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| Q |
109 |
taaacgggctggaggagattgtcggcaaaggtatttcatcaaagatgcatttcgtgaatatttggctagaaaaaacttataagcatttaattaaactatt |
208 |
Q |
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| T |
9833682 |
taaacgggctggaggagattgtcggcaaaggtatttcatcaaagatgcatttcgtgaatatttggctagaaaaaacttataagcatttaattaaactatt |
9833781 |
T |
|
| Q |
209 |
tatccaaacagtcataatactgtcacttgaaatatctattttacaaaaacgtgtgcagataaactcgttgtgtcaacctcttgctcacttctccacactg |
308 |
Q |
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| T |
9833782 |
tatccaaacagtcataatactgtcacttgaaatatctattttacaaaaacgtgtgcagataaactcgttgtgtcaacctcttgctcacttctccacactg |
9833881 |
T |
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| Q |
309 |
ctgttgatcttgttaacgagaccaagctggataatgagattaaatcatggctagcttttgctgcccaaaaagtcgttgaagtaaatgcattggccaaggc |
408 |
Q |
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| T |
9833882 |
ctgttgatcttgttaacgagaccaagctggataatgagattaaatcatggctagcttttgctgcgcaaaaagtcgttgaagtaaatgcattggccaaggc |
9833981 |
T |
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| Q |
409 |
attggctggtcaaaaggatgagggaatcaaccttcttttcctttatcatacatcaaacaaaacttgataacaaaattgcatcttagttaatttttatcta |
508 |
Q |
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| T |
9833982 |
attggctggtcaaaaggatgaggtaatcaaccttcttttcctttatcatacatcaaacaaaacttgataacaaaattgcatcttagttaatttttatcta |
9834081 |
T |
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| Q |
509 |
tcttccaacttatttaatttttgttttaattcattattcactcaatcaaatcattgtttcatttgcaggccttcttctcttctaattctgcagctctcgc |
608 |
Q |
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| T |
9834082 |
tcttccaacttatttaatttttgttttaattcattattcactcaatcaaatcattgtttcatttgcaggccttcttctcttctaattctgcagctctcgc |
9834181 |
T |
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| Q |
609 |
ttcaagaaagtcctctccaagagtgactaacgagggtgttcagaaggctgtgagtgtttaactgctcattcctcttgagtcagaattgtgaaaaagaaat |
708 |
Q |
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| T |
9834182 |
ttcaagaaagtcctctccaagagtgactaacgagggtgttcagaaggctgtgagtgtttaactgctcattcctctagagtcagaattgtgaaaaagaaat |
9834281 |
T |
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| Q |
709 |
cactctcatgttacttatgacttattttctttccctcgtagactgctgc |
757 |
Q |
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| T |
9834282 |
cactctcatgttacttatgacttattttctttccctcgcagactgctgc |
9834330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 3e-41; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 275 - 405
Target Start/End: Complemental strand, 33468773 - 33468643
Alignment:
| Q |
275 |
gttgtgtcaacctcttgctcacttctccacactgctgttgatcttgttaacgagaccaagctggataatgagattaaatcatggctagcttttgctgccc |
374 |
Q |
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| T |
33468773 |
gttgtgtccacttcttgctcacttcttcacactgctgtggatctcgttaacgagaccaagttggatgatgaaattaagtcatggttagcttttgctgccc |
33468674 |
T |
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| Q |
375 |
aaaaagtcgttgaagtaaatgcattggccaa |
405 |
Q |
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| T |
33468673 |
aaaaagttgttgaagtaaatgcattggccaa |
33468643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 564 - 664
Target Start/End: Complemental strand, 33468202 - 33468102
Alignment:
| Q |
564 |
gtttcatttgcaggccttcttctcttctaattctgcagctctcgcttcaagaaagtcctctccaagagtgactaacgagggtgttcagaaggctgtgagt |
663 |
Q |
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| T |
33468202 |
gtttcattttcaggccatcttctctgcaagttctgcagctcaggcttcaaggaagtcctctccaagagtgactaatgaggctgttcagaaggctgtgagt |
33468103 |
T |
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| Q |
664 |
g |
664 |
Q |
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| T |
33468102 |
g |
33468102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 33468964 - 33468923
Alignment:
| Q |
48 |
gctggagtagttgatggaaggaacatttgggctaatgatctt |
89 |
Q |
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| T |
33468964 |
gctggagtcgttgatggaaggaacatctgggcaaatgatctt |
33468923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 296 - 431
Target Start/End: Original strand, 35946784 - 35946919
Alignment:
| Q |
296 |
cttctccacactgctgttgatcttgttaacgagaccaagctggataatgagattaaatcatggctagcttttgctgcccaaaaagtcgttgaagtaaatg |
395 |
Q |
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||||| |||||||| |||||||| || || |||||||||||||| | || |||||||| ||||| |||||||| || |||||| | ||||||||||||| |
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| T |
35946784 |
cttcttcacactgcagttgatctggtgaatgagaccaagctggaccaagaaattaaatcttggcttgcttttgcagcacaaaaaatagttgaagtaaatg |
35946883 |
T |
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| Q |
396 |
cattggccaaggcattggctggtcaaaaggatgagg |
431 |
Q |
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| T |
35946884 |
ccttgtccaaggcattgtctggacaaaaggatgagg |
35946919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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