View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2727R-Insertion-5 (Length: 678)
Name: NF2727R-Insertion-5
Description: NF2727R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727R-Insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 9 - 464
Target Start/End: Original strand, 17109800 - 17110266
Alignment:
| Q |
9 |
tgttacatgtatatccaagaaacagatgtggagtcttttcccaatcaagggttgattccactctctcttaccactctaaatatcactggttgtcaaaatc |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109800 |
tgttacatgtatatccaagaaacagatgtggagtcttttcccaatcaagggttgattccactctctcttaccactctaaatatcactggttgtcaaaatc |
17109899 |
T |
|
| Q |
109 |
tcaaacaacttgactacaagggtctcgaccacctcccctctctttcatcattaactcttaaaaactgtcccaacataaaacgtttaccgaaggagggtct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109900 |
tcaaacaacttgactacaagggtctcgaccacctcccctctctttcatcattaactcttaaaaactgtcccaacataaaacgtttaccgaaggagggtct |
17109999 |
T |
|
| Q |
209 |
acctagatccatatcaactttacagattttggggaactgtccattccttttagaaagatgcaagaaaccttatggaa-----------aggattgcgcat |
297 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
17110000 |
acctagatccatatcaactttacagatttcggggaactgtccattccttttagaaagatgcaagaaaccttatggaaaggattgcgagaggattgcgcat |
17110099 |
T |
|
| Q |
298 |
attcaatgtataatgattgacgatcctgagagggaccaacagtcatagtgcccaacaattactcaggtacctactatttacatgttttcttttggtatat |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17110100 |
attcaatgtataatgattgacgatcctgagagggaccaacagtcatagtgcccaacaattactcaggtacctactatttacatgttttcttttggtatat |
17110199 |
T |
|
| Q |
398 |
ctcatatcaagtggtgcagatttatattcaaatagtatttacttgaactggacccactttaaaatga |
464 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17110200 |
ctcatatcaagtggtgcagatttatattcaaatagtatttacttgaactggacccactttaaaatga |
17110266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 463 - 678
Target Start/End: Original strand, 17110288 - 17110503
Alignment:
| Q |
463 |
gatcagtgggatttatgttgtaatctgaaatgcagtgtttaaatacaaatttgtaccctgtaaatcccaagtgggtaataatataaatcaatacagttgg |
562 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
17110288 |
gatcagtgggatttatgttgtaatctgaaatgcagtgtttaaatacaaatttgtaccctgtaaatcctaagtgggtaataatataaatcaatacagttgg |
17110387 |
T |
|
| Q |
563 |
agacgtacacacaattggccgagcttaattagttaccaaacttcgtgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctg |
662 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17110388 |
agacgtacacgcaattggccgagcttaattagttaccaaacgtcgtgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctg |
17110487 |
T |
|
| Q |
663 |
ttctaacactatctga |
678 |
Q |
| |
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|||||||||||||||| |
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| T |
17110488 |
ttctaacactatctga |
17110503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 17030345 - 17030608
Alignment:
| Q |
14 |
catgtatatccaagaaacagatgtggagtcttttcccaatcaagggttgattccactctctcttaccactctaaatatcactggttgtcaaaatctcaaa |
113 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||||||| |||||||| |||||||||| |
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| T |
17030345 |
catgtatattcaagaagcagatgtggagtcttttcctaatcaagggttgcttcccctctctcttacttatctaaatatccgtggttgtcgaaatctcaaa |
17030444 |
T |
|
| Q |
114 |
caacttgactacaagggtctcgaccacctcccctctctttcatcattaactcttaaaaactgtcccaacataaaacgtttaccgaaggagggtctaccta |
213 |
Q |
| |
|
|||||||||||||||||||| || |||| ||||||||| | |||| | ||| || || ||||||||||| || | || || ||||||||||| |||| |
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| T |
17030445 |
caacttgactacaagggtcttgagaaccttccctctcttagaacattgagtctaaataattgtcccaacatccaatgcttgccaaaggagggtcttccta |
17030544 |
T |
|
| Q |
214 |
gatccatatcaactttacagattttggggaactgtccattccttttagaaagatgcaagaaacc |
277 |
Q |
| |
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|||||| |||||| |||| || |||||||| ||| || | ||| | || ||||||||||||| |
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|
| T |
17030545 |
aatccatttcaactctacaaatattggggaattgttcactgcttaaacaacgatgcaagaaacc |
17030608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 17048683 - 17048946
Alignment:
| Q |
14 |
catgtatatccaagaaacagatgtggagtcttttcccaatcaagggttgattccactctctcttaccactctaaatatcactggttgtcaaaatctcaaa |
113 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||||||| |||||||| |||||||||| |
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| T |
17048683 |
catgtatattcaagaagcagatgtggagtcttttcctaatcaagggttgcttcccctctctcttacttatctaaatatccgtggttgtcgaaatctcaaa |
17048782 |
T |
|
| Q |
114 |
caacttgactacaagggtctcgaccacctcccctctctttcatcattaactcttaaaaactgtcccaacataaaacgtttaccgaaggagggtctaccta |
213 |
Q |
| |
|
|||||||||||||||||||| || |||| ||||||||| | |||| | ||| || || ||||||||||| || | || || ||||||||||| |||| |
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| T |
17048783 |
caacttgactacaagggtcttgagaaccttccctctcttagaacattgagtctaaataattgtcccaacatccaatgcttgccaaaggagggtcttccta |
17048882 |
T |
|
| Q |
214 |
gatccatatcaactttacagattttggggaactgtccattccttttagaaagatgcaagaaacc |
277 |
Q |
| |
|
|||||| |||||| |||| || |||||||| ||| || | ||| | || ||||||||||||| |
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|
| T |
17048883 |
aatccatttcaactctacaaatattggggaattgttcactgcttaaacaacgatgcaagaaacc |
17048946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 16978472 - 16978736
Alignment:
| Q |
13 |
acatgtatatccaagaaacagatgtggagtcttttcccaatcaagggttgattccactctctcttaccactctaaatatcactggttgtcaaaatctcaa |
112 |
Q |
| |
|
|||||||||| |||||| ||||||||||| |||||| |||||||||||| |||| |||||||||| ||||||||| |||||||| ||||||||| |
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| T |
16978472 |
acatgtatattcaagaattagatgtggagttttttcctaatcaagggttgcttcctatctctcttacttatctaaatatttgtggttgtcgaaatctcaa |
16978571 |
T |
|
| Q |
113 |
acaacttgactacaagggtctcgaccacctcccctctctttcatcattaactcttaaaaactgtcccaacataaaacgtttaccgaaggagggtctacct |
212 |
Q |
| |
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||||||||||||||||||||| || |||| ||||||||| | |||| | ||| || || ||||||||||| || | || || ||||||||||| ||| |
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| T |
16978572 |
acaacttgactacaagggtcttgagaaccttccctctcttagaacattgagtctaaataattgtcccaacatccaatgcttgccaaaggagggtctgcct |
16978671 |
T |
|
| Q |
213 |
agatccatatcaactttacagattttggggaactgtccattccttttagaaagatgcaagaaacc |
277 |
Q |
| |
|
| |||||| |||||| |||| || |||||||| ||| || | ||| | || ||||||||||||| |
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|
| T |
16978672 |
aaatccatttcaactctacaaatattggggaattgttcactgcttaaacaacgatgcaagaaacc |
16978736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 608 - 678
Target Start/End: Original strand, 17126147 - 17126216
Alignment:
| Q |
608 |
tgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctgttctaacactatctga |
678 |
Q |
| |
|
||||||||||||||||||||||| || |||| ||||||| ||||| |||| |||||||||||||||||| |
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|
| T |
17126147 |
tgtgttcattgtttgcgttttttga-atttttactcttttgaactagggttgatgttctaacactatctga |
17126216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 14313962 - 14314008
Alignment:
| Q |
33 |
gatgtggagtcttttcccaatcaagggttgattccactctctcttac |
79 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||| ||||||||| |
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|
| T |
14313962 |
gatgtggagtcttttcccgatcaagggttgcttccacgctctcttac |
14314008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 670
Target Start/End: Original strand, 35052192 - 35052265
Alignment:
| Q |
595 |
ttaccaaacttcgtgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctgttctaaca |
670 |
Q |
| |
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||||||||| ||||||||||||||||||| |||||| |||||||| ||||||| || || |||||||||||||| |
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|
| T |
35052192 |
ttaccaaacaacgtgtgttcattgtttgcg-tttttcgtatctttattcttttgaaccgga-ttgctgttctaaca |
35052265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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