View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2727R-Insertion-7 (Length: 410)

Name: NF2727R-Insertion-7
Description: NF2727R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2727R-Insertion-7
NF2727R-Insertion-7
[»] chr4 (1 HSPs)
chr4 (9-410)||(9909100-9909501)


Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 9 - 410
Target Start/End: Complemental strand, 9909501 - 9909100
Alignment:
Q  9 atttatcagtttttcaatgaatctacagagtaaaacttggtttataataataatcggagggagtagtatcttgtactgaaactatgtaataccatttttg 108  Q
    ||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  9909501 atttatcagttattcaatgaatctgcaaagtaaaacttggtttataataataatcggagggagtagtatcttgtactgaaagtatgcaataccatttttg 9909402  T
Q  109 ttagaaattttgactttaaggaaaacagtgccatcctcttcattgatagtccctgtgattgtcatgtgtgtgctgtttgttgcgttcttcaatggaggtt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9909401 ttagaaattttgactttaaggaaaacagtgccatcctcttcattgatagtccctgtgattgtcatgtgtgtgctgtttgttgcgttcttcaatggaggtt 9909302  T
Q  209 gttctttggcaattgttgcattgaaattgatttgttgagtatgtttgctaactaaagttggactaggcaatggtgagtcatgatgggccgtagctaaaaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9909301 gttctttggcaattgttgcattgaaattgatttgttgagtatgtttgctaactaaagttggactaggcaatggtgagtcatgatgggccgtagctaaaaa 9909202  T
Q  309 agggtccatcaagagctcttttgctgacaacctctctgagacatttgccaaacattttccaataaacttttgggtttcttcatcatggatcttgtcaaat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9909201 agggtccatcaagagctcttttgctgacaacctctctgagacatttgccaaacattttccaataaacttttgggtttcttcatcatggatcttgtcaaat 9909102  T
Q  409 gc 410  Q
    ||    
T  9909101 gc 9909100  T

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