View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2727_high_17 (Length: 381)
Name: NF2727_high_17
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727_high_17 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 22 - 381
Target Start/End: Original strand, 5652338 - 5652698
Alignment:
| Q |
22 |
cgccttcctctgagttatatccttatatattgcattgaagactataacgcgctactaaagtctcattggtgcatttgcccgcatctctttcctcctgatg |
121 |
Q |
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| T |
5652338 |
cgccttcctctgagttatatacttatatattgcattgaagactataacgcgctactaaagtctcattggtgcatttgcccgcatctctttcctcctgatg |
5652437 |
T |
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| Q |
122 |
cttaaatccatcgtttggagggtctaggatcactctgtttcatgtttgcccaatctctattgatttggcttgaattatcatcatcactagataacataga |
221 |
Q |
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| T |
5652438 |
cttaaatccatcgtttggagggtctaggatcactctgtttcatgtttgcccaatctctattgatttggcttgaattatcatcatcactagataacataga |
5652537 |
T |
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| Q |
222 |
t-nnnnnnntgtttatcattgttcttgcagccaatgttcattggagggaatgagagggaaaacattaataacttaaaacatcaaaaagtagacgatctaa |
320 |
Q |
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| T |
5652538 |
taaaaaaaatgtttatcattgttcttgcagccaatgttcattggagggaatgagagggaaaacattaataacttaaaacataaaaaagtagacgatctaa |
5652637 |
T |
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| Q |
321 |
aaactctatgttgacagacgtacataggtaactctgaattggcatttggagaaggatctca |
381 |
Q |
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| T |
5652638 |
aaactctatgttgacagccgtacataggtaactctgaattggcatttggagaaggttctca |
5652698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 381
Target Start/End: Complemental strand, 3022236 - 3022171
Alignment:
| Q |
319 |
aaaaactctatgttgacagacgtacataggta---actctgaattggcatttggagaaggatctca |
381 |
Q |
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| T |
3022236 |
aaaaactctatgttggcgggcgtacataggtagttactctgaattggcctttggagaaggctctca |
3022171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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