View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2727R-Insertion-6 (Length: 609)
Name: NF2727R-Insertion-6
Description: NF2727R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727R-Insertion-6 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 149 - 507
Target Start/End: Complemental strand, 732058 - 731702
Alignment:
| Q |
149 |
gtctccacaacacttgctcaaaaagaagcaagaaaccctactcgggcataaccaatcaaatgccgaatgaggcaacaaaaatttaaccatcaaacaaaaa |
248 |
Q |
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| T |
732058 |
gtctccacaacactcgctcaaaaagaagcaagaaaccctacgcgggcataaccaatcaaatgccgaatgaggcaacaaaaatttaaccatcaaacaaaaa |
731959 |
T |
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| Q |
249 |
ccacaacgcaagatttaactacttagagtaagcagcgatccaacattggatatattaatcttcttgcaaaaacttcaaaaatcagagaaattagtaaacc |
348 |
Q |
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| T |
731958 |
ccacaacgcaagatttaactacttagagtaagcagcgatccaacattggatatattaatcttcttgcaaaaatttcaaaaatcagagaaattagtaaacc |
731859 |
T |
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| Q |
349 |
actaatttcgttcatgatcttacaatctctcctactttctctccaatgtttccgtccgtctcattagtcaaataaatatacaaccaaggactaacaggac |
448 |
Q |
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| T |
731858 |
gctaatttcgtt-atgatcttacaatctctcctactttctctccaacgtttccgtccgtctcattagtcaaataaatatacaaccaaggactaacaggac |
731760 |
T |
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| Q |
449 |
cagtgtgacaaaacgttagaaactacttattatttccatttacatggaaacgaagtagg |
507 |
Q |
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| T |
731759 |
cggtgtgacaaaacgttagaaactactta-tatttccatttacatggaaacgaagtagg |
731702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 732237 - 732095
Alignment:
| Q |
9 |
agagtaacttcttaacccttggtttaaatcaattgagctactcaatcccatgtttaaaatgagtggtacaatctaagtaaaaatgaattacagtctctaa |
108 |
Q |
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| T |
732237 |
agagtaacttcttaacccttggtttaaatcaattgagctactca-tcccatgtttaaaatgagtagtacaatcgaagtaaaaatgaattacagtctctaa |
732139 |
T |
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| Q |
109 |
tgaaaacaatatgaaccaattggtagcatagctcttagaagtct |
152 |
Q |
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| T |
732138 |
tgaaaacaatatgaaccaattggtagcatagctcttagaagtct |
732095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 535 - 609
Target Start/End: Complemental strand, 731677 - 731603
Alignment:
| Q |
535 |
tgaaactggacagaattttgattttactaaaaggggtggaagnnnnnnnnttctgattcatttcattacgttttg |
609 |
Q |
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| T |
731677 |
tgaaactggacagaatcttgattttactaaaaggggtggaagtaaaaaaattctgattcatttcattacgttttg |
731603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 424 - 492
Target Start/End: Complemental strand, 728330 - 728263
Alignment:
| Q |
424 |
atatacaaccaaggactaacaggaccagtgtgacaaaacgttagaaactacttattatttccatttaca |
492 |
Q |
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| T |
728330 |
atatataaccaaggactacc-gaactagtgtgacaaagcgttagaaactacttattattttcgtttaca |
728263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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